Lifecycle - OmicsDI

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Unknown (1591)
Genomics (249)
Transcriptomics (123)
Proteomics (56)
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Metabolomics (4)
Models (2)
Methylation profiling (1)

Organisms

Homo sapiens (36)
Mus musculus (11)
Plasmodium falciparum (11)
Schistosoma japonicum (8)
Arabidopsis thaliana (7)
Drosophila melanogaster (6)
Plasmodium berghei (5)
Zea mays (4)
Schistosoma mansoni (3)
Anopheles gambiae (3)
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Trypanosoma cruzi (2)
Nicotiana langsdorffii x Nicotiana sanderae (2)
Diabrotica virgifera virgifera (2)
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Cloeon dipterum (1)
Brugia malayi (1)
Plasmodium chabaudi (1)
Nicotiana tabacum (1)
Oncorhynchus mykiss (1)
Pseudomonas aeruginosa (1)

Organisms

Homo sapiens (25)
Plasmodium falciparum (9)
Mus musculus (8)
Drosophila melanogaster (6)
Arabidopsis thaliana (6)
Schistosoma japonicum (4)
Plasmodium berghei (4)
Notolabrus celidotus (3)
Zea mays (3)
Toxoplasma gondii (3)
Glycine soja (2)
Vibrio cholerae (2)
Serratia marcescens (2)
Cryptosporidium parvum (2)
soil metagenome (2)
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (1)
Puccinia striiformis f. sp. tritici CY32 (1)
Lysinibacillus varians (1)
Paramecium bursaria Chlorella virus 1 (1)
Taenia solium (1)
Gastrodia elata f. glauca (1)
Microbotryum violaceum (1)
Opisthorchis felineus (1)
Limnospira indica PCC 8005 (1)
Neurospora (1)
Galaxias brevipinnis (1)
Mycobacterium phage ZoeJ (1)
Leptospira interrogans serovar Copenhageni (1)
Ustilago bromivora (1)
Lepidium meyenii (1)

Repository

ENA (227)
geo (123)
pride (43)
biostudies-arrayexpress (36)
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Tissue

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Disease

Not Available (1)
Filariasis (1)
Influenza (1)
Leishmaniasis (1)
Lymphoma (1)
Onchocerciasis (1)
Toxoplasmosis (1)

Technology Type

Mass Spectrometry (43)
Shotgun proteomics (16)
Affinity purification coupled with mass spectrometry proteomics (8)
Bottom-up proteomics (6)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (5)
Gel-based experiment (4)
Mass spectrometry (3)
Data-independent acquisition (3)
SWATH MS (2)
Top-down proteomics (2)
All-ion fragmentation (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (4)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
Q Exactive Plus (1)
Instrument (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion (1)
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Direct infusion MS - alternating (1)
Direct infusion MS - positive (1)
Q Exactive (1)
5975C Series GC/MSD (Agilent) (1)

Publication Date

2025 (29)
2026 (21)
2015 (19)
2023 (19)
2024 (19)
2019 (17)
2022 (15)
2020 (12)
2014 (10)
2012 (10)
2016 (9)
2021 (9)
2017 (8)
2013 (5)
2007 (5)
2010 (4)
2018 (4)
2011 (3)
2009 (2)
2008 (2)

UNIPROT ID/AC

5691.AAQ15626 (2)
5691.AAQ15709 (2)
5691.AAQ16021 (2)
5691.AAZ10366 (2)
5691.AAZ10412 (2)
5691.AAZ10463 (2)
5691.AAZ10464 (2)
5691.AAZ10465 (2)
5691.AAZ10466 (2)
5691.AAZ10510 (2)
5691.AAZ10511 (2)
5691.AAZ10512 (2)
5691.AAZ10771 (2)
5691.AAZ10942 (2)
5691.AAZ10991 (2)
5691.AAZ11075 (2)
5691.AAZ11276 (2)
5691.AAZ11337 (2)
5691.AAZ11338 (2)
5691.AAZ11340 (2)
5691.AAZ11529 (2)
5691.AAZ11530 (2)
5691.AAZ11531 (2)
5691.AAZ11532 (2)
5691.AAZ11533 (2)
5691.AAZ11534 (2)
5691.AAZ11535 (2)
5691.AAZ11536 (2)
5691.AAZ11537 (2)
5691.AAZ11660 (2)

CHEBI ID

CHEBI:49033 (2)
CHEBI:17505 (2)
CHEBI:16634 (2)
CHEBI:16199 (2)
CHEBI:17368 (2)
CHEBI:183798 (1)
CHEBI:183799 (1)
CHEBI:183800 (1)
CHEBI:137552 (1)
CHEBI:136263 (1)
CHEBI:136268 (1)
CHEBI:136260 (1)
CHEBI:136259 (1)
CHEBI:136257 (1)
CHEBI:136256 (1)
CHEBI:136234 (1)
CHEBI:167267 (1)
CHEBI:167311 (1)
CHEBI:89351 (1)
CHEBI:167310 (1)
CHEBI:134243 (1)
CHEBI:134561 (1)
CHEBI:78090 (1)
CHEBI:66858 (1)
CHEBI:89266 (1)
CHEBI:86975 (1)
CHEBI:134241 (1)
CHEBI:134428 (1)
CHEBI:134239 (1)
CHEBI:134451 (1)

Metabolite Name

Methionine sulfoxide (2)
Hypoxanthine (2)
Urea (2)
Raffinose (2)
TAG 56:6 (1)
TAG 54:6 (1)
TAG 54:3 (1)
TAG 54:2 (1)
TAG 52:3 (1)
TAG 52:2 (1)
TAG 52:1 (1)
TAG 50:2 (1)
TAG 50:1 (1)
TAG 50:0 (1)
TAG 48:0 (1)
CE 20:5 (1)
CE 20:4 (1)
CE 18:3 (1)
CE 18:2 (1)
CE 18:1 (1)
CE 16:1 (1)
CE 16:0 (1)
Lariciresinol 4-O-glucoside (1)
Beta-tyrosine (1)
Dehydrophytosphingosine* (1)
Sesamin (1)
Linolenoyl ethanolamide (1)
Valine betaine (1)
Feruloylputrescine (1)
Nicotianamine (1)

First Public Date

2024 (34)
2025 (32)
2026 (26)
2019 (24)
2023 (20)
2014 (16)
2022 (14)
2021 (11)
2015 (11)
2016 (10)
2017 (9)
2018 (8)
2013 (7)
2020 (5)

Modelling Approach

Constraint-based model (2)

Lab affiliation

King's College London (4)
Engineering Biology for Agriculture, Rothamsted Research,Harpenden, AL5 2JQ, UK (2)
Leibniz Institute of Plant Biochemistry Research Group Head Proteome Biology of Plant Interactions (2)
-The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, Victoria 3052, Australia. -Department of Medical Biology, University of Melbourne, Parkville, Victoria 3010, Australia. (1)
3 Univ. Grenoble Alpes, CNRS, INRAE, CEA, IRIG-LPCV, 38000 Grenoble, FranceLPCV - to be completed 4. Univ. Grenoble Alpes, CEA, INSERM, UA13 BGE, CNRS, CEA, FR2048, Grenoble, France (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Germany Bioanalytics, Institute for Clinical Chemistry, University Medical Center Goettingen, Germany (1)
Biological Chemistry and Drug Discovery Wellcome Centre for Anti-Infectives Research (WCAIR) (1)
Buchmann Institute of Molecular Life Sciences and Institute of Biophysical Chemistry, Goethe University, Frankfurt am Main, Germany (1)
CNRS UMR 7178 IPHC-DSA-LSMBO (1)
Centre for Bioinnovation, University of the Sunshine Coast (1)
Centre for Virus Research, University of Glasgow (1)
Department of Biomedical Sciences, University of Padova, Italy (1)
Department of Infection Biology Institute of Infection & Global Health University of Liverpool Liverpool Science Park IC2 146 Brownlow Hill Liverpool L3 5RF UK (1)
Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool. Liverpool, UK. (1)
Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, UK (1)
Department of Infectious Disease, Faculty of Medicine, Imperial College London, London, United Kingdom. (1)
Department of Microbial Sciences School of Biosciences and Medicine University of Surrey (1)
Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Geneva, Switzerland. (1)
Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center; Vanderbilt-Ingram Cancer Center; Vanderbilt Center for Immunobiology, and Vanderbilt Institute for Infection, Immunology, and Inflammation, Nashville, TN, 37232-2363, USA., (1)
Faculty of Medicine Technion - Israel Institute of Technology Bat Galim, Haifa, Israel 31076 (1)
Henan agricultural universiy (1)
INRA, UMR1319,MICALIS (1)
Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College (1)
Key Laboratory of Plant Germplasm Enhancement and Speciality Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuchang Moshan (1)
Lancaster University (1)
MRC Toxicology Unit, University of Cambridge (1)
Mamuka Kvaratskhelia, University of Colorado School of Medicine, Division of Infectious Diseases, 12700 E. 19th Avenue, Research Complex 2, Aurora, CO 80045, USA (1)
Marseille Proteomics, Inserm UMR1068, CNRS UMR7258, Aix Marseille Université U105, Institut Paoli Calmettes (1)
Molecular Parasitology Laboratory, Cell and Molecular Biology Department, Ribeirão Preto Medical School, University of São Paulo, Brazil (1)
Proteomics facility, Central Science Laboratory, University of Tasmania (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Classification

protozoa (20)
helminths (8)
bacteria (8)
viruses (2)

Modification

N6 (1)

Study type

Transcription profiling by array (19)
RNA-seq of coding RNA (12)
Methylation profiling by high throughput sequencing (2)
Unknown experiment type (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (242)
2022 (172)
2024 (170)
2023 (163)
2021 (147)
2019 (119)
2020 (113)
2018 (83)
2017 (77)
2015 (66)
2016 (47)
2026 (42)
2014 (39)
2013 (34)
2012 (28)
2011 (26)
2010 (18)
2009 (14)
2006 (10)
2007 (9)
2008 (4)
2004 (2)
2005 (1)
2001 (1)

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Transcription profiling of Schistosoma lifecycle

Transcriptome analysis throughout the lifecycle of the helminth Schistosoma mansoni.

ORGANISM(S): Schistosoma mansoni

2009-12-31 | E-MEXP-2094 | biostudies-arrayexpress

Dynamic changes of histone H3 marks during Caenorhabditis elegans lifecycle revealed by middle-down proteomics

We applied a middle-down proteomics strategy for large scale protein analysis during in vivo development of Caenorhabditis elegans. We characterized post-translational modifications (PTMs) on histone H3 N-terminal tails at eight time points during the C. elegans lifecycle, including embryo, larval s...

ORGANISM(S): Caenorhabditis elegans

2015-11-02 | PXD002525 | Pride

A Transcriptome Analysis of the Lifecycle of Anthrobots

PRJNA1183755 | ENA

Lifecycle Experiment v2

PRJEB79852 | ENA

A Parameterized Lifecycle Assessment of Ex Situ CO₂ Mineralization, Using Olivine as a Case Study.

Not available

S-EPMC12854762 | biostudies-literature

Transcriptional control of the Cryptosporidium lifecycle

PRJNA971984 | ENA

Precursor-directed soil microbiome activation disrupts the lifecycle of the parasitic weed Striga hermonthica

PRJEB112563 | ENA

A Transcriptome Analysis of the Lifecycle of Anthrobots

The goal of this study was to quantify transcriptomic differences between sphereoids made from bronchial epithelial cells at different stages of their lifecycle. These differences in their transcriptome were then compared with the transcriptomes of their progenitor cells, normal human bronchial epit...

ORGANISM(S): Homo sapiens

2024-11-13 | GSE281379 | GEO

Bulk RNA sequencing data of the in vitro lifecycle of the kinetoplastid parasite Trypanosoma cruzi

PRJEB79576 | ENA

Lifecycle progression and sexual development of the apicomplexan parasite Cryptosporidium parvum

PRJNA530692 | ENA

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2041 Results

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