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CHEBI ID

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CHEBI:16997 (4)
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Valine (5)
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Study type

Transcription profiling by array (40)
RNA-seq of coding RNA (11)
Comparative genomic hybridization by array (3)
RNA-seq of non coding RNA (3)
Other (2)
MNase-seq (1)
ChIP-chip by tiling array (1)
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DNA-seq (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2015 (15)
2012 (9)
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2014 (7)
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Lab affiliation

Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes (URMITE) UMR 6236, Faculté de médecine 27 Bd Jean Moulin 13385 MARSEILLE Cedex 05 FRANCE (4)
Senior Lecturer Department of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, (1)
Emory University School of Medicine Departments of Biochemistry and Neurology (1)
Department of Chemistry, University of Washington, Seattle, WA, USA (1)
Cambridge Institute for Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, UK (1)

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Zebrafish Light Pulse

Transcriptional profiling of light response in the zebrafish at several organizational levels: the whole animal, the organ and the cell. Exposure of larvae, heart organ cultures and cell culture cells to light pulses of 1 and 3 hours duration and measurement of changes in gene expression compared to...

ORGANISM(S): Danio rerio

2011-03-01 | E-MTAB-381 | biostudies-arrayexpress

Transcriptomic measurements of Nannochloropsis oceanica CCMP1779 through a light:dark cycle

Nannochloropsis oceanica CCMP1779 is a marine unicellular stramenopile and an emerging reference species for basic research on oleogenic microalgae with biotechnological relevance. We investigated its physiology and transcriptome under light/dark cycles. We observed oscillations in lipid content and...

ORGANISM(S): Nannochloropsis oceanica

2015-08-01 | E-GEOD-69460 | biostudies-arrayexpress

Transcription profiling of mouse hippocampus after maternal treatment with saline or 20 mg/kg cocaine twice daily on gestational days 8-19

We explored the hypothesis that maternal cocaine exposure could alter the fetal epigenetic machinery sufficiently to cause lasting neurochemical and functional changes in the offspring. These data were used as preliminary results for paper:; Maternal cocaine administration in mice alters DNA methy...

ORGANISM(S): Mus musculus

2008-06-15 | E-GEOD-6651 | biostudies-arrayexpress

Expression data from mouse embryo during neural tube closure

This data series was used for two separate studies. The initial study was aimed to idenify expression changes brought about by the Cecr2Gt45Bic mutation during neural closure. The study included two different strains, BALB/cCrl in which Cecr2GT45Bic shows a neural tube defect phenotype and FVB/N in ...

ORGANISM(S): Mus musculus

2012-02-27 | E-GEOD-30957 | biostudies-arrayexpress

Absolute abundance of human crystallins in lens

Purpose: Measurement of crystallin abundances in human lens has previous relied on poorly reproducible electrophoretic separations or only semi-quantitative mass spectrometry. Therefore, isotope labeled standards were created for all major human lens crystallins so that their absolute abundances cou...

ORGANISM(S): Homo Sapiens Mus Musculus

PXD053890 | panorama

Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities.

Not available

S-EPMC4410273 | biostudies-literature

DNA methylation in schizophrenia in different patient-derived cell types

DNA methylation of gene promoter regions represses transcription and is a mechanism via which environmental risk factors could affect cells during development in individuals at risk for schizophrenia. We investigated DNA methylation in patient-derived cells that might shed light on early development...

ORGANISM(S): Homo sapiens

2017-11-01 | E-MTAB-5016 | biostudies-arrayexpress

Metabolomics analysis reveals the participation of efflux pumps and ornithine in the response of Pseudomonas putida DOT-T1E cells to challenge with propranolol

Efflux pumps are critically important membrane components that play a crucial role in strain tolerance in Pseudomonas putida to antibiotics and aromatic hydrocarbons that result in these toxicants being expelled from the bacteria. Here, the effect of propranolol on P. putida was examined by sudden a...

2016-08-23 | MTBLS320 | MetaboLights

Replenishing co-downregulated miR-100-5p and miR-125b-5p in malignant germ cell tumors causes growth inhibition through cell cycle disruption.

Illumina bead array data from TCam2, 1411H, and 2102Ep cell lines for mRNA expression. Cell lines were treated with either mismatch negative control (MNC) or combination miRNA replenishment with equimolar concentration of miR-100-5p and miR-125b-5p. Five comparisons are provided; namely TCam2 cell l...