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MetabolomicsInorganic Carbon Limitation in Cells of the Wild Type and Photorespiratory Mutants of the Cyanobacterium Synechocystis sp. Strain PCC 6803
The amount of inorganic carbon represents one of the main environmental factors determining productivity of photoautotrophic organisms. Using the model cyanobacterium Synechocystis sp. PCC 6803, we performed a first metabolome study with cyanobacterial cells shifted from high CO2 (5% in air) into co...
2015-09-14 | MTBLS5 | MetaboLights
GenomicsFeLight Co-limitation Thalassiosira weissflogii
Effects of low light and iron/light co-limitation on Thalassiosira weissflogii
PRJEB12400 | ENA
TranscriptomicsGene regulation of carbon fixation, storage and utilization in the diatom Phaeodactylum tricornutum acclimated to light/dark cycles
Regulation of carbon metabolism in the diatom Phaeodactylum tricornutum at cell, metabolite and gene expression level in exponential fed-batch cultures is reported. Transcriptional profiles and cell chemistry sampled simultaneously at all time-points provide a comprehensive data set on carbon incorp...
ORGANISM(S): Phaeodactylum tricornutum 
2013-03-01 | E-GEOD-42514 | biostudies-arrayexpress
TranscriptomicsGenome-wide characterization of light-regulated genes in Neurospora crassa
RNA-seq from Neurospora crassa at 5 time points of light induction, with 2 replicates for each, totalling 10 samples RNA-seq from Neurospora crassa at 5 time points of light induction, with 2 replicates for each, totalling 10 samples
ORGANISM(S): Neurospora crassa 
2014-08-01 | E-GEOD-53534 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis seedlings exposed to low temperatures in light and dark conditions
Eight-week old Arabidopsis plants were used to find out whether light has an effect on gene expression at low temperature.
ORGANISM(S): Arabidopsis thaliana 
2008-02-05 | E-MEXP-1068 | biostudies-arrayexpress
ProteomicsVibrio campbellii C/N-limitation
Analyses of Vibrio campbellii CAIM519 under C- and N-limited growth conditions, in both light and dark. Peak Lists are diDO-IPTL analyses; Raw files are unlabeled peptide with 2 synthetic proteorhodopsin standard peptides. See Gallagher & Waldbauer (mSystems) for details.
ORGANISM(S): Vibrio Campbellii Caim 519 = Nbrc 15631 (ncbitaxon:1224742) 
2021-03-25 | MSV000087100 | MassIVE
ProteomicsNovel proteins and an ancient light-harvesting complex family member are key to algal growth under ocean phosphate limitation
Micromonas implements a sustained non-photochemical quenching response to phosphate limitation, driven by light harvesting family protein LHCSR. This protein, allows stable growth under P-limitation and increased growth without major LCH adjustment as phosphate becomes more available. Proteomics res...
ORGANISM(S): Micromonas sp. (strain RCC299 / NOUM17) (Picoplanktonic green alga) 
2018-10-22 | PXD006320 | Pride
Phosphate limitation Lhc Algae 
ProteomicsProtein Redox Dynamics During Light-to-Dark Transitions in Cyanobacteria and Impacts Due to Nutrient Limitation
Protein Redox Dynamics During Light-to-Dark Transitions in Cyanobacteria and Impacts Due to Nutrient Limitation using chemical proteomics
ORGANISM(S): Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum) 
2014-08-29 | PXD000897 | Pride
Activity based protein profiling Proteomics 
TranscriptomicsExpression data from roots of Arabidopsis grown under sulfur, iron or potassium limitation
Deprivation of mineral nutrients causes significant retardation of plant growth. This slow growth is assumed to be associated with both nutrient specific transcriptional responses and additionally with common transcription patterns. In this study we adjusted the external supply of iron, potassium an...
ORGANISM(S): Arabidopsis thaliana 
2016-07-21 | E-GEOD-77602 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis exposed to low red:far red light treatment at 16 and 22 degrees
The purpose of this experiment was to identify genes responding differently to a 24 h low red to far red ratio (R:FR) treatment in plants grown at 16 and 22 degrees Experiment Overall Design: Microarrays were used as a gene discovery tool to identify genes showing differential regulation by low R:FR...
ORGANISM(S): Arabidopsis thaliana 
2008-06-16 | E-GEOD-8745 | biostudies-arrayexpress
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