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TranscriptomicsA systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis
Inflorescence stems of 20 Arabidopsis thaliana mutants, each mutated in a single gene of the lignin biosynthetic pathway (PAL1 , PAL2, C4H, 4CL1, 4CL2, CCoAOMT1, CCR1, F5H1, COMT and CAD6, two mutant alleles each) were analyzed by microarrays.
ORGANISM(S): Arabidopsis thaliana 
2012-09-20 | E-MTAB-1284 | biostudies-arrayexpress
GenomicsTaxonomic Diversity and Lignin Biodegradation in Bacterial Community of Caatinga Soil
Taxonomic Diversity and Lignin Biodegradation in Bacterial Community of Caatinga Soil
PRJEB32008 | ENA
ProteomicsOuter membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440
Lignin modifications and the exoproteome of three aromatic catabolic bacteria: Pseudomonas putida KT2440, Rhodoccocus jostii RHA1, and Amycolatopsis sp. ATCC 39116. Samples were digested with trypsin, then analyzed by LC-MS/MS. Data was searched with MSGF+ and abundances inferred using PNNL's DMS an...
ORGANISM(S): Pseudomonas Putida Kt2440 (ncbitaxon:160488) Amycolatopsis Sp. Atcc 39116 (ncbitaxon:385957) Rhodococcus Jostii Rha1 (ncbitaxon:101510) 
2019-11-01 | MSV000084524 | MassIVE
UnknownCharacterization of Ligninolytic Bacteria and Analysis of Alkali-Lignin Biodegradation Products.
Not available
S-EPMC7810122 | biostudies-literature
UnknownVariations in lignin monomer contents and stable hydrogen isotope ratios in methoxy groups during the biodegradation of garden biomass.
Not available
S-EPMC9130509 | biostudies-literature
UnknownBiodegradation of lignin monomers and bioconversion of ferulic acid to vanillic acid by Paraburkholderia aromaticivorans AR20-38 isolated from Alpine forest soil.
Not available
S-EPMC8007519 | biostudies-literature
UnknownCharacterization of Two Marine Lignin-Degrading Consortia and the Potential Microbial Lignin Degradation Network in Nearshore Regions.
Not available
S-EPMC10269927 | biostudies-literature
TranscriptomicsRegulation of gene expression during the onset of ligninolytic oxidation by Phanerochaete chrysosporium on colonized wood
The biodegradation of lignocellulose requires the disruption of its lignin, which shields the metabolically assimilable polysaccharides in this recalcitrant natural composite. Although a variety of microorganisms can attack lignocellulose, white rot basidiomycetes are uniquely efficient at this proc...
ORGANISM(S): Phanerochaete chrysosporium 
2015-09-16 | E-GEOD-69461 | biostudies-arrayexpress
Genomics
lignin degradation microbial seuqence
PRJNA666498 | ENA
UnknownEfficient Azo Dye Biodecolorization System Using Lignin-Co-Cultured White-Rot Fungus.
Not available
S-EPMC9866751 | biostudies-literature
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