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ProteomicsSIM-XL: a powerful and user-friendly tool for peptide cross-linking analysis
Chemical cross-linking has emerged as a powerful approach for the structural characterization of proteins and protein complexes. However, the correct identification of covalently linked (cross-linked) peptides analyzed by tandem mass spectrometry is still an open challenge. Here we present SIM-XL, a...
ORGANISM(S): Homo sapiens (Human) 
2015-02-02 | PXD001677 | Pride
Cross-linked peptides Search engine Cross-linking 
ProteomicsAn Evaluation of the Crystal Structure of C-terminal Truncated Apolipoprotein A-I in Solution Reveals Structural Dynamics Related to Lipid Binding
Apolipoprotein (apo)A-I mediates many of the anti-atherogenic functions attributed to high density lipoprotein (HDL). Unfortunately, efforts toward a high-resolution structure of full-length apoA-I have not been fruitful, though there have been successes with deletion mutants. Recently, a C-terminal...
ORGANISM(S): Homo sapiens (Human) 
2017-05-30 | PXD006574 | Pride
Apolipoprotein Mass spectrometry (ms) Structural biology Oligomerization Small-angle x-ray scattering (saxs) Structural model 
ProteomicsProteome-scale recombinant standard datasets for XL-MS
This submission includes the complete set of raw data generated from the analytical standard, the concept of which is described in our manuscript "Proteome-Scale Recombinant Standards And A Robust High-Speed Search Engine To Advance Cross-Linking MS-Based Interactomics". In this study, we develop a ...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2024-08-06 | PXD042173 | Pride
Crosslinking mass spectrometry Search engine Bioinformatics 
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