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Unknown (37555)
Genomics (17903)
Transcriptomics (9965)
Other (1365)
Proteomics (496)
Methylation profiling (321)
Metabolomics (44)
Models (24)
Genomic (20)
Multiomics (9)
Clinical (4)

Organisms

Mus musculus (7717)
Homo sapiens (5008)
Rattus norvegicus (178)
Danio rerio (172)
Drosophila melanogaster (139)
Arabidopsis thaliana (78)
Gallus gallus (64)
Macaca mulatta (43)
Bos taurus (38)
Pan troglodytes (31)
Caenorhabditis elegans (30)
Schmidtea mediterranea (26)
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Xenopus laevis (19)
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Candida albicans (15)
Canis lupus familiaris (14)
Saccharomyces cerevisiae (14)
Daphnia pulex (13)
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Listeria monocytogenes (10)
Chlamydomonas reinhardtii (9)
Ciona intestinalis (8)
Plasmodium falciparum (6)
Chlorocebus sabaeus (4)
Phallusia mammillata (4)
Equus caballus (3)
Ostreococcus tauri (1)
Mus sp. (1)
Murinae (1)

Organisms

Mus musculus (5964)
Homo sapiens (3609)
Olpidium sp. (276)
Danio rerio (136)
Rattus norvegicus (120)
Drosophila melanogaster (103)
Staphylococcus aureus (54)
Rhizopus arrhizus (50)
Arabidopsis thaliana (43)
Mycobacterium tuberculosis (40)
Escherichia coli (35)
Gallus gallus (32)
Bos taurus (31)
Sus scrofa (29)
Neisseria meningitidis (24)
Caenorhabditis elegans (22)
Schmidtea mediterranea (20)
Macaca mulatta (18)
Saccharomyces cerevisiae (14)
Xenopus laevis (13)
Ciona robusta (13)
unidentified (13)
Severe acute respiratory syndrome coronavirus 2 (11)
Mus (9)
Candida albicans (9)
mouse gut metagenome (9)
Artemia parthenogenetic lineage (8)
Klebsiella pneumoniae (8)
Xenopus tropicalis (7)
Macaca fascicularis (7)

Repository

ENA (15008)
geo (10281)
biostudies-arrayexpress (3209)
MassIVE (511)
GPMDB (375)
pride (374)
EGA (201)
MetaboLights (32)
LINCS (30)
iProX (21)
BioModels (20)
dbGaP (20)
jPOST (15)
ExpressionAtlas (14)
GNPS (11)
EVA (10)
PanoramaPublic (5)
Cell Collective (4)
PeptideAtlas (3)
NODE (2)
MetabolomicsWorkbench (1)

Tissue

Cell culture (107)
Embryonic stem cell (35)
Stem cell (22)
Bone marrow (18)
Epithelial cell (15)
Blood (13)
Brain (10)
Embryo (10)
T cell (10)
Cell suspension culture (9)
B cell (8)
Fibroblast (8)
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Lymphocyte of B lineage (7)
Primary cell (7)
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Blood cell (5)
Early embryonic cell (5)
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Bone (4)
Root (4)
Blood platelet (3)
Colon (3)
Meyloid lineage cells (2)
Lamina propria (1)
Bone marrow (1)
Others (1)

Disease

Normal (8)
Glioblastoma multiforme (3)
Ductal breast cancer (2)
Megakaryoblastic leukemia (2)
B cell chronic lymphocytic leukemia (1)
Astrocytoma (1)
Cytomegalovirus seropositive (1)
Vitamin B12 deficiency (1)
Lymphoblastic leukemia (1)
Yersinia enterocolitica WAP infected (virulent) (1)
HIV-1 and Neisseria gonorrhoeae infected (1)
Benign nevi (1)
HIV-associated dementia (1)
LPS-induced acute lung injury (1)
Alopecia (1)
Non-Hodgkin lymphoma (1)
Severe malaria (1)
Infant Acute Lymphoblastic Leukaemia (1)
Not applicable (1)
Asthma (1)
Myeloid neoplasm (1)
Fish tuberculosis (1)
Oligodendroglioma (1)
Non-metastatic melanoma (1)
Erythroleukemia (1)
Mild asthma (1)
T-cell acute lymphoblastic leukemia (1)
Megakaryoblastic leukaemia (1)
Osteosarcoma (1)
None (1)

Technology Type

Mass spectrometry (14)
Fluorescence intensity (10)
MEMA (8)
GCP (6)
Illumina HiSeq 2000 (5)
P100 (4)
Whole Genome Sequencing (3)
DNA sequencing (3)
KINOMEscan (3)
QPCR (3)
RNA-seq (3)
Illumina HiSeq 4000, ILLUMINA (2)
ILLUMINA, Illumina HiSeq 2000 (2)
Shotgun-MS (2)
Humanomniexpress-24-v1-1-a, Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, Illumina HiSeq 4000, ILLUMINA (1)
NextSeq 500, ILLUMINA, Illumina HiSeq 2500 (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (ILLUMINA), Illumina HiSeq 4000 (ILLUMINA) (1)
Illumina HumanOmniExpress-FFPE-12 v1.0 BeadChip (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HumanMethylation 450K (1)
Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2500, Illumina MiSeq, NextSeq 500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina MiSeq, HiSeq X Ten (1)
AB 5500xl Genetic Analyzer (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
Illumina Genome Analyzer II (1)
Cellarium (1)
Fluorescence imaging (1)
KiNativ (1)

Instrument Platform

Illumina NovaSeq 6000 (119)
NextSeq 500 (69)
Illumina HiSeq 2500 (69)
Illumina HiSeq 2000 (53)
Illumina HiSeq 4000 (44)
NextSeq 550 (13)
Illumina NovaSeq X (11)
Illumina MiSeq (9)
Illumina HiSeq 3000 (9)
NextSeq 2000 (7)
Illumina HiSeq 1500 (7)
Agilent G2565AA and G2565BA Microarray Scanner (5)
Illumina Genome Analyzer II (5)
Illumina Genome Analyzer IIx (4)
Flow Cytometer (4)
MouseWG-6_V2_0_R1_11278593_A (3)
Spectronic Helios Alpha UV-Vis spectrophotometer (3)
GenePix 4000B [Axon Instruments] (3)
NA (3)
Thermomixer (2)
Bio-Rad CFX96 Real-time System (2)
Sony SH800 (2)
Linux computer (2)
Ultracentrifuge (2)
Scanning hardware (2)
Ion Torrent Proton (2)
DNBSEQ-G400 (2)
BGISEQ-500 (2)
HiSeq X Ten (2)
Hamamatsu Nanozoomer S60 (1)

Publication Date

2026 (1410)
2025 (1260)
2024 (1226)
2023 (1155)
2022 (1103)
2021 (941)
2020 (829)
2019 (787)
2015 (762)
2013 (688)
2014 (684)
2016 (624)
2018 (590)
2012 (504)
2017 (499)
2011 (460)
2010 (362)
2008 (254)
2009 (193)
2007 (109)
2005 (34)
2004 (22)
2006 (16)
2003 (2)

UNIPROT ID/AC

Q15406 (2)
Q99626 (2)
Q92908 (2)
Q6ZRP7 (2)
Q8N7R0 (2)
Q01860 (2)
P04637 (2)
A0ELI5 (2)
A0EQY3 (2)
A0JNY3 (2)
A0JNY7 (2)
A0MNP4 (2)
A0PJK7 (2)
A0PK78 (2)
A1A596 (2)
A1E5T5 (2)
A1L013 (2)
A1L0U3 (2)
Q9QX98 (1)
P70661 (1)
P92973 (1)
Q99JB6 (1)
P51450 (1)
P04202 (1)
P42227 (1)
P08505 (1)
P97378 (1)
P01580 (1)
Q9JKD8 (1)
Q9LKL2 (1)

ENSEMBL ID

ENSG00000148200 (2)
ENSG00000165556 (2)
ENSG00000141448 (2)
ENSG00000165661 (2)
ENSG00000176654 (2)
ENSG00000204531 (2)
ENSBTAG00000027439.2 (1)
ENSBTAG00000019002.3 (1)
ENSBTAG00000039197.1 (1)
ENSBTAG00000016592.4 (1)
ENSBTAG00000038586.1 (1)
ENSBTAG00000035544.2 (1)
ENSBTAG00000016679.4 (1)
ENSBTAG00000011545.3 (1)
ENSBTAG00000001124.4 (1)
ENSBTAG00000011197.4 (1)
ENSBTAG00000016432.4 (1)
ENSBTAG00000014841.4 (1)
ENSBTAG00000015596.4 (1)
ENSBTAG00000014775.4 (1)
ENSBTAG00000020902.4 (1)
ENSBTAG00000030358.2 (1)
ENSBTAG00000006463.4 (1)
ENSBTAG00000006029.3 (1)
ENSBTAG00000014179.4 (1)
ENSBTAG00000021417.4 (1)
ENSBTAG00000001299.4 (1)
ENSBTAG00000004059.3 (1)
ENSBTAG00000015188.3 (1)
ENSBTAG00000008567.4 (1)

CHEBI ID

CHEBI:33699 (2)
CHEBI:25078 (1)
CHEBI:13350 (1)
CHEBI:29298 (1)
CHEBI:5785 (1)
CHEBI:25363 (1)
CHEBI:29294 (1)
CHEBI:29299 (1)
CHEBI:24185 (1)
CHEBI:10570 (1)
CHEBI:24194 (1)
CHEBI:12404 (1)
CHEBI:17971 (1)
CHEBI:10566 (1)
CHEBI:39975 (1)
CHEBI:12400 (1)
CHEBI:21312 (1)
CHEBI:13108 (1)
CHEBI:6230 (1)
CHEBI:13113 (1)
CHEBI:46309 (1)
CHEBI:13489 (1)
CHEBI:13506 (1)
CHEBI:9846 (1)
CHEBI:22104 (1)
CHEBI:12927 (1)
CHEBI:59863 (1)
CHEBI:47950 (1)
CHEBI:24112 (1)
CHEBI:20936 (1)

Metabolite Name

L-Phenylalanine (8)
Citric acid (7)
Adenosine (7)
L-Isoleucine (7)
Succinic acid (6)
Choline (6)
Fumaric acid (6)
Taurine (6)
2-Hydroxycinnamic acid (6)
L-Tryptophan (6)
L-Tyrosine (6)
Inosine (6)
Ethylmalonic acid (5)
Glycine (5)
Niacinamide (5)
L-Histidine (5)
L-Glutamic acid (5)
Methionine (5)
4-Hydroxybenzaldehyde (5)
Oleamide (5)
Tyramine (5)
Pipecolic acid (5)
Urocanic acid (5)
Spermidine (5)
Glutaric acid (5)
Sucrose (5)
Creatine (5)
L-Valine (5)
Hypoxanthine (5)
N-Methylhydantoin (4)

First Public Date

2026 (1857)
2024 (1640)
2025 (1596)
2023 (1455)
2022 (1220)
2019 (1181)
2014 (1164)
2020 (1150)
2021 (1038)
2017 (656)
2018 (629)
2013 (501)
2015 (492)
2016 (378)
2012 (32)
2011 (10)
2010 (9)

Modelling Approach

Ordinary differential equation model (9)
Boolean model (1)
Agent-based model (1)
Differential equation model (1)
Constraint-based model (1)

Study status

Terminated (1)
Not yet recruiting (1)
Not provided (1)
Completed (1)

Lab affiliation

1. Center for Molecular Medicine Cologne, University of Cologne, Robert-Koch-Str. 21, D- 50931 Cologne, Germany 2. Inst. for Neurophysiology, University of Cologne, Robert-Koch-Str. 39, D-50931 Cologne, Germany 3. CECAD; Cologne Cluster of Excellence in Cellular Stress Responses in Ageing-associated Diseases, University of Cologne, Joseph-Stelzmann-Str. 26, D-50931 Cologne, Germany (3)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, B-9000 Ghent, Belgium (3)
Technical University of Munich, School of Medicine, Institute of Virology, 81675 Munich, Germany (3)
1. Faculty of Biology, Technion - Israel Institute of Technology, Haifa 320003, Israel 2. Computer Science Department, Technion - Israel Institute of Technology, Haifa 320003, Israel (2)
Australian Institute for Bioengineering and Nanotechnology, The University of Queensland (2)
CNIO (2)
CRUK - Scotland Institute - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Department of Biochemistry UT Southwestern Medical Center (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands Division of Molecular Genetics, The Netherlands Cancer Institute, 1066CX, Amsterdam, The Netherlands (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (2)
Department of Molecular Biology, Radboud Institute for Molecular Life Sciences, Radboud University, Nijmegen, The Netherlands (2)
Department of Pharmacology University of North Carolina - Chapel Hill Chapel Hill, NC 27599 (2)
Head, Chair Plant Biotechnology Faculty of Biology University of Freiburg Schaenzlestrasse 1 D-79104 Freiburg Germany (2)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (2)
Molecular Biology, Radboud Institute for Molecular Life Sciences (RIMLS), Nijmegen, the Netherlands (2)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark (2)
University of Edinburgh (2)
Weill Cornell Medical College (2)
1 Department of Medicine - Western Health, The University of Melbourne, Melbourne, Australia The Australian Institute for Musculoskeletal Science (AIMSS), Western Health, Victoria University and The University of Melbourne, Melbourne, Australia 3 Institute for Health and Sport, Victoria University, Melbourne, Australia (1)
1 Hudson Institute of Medical Research, Clayton, VIC, Australia, 2 Department of Molecular and Translational Sciences, Monash University, Clayton, VIC, Australia (1)
1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada 2 Department of Molecular Genetics, University of Toronto, Toronto, ON M5S1A5, Canada (1)
1. Centre for Gene Therapy and Regenerative Medicine, King’s College London, London, UK 2. Department of Internal Medicine III, University Hospital Carl Gustav Carus at the Technische Universität Dresden, Dresden, Germany (1)
1. Faculty of Biology, Technion - Israel Institute of Technology, Haifa 320003, Israel. 2. Computer Science Department, Technion - Israel Institute of Technology, Haifa 320003, Israel. (1)
1. Gene Regulation, Stem Cells and Development group, PTS, Granada GENyO, Pfizer-University of Granada-Andalusian Regional Government Centre for Genomics and Oncological Research, Avenida de la Ilustración 114, 18016 Granada, Spain. 2. Department of Biochemistry and Molecular Biology I, Faculty of Science, University of Granada, Avenida Fuentenueva s/n, 18071 Granada, Spain. 3. Instituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain. (1)
1Department of Urology, Emory University School of Medicine, Atlanta, GA, USA (1)
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 2Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 3Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (1)
1UNSW Water Research Centre, School of Civil and Environmental Engineering, University of New South Wales, Sydney, NSW 2052, Australia (1)

Keyword

Dexrazoxane (1)
Razoxane (1)
Obatoclax (1)
Vincristine (1)
Doxorubicin (1)
Liposomal doxorubicin (1)
Intestinal microbiota transplantation (1)

IsPrivate

False (20)

Model Flag

Non Kinetic (7)

Submitter Keywords

Manuscript Accepted (1)
FROG (1)

Classification

bacteria (326)
fungi (124)
viruses (23)
protozoa (18)
helminths (2)

Modification

15.994915 (2)
N6 (2)
-17.026549 (1)
0.984 (1)
15.99491 (1)
42.010565 (1)
57.02146 (1)
6-dioxaoctanediamine derivatized cysteine (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

Transcription profiling by array (1709)
RNA-seq of coding RNA (534)
ChIP-seq (345)
RNA-seq of coding RNA from single cells (125)
Methylation profiling by array (67)
Comparative genomic hybridization by array (55)
Methylation profiling by high throughput sequencing (47)
Unknown experiment type (35)
RNA-seq of non coding RNA (34)
ChIP-chip by tiling array (33)
Other (33)
Genotyping by array (16)
DNA-seq (14)
MicroRNA profiling by array (13)
ChIP-chip by array (12)
Animal - High-throughput sequencing (11)
ATAC-seq (11)
RNA-seq of total RNA (10)
Transcription profiling by tiling array (8)
Transcription profiling by RT-PCR (8)
Baseline (7)
Cell line - High-throughput sequencing (6)
Human - High-throughput sequencing (5)
MicroRNA profiling by high throughput sequencing (5)
Transcription profiling by SAGE (4)
Differential (4)
Animal - One-color microarray (4)
Cell line - One-color microarray (4)
Genotyping by high throughput sequencing (4)
Cell line - Single-cell sequencing (3)

Release Date

2022 (3576)
2021 (3349)
2023 (3230)
2025 (3135)
2024 (2746)
2020 (2658)
2019 (2408)
2018 (2390)
2016 (2233)
2015 (2164)
2017 (2141)
2014 (1994)
2013 (1702)
2012 (1356)
2011 (1153)
2010 (1014)
2009 (748)
2008 (679)
2026 (511)
2007 (443)
2006 (292)
2005 (230)
2004 (154)
2003 (112)
2002 (97)
2001 (77)
2000 (51)
1998 (42)
1999 (40)
1997 (18)

Location

Canada (2)
United States (2)
China (1)
United Kingdom (1)

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Released palmitic acid–mediated TLR4/NF-κB activation enhances the virulence of Bordetella pertussis MT28 lineage

Whooping cough resurged globally despite the widespread vaccination. A macrolide-resistant (MR) lineage carrying the high-virulence ptxP3 allele, ptxP3 MR-MT28 (MT28), has imposed a substantial burden on pertussis epidemics, while the underlying factors driving its prevalence remain unclear. Thus...

2025-12-21 | MTBLS13545 | MetaboLights

Untargeted metabolomic profiling reveals lineage-associated chemical divergence in Ophiorrhiza sensu lato

This study performed untargeted LC–MS metabolomic profiling of fresh leaf tissues from seven representative Ophiorrhiza sensu lato taxa: O. subpunicea, O. cantonensis, O. pumila, O. shiqianensis, O. humilis, O. huanjiangensis, and O. hispidula. Metabolites were extracted using a methanol–acetonitril...

2026-07-21 | MTBLS15110 | MetaboLights

Palmitic acid-mediated TLR4/NF-κB activation drives the pathogenicity of hypervirulent Bordetella pertussis MT28 lineage

2025-06-21 | MTBLS12625 | MetaboLights

Comparative characterization of the infant gut microbiome and their maternal lineage by a multi-omics approach

The human gut microbiome establishes and matures during infancy, and dysregulation at this stage may lead to pathologies later in life. We conducted a multi-omics study comprising three generations of family members to investigate the early development of the gut microbiota. Fecal samples from 20...

2024-03-07 | MTBLS7670 | MetaboLights

A gut-associated Prevotellaceae_NK3B31_group lineage modulates host metabolic pathways and enhances feed efficiency in ducks

Amidst the mismatch between domestic feed supply and demand in China, along with the competition for food between humans and animals, optimizing feed efficiency has become crucial for industry growth. Nevertheless, the biological processes driving variations in feed efficiency remain unexplored. ...

2026-03-10 | MTBLS14013 | MetaboLights

A gut-associated Prevotellaceae_NK3B31_group lineage modulates host metabolic pathways and enhances feed efficiency in ducks

2026-03-10 | MTBLS14017 | MetaboLights

A gut-associated Prevotellaceae_NK3B31_group lineage modulates host metabolic pathways and enhances feed efficiency in ducks

2026-03-10 | MTBLS14009 | MetaboLights

Chickarmane2008 - Stem cell lineage determination

Chickarmane2008 - Stem cell lineage determination In this work, a dynamical model of lineage determination based upon a minimal circuit, as discussed in PMID: 17215298 , which contains the Oct4/Sox2/Nanog core as well its interaction with a few other key genes ...

2024-09-02 | BIOMD0000000209 | BioModels

Chickarmane2008 - Stem cell lineage - NANOG GATA-6 switch

Chickarmane2008 - Stem cell lineage - NANOG GATA-6 switch In this work, a dynamical model of lineage determination based upon a minimal circuit, as discussed in PMID: 17215298 , which contains the Oct4/Sox2/Nanog core as well its interaction with a few other ke...

2024-09-02 | BIOMD0000000210 | BioModels

EZH2 promotes a bi-lineage identity in basal-like breast cancer cells

The mechanisms regulating breast cancer differentiation state are poorly understood. Of particular interest are molecular regulators controlling the highly aggressive and poorly differentiated traits of basal-like breast carcinomas. Here we show that the Polycomb factor EZH2 maintains the differenti...

ORGANISM(S): Homo sapiens

2012-09-21 | E-GEOD-36939 | biostudies-arrayexpress