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Proteomics (27)
Transcriptomics (17)
Unknown (15)
Metabolomics (6)
Genomics (2)

Organisms

Homo sapiens (18)
Mus musculus (7)
Drosophila melanogaster (5)
Rattus norvegicus (3)
Haemophilus influenzae (2)
Desmodus rotundus (2)
Haemophilus influenzae PittII (1)
Strongylocentrotus purpuratus (1)
Pseudomonas synxantha (1)
Canis lupus familiaris (1)
Elaeis guineensis (1)
Bos taurus (1)
Candida albicans (1)
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 (1)
Saccharomyces cerevisiae (1)

Repository

pride (25)
biostudies-arrayexpress (17)
MetaboLights (6)
EGA (2)
jPOST (1)
MassIVE (1)

Tissue

Cell culture (3)
Permanent cell line cell (3)
Blood serum (2)
Brain (2)
HeLa cell (2)
Leukemia cell (2)
Adrenal medulla chromaffin cell (1)
Barrett's esophagus (1)
Blood (1)
CNS neuron (sensu Vertebrata) (1)
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Hepatocyte (1)
Jump-In-T-REx HEK293 cell (1)
Liver (1)
Lung (1)
Melanocyte (1)
Neural stem cell (1)
Photosynthetic cell (1)
Primary cell (1)
T cell (1)

Disease

Cervix carcinoma (2)
Leukemia (2)
Barrett's esophagus (1)
Disease free (1)
Hepatocellular carcinoma (1)
Lung cancer (1)

Technology Type

Mass Spectrometry (25)
Shotgun proteomics (14)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (4)
SWATH MS (4)
Mass spectrometry assay (2)
Bottom-up proteomics (2)
Gel-based experiment (2)
Mass spectrometry imaging (1)
Metaproteomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - alternating - reverse phase (2)
Illumina HiSeq 4000 (1)
LTQ Orbitrap Velos (1)
5975C Series GC/MSD (Agilent) (1)
Diode array detection MS - alternating - reverse phase (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
MS Imaging - (1)

Publication Date

2024 (7)
2021 (6)
2026 (5)
2015 (4)
2012 (4)
2011 (4)
2014 (3)
2020 (3)
2019 (3)
2018 (3)
2010 (2)
2025 (2)
2013 (1)
2009 (1)
2022 (1)
2016 (1)

CHEBI ID

CHEBI134216 (1)
CHEBI15354 (1)
CHEBI15544 (1)
CHEBI15558 (1)
CHEBI15603 (1)
CHEBI15614 (1)
CHEBI15676 (1)
CHEBI15698 (1)
CHEBI15724 (1)
CHEBI15728 (1)
CHEBI15741 (1)
CHEBI16020 (1)
CHEBI16220 (1)
CHEBI16259 (1)
CHEBI16318 (1)
CHEBI16344 (1)
CHEBI16347 (1)
CHEBI16349 (1)
CHEBI16359 (1)
CHEBI16411 (1)
CHEBI16414 (1)
CHEBI16437 (1)
CHEBI16450 (1)
CHEBI16467 (1)
CHEBI16534 (1)
CHEBI16543 (1)
CHEBI16610 (1)
CHEBI16643 (1)
CHEBI16704 (1)
CHEBI16737 (1)

Metabolite Name

Choline (2)
Creatine (2)
(14:0) 1-myristoyl-sn-glycero-3-phosphocholine (1)
(16:0) 1-palmitoyl-sn-glycero-3-phosphocholine (1)
1-Aminocyclopropanecarboxylic acid (1)
1-Methyladenosine (1)
15(S)-HETE (1)
2,6-Dihydroxybenzoic acid (1)
2-Hydroxy-3-methylbutyric acid (1)
2-Hydroxycaproic acid (1)
2-Methylhippuric acid (1)
2-Oxoglutaric acid (1)
3,4-dihydroxybenzaldehyde (1)
3-Hydroxybutyric acid (1)
3-Hydroxyphenylacetic acid (1)
3-Hydroxyproline (1)
3-Indoxylsulfuric acid (1)
3-Methyl-2-oxovaleric acid (1)
3-O-feruloylquinic acid (1)
3-Ureidopropionic acid (1)
4,6-Dioxoheptanoic acid (1)
4-Guanidinobutyric acid (1)
4-Hydroxybenzaldehyde (1)
4-Hydroxyhippuric acid (1)
4-Nitrocatechol (1)
4-pyridoxic acid (1)
5-Aminolevulinic acid (1)
5-Hydroxyferulic acid (1)
5-Methylcytidine (1)
5-O-Caffeoylshikimic acid (1)

Modification

N6 (1)

Study type

Transcription profiling by array (10)
RNA-seq of non coding RNA (5)
RNA-seq of coding RNA (2)

Release Date

2012 (7)
2011 (4)
2021 (3)
2022 (3)
2015 (2)
2014 (2)
2013 (2)
2010 (2)
2024 (2)
2019 (2)
2018 (2)
2009 (1)

Lab affiliation

Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania (3)
Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland (2)
Biomolecular Mass Spectrometry (1)
Consultant Medical oncology (1)
Debora Bonenfant, Novartis Institutes for Biomedical research, Basel, Switzerland (1)
Depts. of Pharmacology and Neurology, Boston University School of Medicine (1)
Director of the Robert H. Lurie Comprehensive Cancer Center of Northwestern University and the Jesse, Sara, Andrew, Abigail, Benjamin and Elizabeth Lurie Professor of Oncology in the Departments of Medicine and Biochemistry and Molecular Genetics. (1)
Head of the Mass Spectrometry facility of the Institut Curie (LSMP) (1)
Imperial College London, The Francis Crick Institute (1)
Institute of Molecular Systems Biology, ETH Zurich (1)
JGU University Mainz (1)
Maastricht MultiModal Molecular Imaging institute (M4i), Maastricht University, The Netherlands (1)
Microbiology Department, Faculty of Sciences, Pontificia Universidad Javeriana, Bogotá 110231, Colombia Microbiology and Parasitology Department, Faculty of Pharmacy, Universidad Complutense de Madrid, Madrid 28040, Spain (1)
Molecular Neuroendocrinology Group, Translational Health Sciences, Bristol Medical School, University of Bristol (1)
National Institute of Standards and Technology (1)
National Institute of Standards and Technology, Charleston, South Carolina, USA (1)
Penn Epigenetics Institute Department of Biochemistry and Biophysics Smilow Center for Translational Research University of Pennsylvania School of Medicine (1)
Professor and Academic Senior Group Leader Queensland Brain Institute University of Queensland (1)
The University of Sydney (1)
Thoracic and GI Malignancies Branch, CCR, NCI, NIH, Bethesda, MD (1)
UNIVERSITY OF HYDERABAD INDIA 50046 (1)
irector of the Robert H. Lurie Comprehensive Cancer Center of Northwestern University and the Jesse, Sara, Andrew, Abigail, Benjamin and Elizabeth Lurie Professor of Oncology in the Departments of Medicine and Biochemistry and Molecular Genetics. (1)

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Web-Based Stress Management for Newly Diagnosed Patients With Cancer (STREAM): A Randomized, Wait-List Controlled Intervention Study.

Not available

S-EPMC5844668 | biostudies-literature

Proteomics analysis on lipid metabolism in Elaeis guineensis and Elaeis oleifera

Total proteins were extracted from randomly selected mesocarp fruitlets and subjected to label-free liquid chromatography mass spectrometry. Mass spectra were acquired using Thermo Xcalibur and deconvoluted with Proteome Discoverer 2.2 to create the mass list. Sequsest search engine was used to mat...

ORGANISM(S): Elaeis Guineensis

2020-06-01 | PXD017436 | JPOST Repository

Computational Ranking of Yerba Mate Small Molecules Based on Their Predicted Contribution to Antibacterial Activity against Methicillin-Resistant Staphylococcus aureus

The aqueous extract of yerba mate, a South American tea beverage made from Ilex paraguariensis leaves, has demonstrated bactericidal and inhibitory activity against bacterial pathogens, including methicillin-resistant Staphylococcus aureus (MRSA). The gas chromatography-mass spectrometry (GC-MS) ana...

2015-03-19 | MTBLS170 | MetaboLights

The enduring effects of early-life HFHS exposure and microbiota-targeted interventions on blood metabolome in adult female and male mice

Blood metabolomics of 12-week-old female and male C57BL/6J mice that were exposed to either a control or an unhealthy high-fat/high-sugar (HFHS) diet during early-life, or early-life HFHS diet supplemented with a microbiota-targeted intervention (either a prebiotic combination (fructo-oligosaccha...

2026-01-27 | MTBLS12714 | MetaboLights

Expression data for UPEC and GBS cystitis in female C57BL/6 mice

Data defines for the first time a whole bladder transcriptome of UPEC cystitis in female C57BL/6 mice using genome-wide expression profiling and temporal analysis to map early host response pathways stemming from UPEC colonization We used microarrays to detail the global programme of gene expression...

ORGANISM(S): Mus musculus

2012-06-30 | E-GEOD-27575 | biostudies-arrayexpress

13K T2D-GENES analysis files

This data set includes the following summary level data files used for the 13k analysis of T2D-GENES data: wes.variants.list: list of variants to keep for any analysis of the exomes data wes.assoc.samples.list: list of samples to keep for association analysis wes.assoc.variants.list: list of variant...

EGAD00010001188 | EGA

TIA1 interactome from mouse cortex

The purpose of this experiment was to characterize the network of proteins that interact with TIA1, and to investigate whether tau exerts control over TIA1 protein interactions, TIA1 was immunoprecipitated from cortical brain tissue of 10 month-old WT (C57BL/6J), tau-/- and TIA1-/- mice. The specifi...

ORGANISM(S): Mus musculus (Mouse)

2018-10-26 | PXD003922 | Pride

Machine learning for grading and prognosis of esophageal dysplasia using mass spectrometry and histological imaging

Background: Barrett’s esophagus (BE) is a precursor lesion of esophageal adenocarcinoma and may progress from non-dysplastic through low-grade dysplasia (LGD) to high-grade dysplasia (HGD) and cancer. Grading BE is of crucial prognostic value and is currently based on the subjective evaluation of bi...

ORGANISM(S): Homo sapiens (Human)

2021-11-15 | PXD028949 | Pride

Deep learning Mass spectrometry imaging H&e staining Barrett’s esophagus Machine learning

GoT2D WGS analysis files

This data set includes the following summary level data files used for the GoT2D WGS analysis: wgs.assoc.samples.list: list of samples to keep for association analysis wgs.assoc.variants.list: list of variants to keep for association analysis wgs.sv.assoc.txt: single variant association results

EGAD00010001185 | EGA

Liver Proteomics of the Hybrid Mouse Diversity Panel

Hepatosteatosis underlies several diseases including type 2 diabetes, cardiovascular disease and liver disease. Unfortunately, our understanding of the contributing pathways that initiate and advance hepatosteatosis to subsequent complications is still poorly understood. Here, we take advantage of r...