Liu Yang Y - OmicsDI

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Unknown (39318)
Proteomics (776)
Transcriptomics (167)
Metabolomics (100)
Genomics (31)
Multiomics (7)
Other (1)

Organisms

Homo sapiens (318)
Mus musculus (136)
Arabidopsis thaliana (11)
Rattus norvegicus (8)
Drosophila melanogaster (8)
Zea mays (6)
Macaca mulatta (5)
Oryza sativa (4)
Gallus gallus (3)
Danio rerio (3)
Bos taurus (3)
Oryza sativa Indica Group (2)
Ovis aries (2)
Nannospalax galili (1)
Rhodococcus opacus (1)
Metarhizium robertsii (1)
Haloferax mediterranei (1)
Bos grunniens (1)
Ketogulonicigenium vulgare (1)
Brassica oleracea (1)
Tetrahymena thermophila (1)
Capra hircus (1)
Bemisia tabaci (1)
Gossypium hirsutum (1)
Dirofilaria immitis (1)
Yersinia pestis (1)
Staphylococcus epidermidis (1)
Geobacter sulfurreducens (1)
Setaria italica (1)
Glycine max (1)

Organisms

Sus scrofa (1)
Mus musculus (1)

Repository

iProX (386)
pride (336)
biostudies-arrayexpress (172)
MetaboLights (96)
MassIVE (34)
EGA (22)
PeptideAtlas (17)
GNPS (4)
jPOST (2)
ENA (2)
geo (1)
GPMDB (1)
NODE (1)
PAXDB (1)

Tissue

Cell culture (80)
Epithelial cell (28)
Liver (25)
Brain (19)
Plant cell (13)
Testis (12)
Plasma Non-glyco (11)
Blood plasma (11)
Heart (11)
Permanent cell line cell (11)
Early embryonic cell (10)
Hepatocyte (9)
Whole body (9)
Blood serum (8)
Lung (7)
Blood cell (6)
Oocyte (6)
HeLa cell (5)
Primary cell (5)
Root (5)
Stem cell (5)
Cell suspension culture (4)
Embryo (4)
Kidney (4)
Others (3)
Blood (3)
Colon (3)
Flower (3)
Leaf (3)
Male Reproductive System (2)

Disease

Disease free (14)
Breast cancer (8)
Colon cancer (8)
Cervix carcinoma (6)
Acute leukemia (5)
Cardiovascular system disease (4)
Liver cancer (4)
Alzheimer's disease (3)
Hepatocellular carcinoma (3)
Prostate adenocarcinoma (3)
Brain glioblastoma multiforme (2)
Disease (2)
Lymphoma (2)
Pancreatic cancer (2)
Type 2 diabetes mellitus (2)
Not Available (1)
Alzheimer's disease 18 (1)
Bladder neck obstruction (1)
Brain cancer (1)
Cancer (1)
Cerebrovascular disease (1)
Cholangiocarcinoma (1)
Chronic obstructive pulmonary disease (1)
Endometrial Endometrioid Adenocarcinoma (1)
Gastric adenocarcinoma (1)
Head and neck squamous cell carcinoma (1)
Lung small cell carcinoma (1)
Male infertility (1)
Malignant neoplasm of ovary (1)
Plasmodium falciparum malaria (1)

Technology Type

Mass Spectrometry (336)
Shotgun proteomics (179)
Mass spectrometry (86)
Bottom-up proteomics (34)
Data-dependent acquisition (32)
Gel-based experiment (30)
Affinity purification coupled with mass spectrometry proteomics (21)
Top-down proteomics (21)
Data-independent acquisition (11)
SWATH MS (11)
Proteogenomics (7)
Mass spectrometry assay (6)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
NMR spectroscopy (4)
Illumina HiSeq 2000, ILLUMINA (2)
Immunopeptidomics (2)
Mass spectrometry imaging (2)
Affymetrix/Illumina (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
DiaPASEF (1)
MSE (1)
Olink affinity proteomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (44)
LTQ Orbitrap Velos (16)
Q Exactive (7)
Orbitrap Fusion Lumos (4)
SepSolve GCxGC-BenchTOF (4)
MS:1000031 (3)
Q Exactive HF (3)
Illumina HiSeq 2000 (2)
LTQ FT (2)
LTQ Orbitrap XL (2)
Agilent GC-qTOF (2)
Orbitrap Fusion ETD (2)
LTQ Orbitrap (2)
Ilumina HiScan H166 (1)
Illumina iScan (1)
Affymetrix Fluidics Station 400 (1)
HiSeq X Ten (1)
Illumina HiSeq 2500 (1)
LCQ Classic (1)
MaXis (1)
Instrument (1)
GCqTOF Agilent (1)
MALDI LTQ Orbitrap (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Pegasus 4D (1)
Q Exactive HF-X (1)
Q Exactive mass spectrometer (Thermo Scientific) (1)
TripleTOF 5600 (1)

Publication Date

2022 (116)
2023 (106)
2025 (100)
2024 (77)
2021 (74)
2020 (60)
2019 (45)
2026 (39)
2015 (38)
2014 (38)
2013 (36)
2012 (32)
2018 (27)
2017 (27)
2016 (22)
2010 (14)
2011 (9)
2009 (8)
2008 (6)
2005 (6)
2007 (5)
2006 (1)

UNIPROT ID/AC

3BHS1_MACMU (1)
9544.ENSMMUP00000000029 (1)
9544.ENSMMUP00000000072 (1)
9544.ENSMMUP00000000075 (1)
9544.ENSMMUP00000000192 (1)
9544.ENSMMUP00000000231 (1)
9544.ENSMMUP00000000270 (1)
9544.ENSMMUP00000000273 (1)
9544.ENSMMUP00000000300 (1)
9544.ENSMMUP00000000331 (1)
9544.ENSMMUP00000000335 (1)
9544.ENSMMUP00000000399 (1)
9544.ENSMMUP00000000400 (1)
9544.ENSMMUP00000000529 (1)
9544.ENSMMUP00000000584 (1)
9544.ENSMMUP00000000645 (1)
9544.ENSMMUP00000000701 (1)
9544.ENSMMUP00000000740 (1)
9544.ENSMMUP00000000788 (1)
9544.ENSMMUP00000000800 (1)
9544.ENSMMUP00000000801 (1)
9544.ENSMMUP00000000832 (1)
9544.ENSMMUP00000000870 (1)
9544.ENSMMUP00000000898 (1)
9544.ENSMMUP00000000905 (1)
9544.ENSMMUP00000000981 (1)
9544.ENSMMUP00000001028 (1)
9544.ENSMMUP00000001049 (1)
9544.ENSMMUP00000001078 (1)
9544.ENSMMUP00000001171 (1)

ENSEMBL ID

ENSG00000170477 (16)
ENSG00000147251 (8)
ENSG00000247315 (5)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:17368 (39)
CHEBI:16704 (38)
CHEBI:30769 (36)
CHEBI:16708 (34)
CHEBI:16335 (34)
CHEBI:17596 (34)
CHEBI:17154 (33)
CHEBI:17568 (33)
CHEBI:17750 (32)
CHEBI:17351 (32)
CHEBI:16750 (31)
CHEBI:15741 (31)
CHEBI:30915 (31)
CHEBI:16737 (31)
CHEBI:15354 (31)
CHEBI:16040 (30)
CHEBI:17509 (30)
CHEBI:16359 (30)
CHEBI:32816 (30)
CHEBI:16196 (29)
CHEBI:7916 (29)
CHEBI:15891 (29)
CHEBI:15756 (29)
CHEBI:17015 (28)
CHEBI:17821 (28)
CHEBI:55328 (28)
CHEBI:16919 (28)
CHEBI:17895 (28)
CHEBI:17748 (27)
CHEBI:16235 (27)

Metabolite Name

Hypoxanthine (26)
Adenosine (23)
Uracil (20)
Adenine (20)
Guanosine (20)
Uridine (20)
Inosine (20)
Creatinine (19)
Cholic acid (18)
Choline (17)
Taurine (17)
Thymidine (17)
Betaine (16)
Xanthine (16)
L-Tyrosine (16)
Indole (15)
Guanine (15)
Uric acid (15)
Cytidine (15)
L-Carnitine (15)
Valine (14)
L-Arginine (14)
Sphinganine (14)
Cytosine (14)
Riboflavin (14)
Creatine (14)
Thymine (13)
L-Proline (13)
Ornithine (13)
L-Histidine (13)

First Public Date

2022 (1)
2014 (1)

Modification

4x(2)H labeled dimethylated L-lysine (2)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (81)
RNA-seq of coding RNA (45)
ChIP-chip by tiling array (10)
Comparative genomic hybridization by array (8)
Other (8)
RNA-seq of non coding RNA (7)
ChIP-seq (4)
Unknown experiment type (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)

Release Date

2025 (6757)
2022 (5641)
2023 (5196)
2024 (5154)
2021 (4081)
2020 (2991)
2019 (2038)
2018 (1652)
2017 (1375)
2016 (1076)
2026 (928)
2015 (830)
2014 (604)
2013 (385)
2012 (301)
2011 (152)
2010 (116)
2009 (74)
2008 (49)
2007 (33)
2006 (21)
2005 (19)
2003 (7)
2004 (4)
2001 (3)
2002 (2)
2000 (1)

Lab affiliation

Institutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China (6)
Professor and Director Center of Proteomic Analysis BGI-Shenzhen (6)
Beijing proteome research center (3)
Department of Clinical Laboratory, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (3)
The University of Sydney (3)
Beijing Key Laboratory of Protein Posttranslational Modifications and Cell Function, Department of Biochemistry and Biophysics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, 100191, China. (2)
CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China (2)
College of Pharmacy, Jinan University, Guangzhou, China (2)
Department of Biochemistry and Structural Biology and Center for Innovative Drug Discovery School of Medicine, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229, United States (2)
Department of Cardiology, Jiangbin Hospital of Guangxi Zhuang Autonomous Region, No. 85 Hedi Road, Nanning, Guangxi, 530021, China (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Department of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China (2)
Nanjing Medical University (2)
National Center for Protein Science Beijing (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Associate Editor, ACS Chemical Biology (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Executive Editor, ACS Chemical Biology (2)
Sencond Military Medical University (2)
Shandong University (2)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
The First Affiliated Hospital, School of Medicine, Zhejiang University (2)
USDA-ARS (2)
West China Second University Hospital, Sichuan University (2)
Xiamen University (2)
westlake.edu.cn (2)
1 Department of Cardiology, Zhongshan Hospital, Fudan University, Shanghai Institute of Cardiovascular Diseases, China. 2 Department of Cardiovascular Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
1 Department of Emergency, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (1)
1 Department of Hepatobiliary & Pancreatic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, 430071, PR China. 2 Clinical Medicine Research Center for Minimally Invasive Procedure of Hepatobiliary & Pancreatic Diseases of Hubei Province, Hubei, PR China. 3 Taikang Center for Life and Medical Sciences of Wuhan University (1)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)

Tags

xref:PubMed:22561152 (1)

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The partial mitochondrial genome of Semidalis anchoroides Liu & Yang, 1993 (Neuroptera: Coniopterygidae).

Not available

S-EPMC11587714 | biostudies-literature

Complete chloroplast genome sequences of Sinosenecio baojingensis Ying Liu & Q.E. Yang (Asteraceae).

Not available

S-EPMC9278445 | biostudies-literature

Complete chloroplast genome of Sinosenecio jishouensis D.G. Zhang, Ying Liu & Q. E. Yang (Asteraceae), a narrow endemic species in Wuling Mountain Region, China.

Not available

S-EPMC7995908 | biostudies-literature

Expression data from mouse skeletal muscle

We generated skeletal muscle-specific knockout mice lacking the transcription factor Yin Yang 1 (YY1) and analyzed expression patterns in the skeletal muscle these mice. We used microarrays to detail the global programme of gene expression regulated by YY1. Wild type or knockout mice at 6 months wer...

ORGANISM(S): Mus musculus

2012-06-29 | E-GEOD-39009 | biostudies-arrayexpress

Phenotypic and transcriptional analysis of the osmotic regulator OmpR in Yersinia pestis

Background The osmotic regulator OmpR in Escherichia coli regulates differentially the expression of major porin proteins OmpF and OmpC. In Yersinia enterocolitica and Y. pseudotuberculosis, OmpR is required for both virulence and survival within macrophages. However, the phenotypic and regulatory r...

ORGANISM(S): Yersinia pestis

2011-10-23 | E-GEOD-26601 | biostudies-arrayexpress

Newly reported chloroplast genome of Sinosenecio albonervius Y. Liu & Q. E. Yang and comparative analyses with other Sinosenecio species.

Not available

S-EPMC9454173 | biostudies-literature

PHSP-Net: Personalized Habitat-Aware Deep Learning for Multi-Center Glioblastoma Survival Prediction Using Multiparametric MRI.

Not available

S-EPMC12467337 | biostudies-literature

Efficacy of Liu-zi-jue in Patients with 2019 Novel Coronavirus Pneumonia (COVID-19): structured summary of a study protocol for a randomized controlled trial.

Not available

S-EPMC7245505 | biostudies-literature

Studies on the Stenothemusharmandi species-group (Coleoptera, Cantharidae), with descriptions of two new species from China.