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TranscriptomicsEffect of lactation on transcriptomic expression in bovine adipose tissue
The objective was to study the transcriptomic changes in adipose tissue in the early stages of lactation, specifically in Bos Taurus, Holstein dairy cattle as a function of milk production and genetic merit. Chip quality backgrounds averaged below 50 units, and 3'/5' bias on control genes < 2.0. Cor...
ORGANISM(S): Bos taurus 
2010-05-27 | E-GEOD-21535 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of G sulfurreducens GGS Fe(III) vs fumarate
G. sulfurreducens (ATCC #51573) was obtained from the laboratory culture collection of Dr. Derek Lovley. Cells were grown under strict anaerobic conditions at 30 °C in chemostats, (see Esteve-Núñez, A., M. M. Rothermich, M. Sharma, and D. R. Lovley. 2004. Growth of Geobacter sulfurreducens under nut...
ORGANISM(S): Geobacter sulfurreducens 
2005-01-01 | E-TIGR-81 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Paxillus involutus, Betula pendula mycorrhizal tissue at five different time points after initial contact between the symbionts
Mycorrhizal tissue was analyzed at five different time points after initial contact between the symbionts had occurred. The experimental design also included reference material grown axenically in parallel during the time course, with the purpose of detecting differential regulation of genes not rel...
ORGANISM(S): Betula pendula 
2005-08-30 | E-MEXP-180 | biostudies-arrayexpress
TranscriptomicsDual RNA-sequencing of nontypeable Haemophilus influenzae and host cell transcriptomes reveals new aspects of host-pathogen interface
Characterization of host-pathogen interactions is critical for the development of next-generation therapies and vaccines. Classical approaches involve the use of transformed cell lines and/or animal models which may not reflect the complexity and response of the human host. We reconstituted the cili...
ORGANISM(S): Haemophilus influenzae 
2015-11-02 | E-GEOD-63900 | biostudies-arrayexpress
TranscriptomicsMyeloid lineage switch in pro-B cells generates novel macrophage subsets during homeostasis and inflammation
Here we demonstrate for the first time evidence of lineage switch from B-1 B lymphocyte to a macrophage , or so-called transdifferentiation, occurring in mature cells in vivo. Specifically, using transgenic B6.Mb1-iCre/Rosa26-YFP mice, in which YFP expression is restricted exclusively to B cell line...
ORGANISM(S): Mus musculus 
2018-09-01 | E-MTAB-1878 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse hypogonadal testis that had been pretreated with testosterone proprionate for 2 weeks then submitted to testosterone withdrawal
Analysis of the transcriptome of testes of hypogonadal mice that had been pretreated with testosterone proprionate for 2 weeks then submitted to testosterone withdrawal.
ORGANISM(S): Mus musculus 
2008-06-13 | E-GEOD-438 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of different tissues of the ECM interaction between Betula pendula and Paxillus involutus grown in peat microcosms containing (NH4)2SO4 nutrient patches
A microarray analysis was conducted to analyze gene expression patterns in different tissues of the ECM interaction between Betula pendula and Paxillus involutus grown in peat microcosms containing (NH4)2SO4 nutrient patches. Expression profiles for mycorrhizal root tips (TIP), rhizomorphs (CORD) an...
ORGANISM(S): Paxillus involutus 
2005-08-01 | E-MEXP-275 | biostudies-arrayexpress
TranscriptomicsWhole genome expression array profiling highlights differences in mucosal defense genes in Barrett's esophagus and esophageal adenocarcinoma.
Esophageal adenocarcinoma (EAC) has become a major concern in Western countries due to rapid rises in incidence coupled with very poor survival rates. One of the key risk factors for the development of this cancer is the presence of Barrett’s esophagus (BE), which is believed to form in response to ...
ORGANISM(S): Homo sapiens 
2011-08-16 | E-GEOD-28302 | biostudies-arrayexpress
TranscriptomicsMurine zymosan-induced peritonitis model
Total RNA was extracted from monocyte and macrophages isolated from the peritoneal cavity of un-inflamed mice or 4, 24, 48 an 72h after mice had been injected with 0.1 or 10mg zymosan
ORGANISM(S): Mus musculus 
2011-07-30 | E-MEXP-3189 | biostudies-arrayexpress
ProteomicsA novel differential ion mobility interface expands the depth of proteome coverage and the sensitivity of multiplex proteomic measurements
We present a new high field asymmetric waveform ion mobility spectrometry (FAIMS) interface that can be coupled to the Orbitrap Tribrid mass spectrometers. The interface provides several advantages over previous generations of FAIMS devices including ease of operation, robustness, and high ion trans...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-04-19 | MSV000082293 | MassIVE
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