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MetabolomicsA metabolic switch orchestrated by IL-18 and the cyclic dinucleotide cGAMP programs intestinal tolerance
Tissues are exposed to diverse inflammatory challenges that shape future inflammatory responses. While cellular metabolism regulates immune function, how metabolism programs and stabilizes immune states within tissues and tunes susceptibility to inflammation is poorly understood. Here, we describe a...
2024-10-25 | MTBLS10416 | MetaboLights
TranscriptomicsSeasonal Changes in Patterns of Gene Expression in Avian Song Control Brain Regions
Photoperiod and hormonal cues drive dramatic seasonal changes in structure and function of the avian song control system. Little is known, however, about the patterns of gene expression associated with seasonal changes. Here we address this issue by exposing GambelM-bM-^@M-^Ys white-crowned sparrows...
ORGANISM(S): Taeniopygia guttata 
2012-10-01 | E-GEOD-28347 | biostudies-arrayexpress
TranscriptomicsTime course RA-treatment of B16 mouse melanoma cells
Time course experiment for treatment of B16 mouse melanoma cells with all-trans retinoic acid Keywords: Time couse Time-course experiment with treatment at 4hr, 10hr, 24hr, and 48hr. Six biological replicates per time point; one biological replicate per array. Dye swap.
ORGANISM(S): Mus musculus 
2008-07-31 | E-GEOD-11580 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis leaves, roots and whole plants grown in high or low phosphate conditions for different lengths of time
The effects of phosphate starvation in Arabidopsis thaliana (L.) plants were compared in plants grown in liquid MS medium transferred in low or high Pi and in plants grown vertically in petri dishes during 10 days. In the transfer experiments, 2 treatments were analysed for evaluating the short-(3, ...
ORGANISM(S): Arabidopsis thaliana 
2006-09-01 | E-MEXP-791 | biostudies-arrayexpress
TranscriptomicsExpression time series during the differentiation of ventral motor neurons from embryonic stem cells
The aim of this study is to profile gene expression dynamics during the in vitro differentiation of embryonic stem cells into ventral motor neurons. Expression levels were profiled using Affymetrix microarrays at six timepoints during in vitro differentiation: ES cells (Day 0), embryoid bodies (Day ...
ORGANISM(S): Mus musculus 
2010-12-10 | E-GEOD-19372 | biostudies-arrayexpress
TranscriptomicsRoot transcriptomes for the 19 parents of the Arabidopsis thaliana MAGIC lines
We produced RNA-Seq reads from messenger RNA isolated from root tissue for the 19 MAGIC founder accessions (inbred strains) of Arabidopsis thaliana (see Gan et al. 2011. Nature 477:419-23 for a description of the MAGIC genetic mapping resource). The read data was generated with biological replicatio...
ORGANISM(S): Arabidopsis thaliana 
2013-12-11 | E-GEOD-53198 | biostudies-arrayexpress
GenomicsA somatic reference standard for cancer genome sequencing with COLO829
Identification of somatic alterations in cancer has become feasible with the massive adoption of next generation sequencing. However, due to variability in sequencing and informatics pipelines, a common somatic reference is needed. We thus performed paired whole genome sequencing of a metastatic mel...
EGAS00001001385 | EGA
ProteomicsTime-resolved Proteome and Metabolome Profiling of Normal Lung Development
Proteomics data from mouse lung; performing unbiased protein and metabolite profiling for normal lung development
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2017-06-22 | MSV000081190 | MassIVE
TranscriptomicsComparative genomic hybridization and transcription profiling of human and mouse T cells in differentiation
ChIP-Chip for T-bet and GATA-3 in human Th1 and Th2 cells, gene expression profiling of human Th1 and Th2 cells and of T-cells from T-bet-deficient mice,
ORGANISM(S): Homo sapiens 
2009-10-26 | E-TABM-759 | biostudies-arrayexpress
TranscriptomicsMultiple tissue RNA sequencing of 17 Arabidopsis thaliana MAGIC founder accessions
We produced RNA-Seq reads from messenger RNA isolated from seedling, root, and floral bud tissue for 17 MAGIC founder accessions (inbred strains) of Arabidopsis thaliana (see Gan et al. 2011. Nature, 477:419-23 for a description of the MAGIC genetic mapping resource). The resulting RNA-Seq data prov...
ORGANISM(S): Arabidopsis thaliana 
2013-12-11 | E-GEOD-53197 | biostudies-arrayexpress
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