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TranscriptomicsHuman NTERA2 (NT2/D1) cells lines: Genomewide distribution of ZRF1 at gene promoters during RA administration
Chip-on-chip experiment with NT2 wildtype cells untreated (0 h) or treated with Retinoic Acid (1h and 3 h) at 0.01 µM. The goal was to determine the genome-wide occupancy of ZRF1 at gene promoters in undifferentiated cells and at the onset of differentiation. Three-condition experiment. Biological ...
ORGANISM(S): Homo sapiens 
2010-12-24 | E-GEOD-16878 | biostudies-arrayexpress
GenomicsChIP-seq using a Dp1 antibody in Drosophila S2R+ cells
Here we report the identification of genomic regions of DNA bound by Dp1 in Drosophila S2R+ cells. Dp1 is a dimerization partner of several E2F transcription factors and is needed for E2F target promoter binding. We find that Dp1 binds the promoter regions of genes important for oxidative phosphoryl...
ORGANISM(S): Drosophila melanogaster 
2013-11-25 | E-GEOD-39393 | biostudies-arrayexpress
TranscriptomicsHuman NTERA2 (NT2/D1) cells lines: shZRF1 vs. shRandom during Retinoic Acid (RA) administration
Transcriptional profiling of human NT2 cell lines comparing control cells (shRandom) with ZRF1 knockdown cells (shZRF1) both either untreated (0 h) or treated with Retinoic Acid (3 h) at 0.01 M-BM-5M. The cell lines were established by retroviral infection allowing for the transcription of either a ...
ORGANISM(S): Homo sapiens 
2010-12-24 | E-GEOD-16858 | biostudies-arrayexpress
GenomicsChanges in H3K4 methylation in KDM5A/JARID1A/RBP2 knockout cells.
We sought to determine H3K4me3 distribution in mouse embryonic stem (ES) cells deficient for RBP2 compared with wild-type cells. RBP2 modifies methylated lysine residues on histone tails. As a result of this analysis, we identified genomic regions with changed H3K4me3 status and described these in g...
ORGANISM(S): Mus musculus 
2015-08-12 | E-GEOD-28348 | biostudies-arrayexpress
UnknownGenome-wide identification of genes likely to be involved in human genetic disease.
Not available
S-EPMC434425 | biostudies-literature
UnknownSample-level enrichment analysis unravels shared stress phenotypes among multiple cancer types.
Not available
S-EPMC3446278 | biostudies-literature
UnknownImproving the assessment of the outcome of nonsynonymous SNVs with a consensus deleteriousness score, Condel.
Not available
S-EPMC3071923 | biostudies-literature
UnknownGitools: analysis and visualisation of genomic data using interactive heat-maps.
Not available
S-EPMC3094337 | biostudies-literature
UnknownFunctional impact bias reveals cancer drivers.
Not available
S-EPMC3505979 | biostudies-literature
UnknownDifferences in the evolutionary history of disease genes affected by dominant or recessive mutations.
Not available
S-EPMC1534034 | biostudies-literature
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