Louie M M - OmicsDI

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Unknown (372)
Transcriptomics (6)
Proteomics (6)
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Organisms

Homo sapiens (5)
Mycobacteroides abscessus ATCC 19977 (2)
Ignicoccus hospitalis KIN4/I (1)
Aureococcus anophagefferens (1)
Viruses (1)
Escherichia coli O157:H7 (1)
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Candidatus Nanopusillus acidilobi (1)

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Pseudomonas sp. CES (1)

Repository

biostudies-arrayexpress (6)
pride (5)
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Tissue

Ewing's sarcoma cell line (1)
HEK-293 cell (1)
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Osteosarcoma cell line (1)

Technology Type

Mass Spectrometry (5)
Mass spectrometry (3)
Shotgun proteomics (3)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (2)
Q Exactive (1)
LTQ Orbitrap Pro (1)
Liquid Chromatography MS - negative - reverse phase (1)
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CHEBI ID

CHEBI:16113 (2)
CHEBI:46898 (2)
CHEBI:131427 (1)
CHEBI:131924 (1)
CHEBI:131977 (1)
CHEBI:132032 (1)
CHEBI:132033 (1)
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CHEBI:134113 (1)
CHEBI:134548 (1)
CHEBI:134594 (1)
CHEBI:134603 (1)
CHEBI:137334 (1)
CHEBI:137569 (1)
CHEBI:137570 (1)
CHEBI:138352 (1)
CHEBI:140418 (1)
CHEBI:140899 (1)
CHEBI:141288 (1)
CHEBI:141290 (1)
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CHEBI:144943 (1)
CHEBI:145970 (1)
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CHEBI:15843 (1)
CHEBI:16196 (1)
CHEBI:167006 (1)

Metabolite Name

1-O-dodecylglycerol (1)
1_CUDA iSTD (1)
1_Ceramide d18:1/17:0; iSTD (1)
1_FA 16:0-d3; iSTD (1)
1_LPC 17:0; iSTD (1)
1_MAG 17:0/0:0/0:0; iSTD (1)
C55 isopentenyl phosphate (1)
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Ceramide d42:2; A (1)
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FA 10:0; (capric acid) (1)
FA 11:0; (undecylic acid) (1)
FA 12:0; (lauric acid) (1)
FA 13:0; (tridecylic acid) (1)
FA 14:0; (myristic acid) (1)
FA 14:1; (physeteric acid) (1)
FA 15:0; (pentadecylic acid) (1)
FA 16:0; (palmitic acid) (1)
FA 16:1; (palmitoleic acid) (1)

First Public Date

2020 (1)

Study type

Transcription profiling by array (5)
Transcription profiling by SAGE (1)

Release Date

2023 (40)
2025 (37)
2024 (37)
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2018 (29)
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2000 (1)

Lab affiliation

Center for Network Systems Biology, Boston University, USA (1)
Department of Pharmacotherapy and Translational Research, College of Pharmacy, University of Florida, Orlando, FL (1)
Institute of Human Genetics, Jena University Hospital, Friedrich Schiller University, Am Klinikum 1, 07747 Jena, Germany Center for Rare Diseases, University Hospital Jena, Friedrich Schiller University, Am Klinikum1, 07747 Jena, Germany (1)
Professor and Deputy Director, Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore 575018, India (1)
University of Oxford, Nuffield Department of Medicine, Target Discovery Institute (1)

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xref:EuropePMC:PMC7348019 (1)

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Reanalysis of Data-dependent acquisition based proteomic datasets of Mycobacterium abscessus

Detection of species-specific proteotypic peptides for accurate and easy characterization of infectious non-tuberculous mycobacteria such as Mycobacterium abscessus is essential. Therefore, we carried out reanalysis of publicly available M. abscessus proteomic dataset MSV000085363, PXD015680 and PXD...

ORGANISM(S): Mycobacterium abscessus (strain ATCC 19977 / DSM 44196 / CIP 104536 / JCM 13569 / NCTC 13031 / TMC 1543)

2024-03-07 | PXD045930 | Pride