Lowe C C - OmicsDI

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Unknown (1622)
Transcriptomics (66)
Proteomics (28)
Genomics (22)
Genomic (1)
Metabolomics (1)

Organisms

Homo sapiens (69)
Mus musculus (31)
Fusarium graminearum PH-1 (2)
Pyrobaculum aerophilum (1)
Xenopus tropicalis (1)
Pan paniscus (1)
Glycine max (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Arabidopsis thaliana (1)
Apis mellifera (1)
Bacteria (1)
Bacteroides cellulosilyticus (1)
Bacteroides thetaiotaomicron VPI-5482 (1)
Dysgonomonas gade (1)
Fusarium graminearum (1)
Nitrosopumilus maritimus SCM1 (1)
Rattus norvegicus (1)
Trypanosoma brucei (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (76)
pride (27)
EGA (11)
dbGaP (1)
MassIVE (1)
MetaboLights (1)
ENA (1)

Tissue

Cell culture (5)
Fibroblast (3)
Fungal cell (2)
Hyphal cell (2)
Liver (2)
Blood serum (1)
Cerebral cortex (1)
Embryo (1)
Endothelial cell (1)
Endothelial cell of artery (1)
Epithelial cell (1)
Erythrocyte (1)
Extracellular vesicle (1)
HeLa cell (1)
Head (1)
Heart (1)
Hepatocyte (1)
Hippocampus (1)
Hypha (1)
Insect adult head (1)
Leg muscle (1)
Microglial cell (1)
Skeletal muscle cell (1)
Skin (1)

Disease

Disease free (3)
Normal (1)
Amyotrophic lateral sclerosis (1)
Breast cancer (1)
Hepatocellular carcinoma (1)
Parkinson's disease (1)
Vascular dementia (1)

Technology Type

Mass Spectrometry (27)
Shotgun proteomics (11)
Bottom-up proteomics (7)
Data-dependent acquisition (4)
Data-independent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina 450K, Bisulfite-Seq (1)
Illumina_660K/Illumina_670K (1)
Mass spectrometry (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (3)
Illumina HiSeq 2500 (2)
Illumina MiSeq (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
Q-Exactive (1)
TripleTOF 5600 (1)
QTRAP 5500 (Applied Biosystems) (1)
QTRAP 6500 (Applied Biosystems) (1)

Publication Date

2015 (16)
2013 (14)
2014 (8)
2026 (7)
2012 (7)
2025 (6)
2011 (6)
2010 (6)
2022 (5)
2016 (5)
2020 (4)
2018 (3)
2017 (3)
2023 (3)
2021 (2)
2009 (2)
2005 (2)
2024 (2)
2019 (2)
2008 (1)
2006 (1)

CHEBI ID

CHEBI:15551 (1)
CHEBI:15553 (1)
CHEBI:15555 (1)
CHEBI:15843 (1)
CHEBI:16566 (1)
CHEBI:16893 (1)
CHEBI:19138 (1)
CHEBI:28125 (1)
CHEBI:28158 (1)
CHEBI:28364 (1)
CHEBI:28728 (1)
CHEBI:34151 (1)
CHEBI:3663 (1)
CHEBI:37550 (1)
CHEBI:41509 (1)
CHEBI:44946|CHEBI:73234 (1)
CHEBI:45240 (1)
CHEBI:46898 (1)
CHEBI:47766 (1)
CHEBI:52333 (1)
CHEBI:52449 (1)
CHEBI:52961 (1)
CHEBI:60943 (1)
CHEBI:62107|CHEBI:75976 (1)
CHEBI:63966 (1)
CHEBI:63969 (1)
CHEBI:63970 (1)
CHEBI:63974 (1)
CHEBI:64017 (1)
CHEBI:64485 (1)

Metabolite Name

GD1-d18:1/16:0 (1)
GD1-d18:1/18:0 (1)
GD1-d18:1/20:0 (1)
GD1-d18:1/21:0 (1)
GD1-d18:1/22:0 (1)
GD1-d18:1/22:1 (1)
GD1-d18:1/23:0 (1)
GD1-d18:1/24:0 (1)
GD1-d18:1/24:1 (1)
GD1-d18:1/24:2 (1)
GM1-d18:1/16:0 (1)
GM1-d18:1/24:0 (1)
GM1-d18:1/24:1 (1)
GM3-d18:1/16:0 (1)
GM3-d18:1/18:0 (1)
GM3-d18:1/20:0 (1)
GM3-d18:1/21:0 (1)
GM3-d18:1/22:0 (1)
GM3-d18:1/22:1 (1)
GM3-d18:1/23:0 (1)
GM3-d18:1/24:0 (1)
GM3-d18:1/24:1 (1)
GM3-d18:1/24:2 (1)
GQ1-d18:1/18:0 (1)
GQ1-d18:1/22:0 (1)
GQ1-d18:1/24:0 (1)
GT2-d18:1/16:0 (1)

First Public Date

2014 (1)

Study type

Transcription profiling by array (32)
RNA-seq of coding RNA (11)
ChIP-seq (7)
Methylation profiling by array (6)
RNA-seq of non coding RNA (6)
Other (3)
Comparative genomic hybridization by array (2)
Methylation profiling by high throughput sequencing (2)
Cell line - Single-cell sequencing (1)
Cell line - Methylation microarray (1)
Unknown experiment type (1)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
MicroRNA profiling by array (1)
DNA-seq (1)

Release Date

2022 (199)
2021 (173)
2023 (156)
2025 (140)
2024 (140)
2020 (109)
2019 (101)
2015 (88)
2018 (85)
2014 (71)
2016 (70)
2017 (69)
2013 (57)
2012 (54)
2010 (36)
2011 (35)
2026 (31)
2009 (25)
2008 (17)
2005 (12)
2006 (10)
2007 (9)
2003 (4)
2000 (3)
2002 (2)
2001 (1)
1999 (1)

Lab affiliation

Biosciences Institute, Newcastle University, Newcastle, UK (1)
Cancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York (1)
Centre for Cardiovascular Biology and Disease Research, La Trobe Institute for Molecular Science and Department of Microbiology, Anatomy, Physiology and Pharmacology, School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, VIC, Australia (1)
Chair, Cancer Biology & Genetics Program, SKI; Chair, Geoffrey Beene Cancer Research Center; Investigator, Howard Hughes Medical Institute; (1)
Department of Biochemistry and Chemistry, LIMS, La Trobe University, Kingsbury Drive, Bundoora, Vic 3086, Australia (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. Department of Chemistry, The University of Western Ontario, London, Ontario, Canada. (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. 2 Bioinformatic Solutions Inc., Waterloo, Ontario, Canada. Department of Chemistry, The University of Western Ontario, London, Ontario, Canada. (1)
Department of Chemistry & Chemical Biology, Northeastern University (1)
Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY (1)
Department of Microbiology, Anatomy, Physiology and Pharmacology, School of Agriculture, Biomedicine and Environment, La Trobe University, Melbourne, Australia. La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Australia. (1)
Dept. Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Victoria 3086, Australia. (1)
Dept. of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University (1)
Division of Neuroscience, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester, M13 9PT, UK. Geoffrey Jefferson Brain Research Centre, The Manchester Academic Health Science Centre, Northern Care Alliance NHS Group, University of Manchester, Manchester, M13 9PT, UK. The Lydia Becker Institute of Immunology and Inflammation, University of Manchester, Manchester, M13 9PT, UK. (1)
Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, UK. (1)
Institute for Radiation Biology, Helmholtz Center Munich, German Research Center for Environmental Health GmbH, Neuherberg, Germany (1)
La Trobe Institute for Molecular Science, Department of Biochemistry & Chemistry, La Trobe University, Melbourne, VIC, 3073, Australia. (1)
La Trobe University (1)
MSD International GmBH (Singapore Branch) (1)
Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee; Dow Street, Dundee DD1 5EH, U.K. (1)
Proteomics Unit Spanish National Cancer Research Center (CNIO) (1)
The Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, Victoria, Australia (1)
Translational Genomic Research Institute (1)
University of Bristol (1)
University of Minnesota - Rehabilitation Science (1)
University of New England, Madgwick Drive, Armidale, New South Wales, Australia (1)
University of Oxford (1)
University of Washington (1)