Lu Chen C - OmicsDI

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Unknown (9314)
Proteomics (279)
Transcriptomics (134)
Genomics (112)
Metabolomics (55)
Models (1)
Other (1)

Organisms

Homo sapiens (198)
Mus musculus (56)
Caenorhabditis elegans (24)
Arabidopsis thaliana (8)
Rattus norvegicus (8)
Drosophila melanogaster (5)
Urocitellus parryii (3)
Ovis aries (3)
Actinobacillus pleuropneumoniae (2)
Nicotiana tabacum (2)
Oryza sativa Japonica Group (2)
Macaca mulatta (2)
Zea mays (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Escherichia coli (2)
Spalax carmeli (1)
Aspergillus terreus (1)
Nannospalax galili (1)
Plecoglossus altivelis (1)
Trichinella spiralis (1)
Streptomyces avermitilis (1)
Deinococcus gobiensis (1)
Actinobacillus pleuropneumoniae serovar 1 str. 4074 (1)
Arabidopsis arenosa (1)
Malus domestica (1)
Oryza sativa Indica Group (1)
Oryza sativa (1)
Gallus gallus (1)
Saccharomyces cerevisiae (1)
Sus scrofa (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (172)
pride (165)
iProX (102)
EGA (72)
MetaboLights (53)
MassIVE (12)
GNPS (2)
Cell Collective (1)
geo (1)
GPMDB (1)
ENA (1)

Tissue

Cell culture (55)
Epithelial cell (13)
Liver (8)
Hepatocyte (6)
Permanent cell line cell (6)
Plant cell (5)
Brain (5)
Testis (5)
Whole body (5)
Blood serum (4)
Leaf (4)
Lung (4)
Blood cell (4)
Kidney (3)
Saliva (3)
White adipocyte (2)
Blood vessel endothelial cell (2)
Thallus (2)
Brown adipocyte (2)
Malignant cell (2)
Breast cancer cell line (2)
Melanocyte (2)
Embryonic stem cell (2)
Cerebrospinal fluid (2)
Skin (2)
Heart (2)
Blood plasma (2)
B cell (2)
Blood (2)
Cholangiocarcinoma cell line (1)

Disease

Disease free (8)
Breast cancer (4)
Colon cancer (4)
Acute leukemia (4)
Long COVID (2)
Neuroblastoma (2)
Cervix carcinoma (2)
Melanoma (2)
Liver cancer (2)
Not Available (1)
Endometrial Endometrioid Adenocarcinoma (1)
Aortic dissection (1)
Retinal degeneration (1)
Adenocarcinoma (1)
Diffuse gastric cancer (1)
Hepatocellular carcinoma (1)
Brain glioblastoma multiforme (1)
Cholangiocarcinoma (1)
Lung cancer (1)
Cardiovascular system disease (1)
Brain cancer (1)
Influenza (1)
Renal cell carcinoma (1)
Malignant neoplasm of ovary (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (165)
Shotgun proteomics (79)
Mass spectrometry (47)
Bottom-up proteomics (23)
Data-dependent acquisition (17)
Gel-based experiment (11)
Affinity purification coupled with mass spectrometry proteomics (10)
Top-down proteomics (9)
Data-independent acquisition (6)
SWATH MS (5)
Mass spectrometry assay (4)
Proteogenomics (4)
Affinity proteomics (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
All-ion fragmentation (3)
Illumina HiSeq 2000 (2)
NMR spectroscopy (2)
Olink affinity proteomics (2)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Mass spectrometry imaging (1)
RNA mass spectrometry (1)
Immunopeptidomics (1)
HDMSE (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (23)
Liquid Chromatography MS - positive - reverse phase (22)
Liquid Chromatography MS - negative - hilic (7)
Orbitrap Fusion Lumos (5)
Liquid Chromatography MS - positive - hilic (5)
Q Exactive HF (3)
6540 Q-TOF LC/MS (Agilent) (3)
Liquid Chromatography MS - (3)
API 4000 QTRAP (AB Sciex) (3)
Illumina NovaSeq 6000 (2)
TripleTOF 6600 (2)
TSQ Quantum XLS (Thermo Scientific) (2)
Agilent 5975E GC/MSD (Agilent) (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
Gas Chromatography MS - positive (2)
Illumina Genome Analyzer IIx (1)
BGISEQ-500 (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
Instrument (1)
Q-TOF mass spectrometer (maXis impact, Bruker) (1)
Orbitrap Fusion ETD (1)
LTQ Orbitrap Elite (1)
Q Exactive (1)
Q Exactive Plus (1)
Quattro micro API (Waters) (1)
Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)
Liquid Chromatography MS -neg - hilic (1)

Publication Date

2022 (47)
2023 (43)
2025 (41)
2024 (40)
2011 (37)
2021 (35)
2026 (29)
2014 (27)
2012 (26)
2020 (26)
2016 (23)
2013 (21)
2010 (16)
2019 (15)
2015 (14)
2017 (10)
2018 (8)
2009 (8)
2007 (2)

CHEBI ID

CHEBI:16704 (20)
CHEBI:15741 (19)
CHEBI:17368 (19)
CHEBI:30769 (17)
CHEBI:17596 (17)
CHEBI:16750 (17)
CHEBI:16919 (17)
CHEBI:7916 (16)
CHEBI:17568 (16)
CHEBI:16335 (16)
CHEBI:16708 (16)
CHEBI:17351 (15)
CHEBI:15971 (15)
CHEBI:15891 (15)
CHEBI:17509 (15)
CHEBI:18012 (15)
CHEBI:15756 (15)
CHEBI:6650 (15)
CHEBI:28997 (14)
CHEBI:17895 (14)
CHEBI:55328 (14)
CHEBI:17015 (14)
CHEBI:15354 (14)
CHEBI:16196 (13)
CHEBI:16828 (13)
CHEBI:17295 (13)
CHEBI:16393 (13)
CHEBI:17821 (13)
CHEBI:17750 (13)
CHEBI:27897 (13)

Metabolite Name

Hypoxanthine (17)
Creatine (15)
Adenosine (13)
L-Histidine (13)
Inosine (13)
Uracil (12)
Adenine (11)
Taurine (11)
L-Arginine (11)
Riboflavin (10)
Cytosine (10)
Choline (10)
Guanosine (10)
Valine (9)
Leucine (9)
Thymine (9)
L-Tyrosine (9)
Alanine (9)
Pyridoxine (9)
L-Phenylalanine (9)
Pyroglutamic acid (9)
Uridine (9)
Betaine (8)
Genistein (8)
Nicotinamide (8)
Methionine (8)
Cholic acid (8)
Phenylalanine (8)
Linoleic acid (8)
L-Tryptophan (8)

First Public Date

2014 (1)

Modification

Not available (1)

Study type

Transcription profiling by array (84)
ChIP-seq (34)
RNA-seq of coding RNA (26)
RNA-seq of non coding RNA (7)
Comparative genomic hybridization by array (5)
Methylation profiling by high throughput sequencing (5)
Other (4)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (2)
Transcription profiling by SAGE (1)
Transcription profiling by RT-PCR (1)
RNA-seq of total RNA (1)

Release Date

2025 (1363)
2022 (1229)
2024 (1179)
2023 (1056)
2021 (1004)
2020 (705)
2019 (505)
2018 (441)
2017 (365)
2016 (341)
2015 (296)
2014 (222)
2026 (201)
2013 (163)
2012 (153)
2011 (109)
2010 (55)
2009 (40)
2008 (23)
2007 (13)
2005 (7)
2006 (6)
2002 (5)
2004 (2)
2003 (1)
2000 (1)

Lab affiliation

Institute of Clinical Medicine in National Yang-Ming Chiao Tung University, Taiwan (Muh-Hwa Yang Lab) (3)
Huazhong Agricultural University (3)
Department of Molecular & Integrative Physiology,University of Michigan Medical School, 5325 Brehm Tower, 1000 Wall St., Ann Arbor, MI, 48105 (3)
Sichuan University (3)
Department of Radiation Oncology, Shanghai Proton and Heavy Ion Center, Fudan University Cancer Hospital, China (2)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (2)
New Cornerstone Science Laboratory, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, China (2)
Institute of Medical Biology, Chinese Academy of Medical Science and Peking Union Medical School, Kunming, China. (2)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
The First Affiliated Hospital of Fujian Medical University (2)
Mayo Clinic, Department of Oncology (2)
University of Science and Technology of China (2)
State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Ningbo University, Ningbo, Zhejiang 315211, China (2)
School of Pharmaceutical Science and Technology, Tianjin University, Tianjin 300072, China (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College (2)
Fudan University (2)
Cyrus Tang Medical Institute, Soochow University, Suzhou 215123, China. (2)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (2)
School of Pharmaceutical Science and Technology, Tianjin University (1)
The Second Affiliated Hospital of Zhejiang University, Medicine Cancer Institute (1)
School of Basic Medical Science, Central South University (1)
Department of Gynecological Oncology, Tongji Hospital, Tongji Medical College,Huazhong University of Science and Technology (1)
Key Laboratory of Chinese Ministry of Agriculture for Nuclear-Agricultural Sciences, Institute of Nuclear-Agricultural Sciences, Zhejiang University, China (1)
Center for Cultivation of Subtropical Forest Resources (CCSFR), Zhejiang A & F University, Linan, Hangzhou, 311300, People's Republic of China. (1)
Nanjing First Hospital (1)
Run Run Shaw Hospital, Zhejiang University School of Medicine (1)
Laboratory of Genetics, University of Wisconsin-Madison, Madison, WI, USA Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA (1)
Beijing Institute of Genomics, Chinese Academy of Sciences, China National Center for Bioinformation (1)
CAS Center for Excellence in Molecular Plant Science, Chinese Academic on Science (1)

Tags

xref:PubMed:22561152 (1)

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Expression analysis of Streptomyces avermitilis NRRL8165 delta-aveI mutant

Investigation of whole genome gene expression level changes in Streptomyces avermitilis delta-aveI mutant, compared to the wild-type strain. The mutants analyzed in this study are further described in Chen L, Lu Y., Chen J, Zhang W, Shu D, Qin Z, Yang S, Jiang W. (2008) Characterization of a negativ...

ORGANISM(S): Streptomyces avermitilis

2010-05-16 | E-GEOD-16892 | biostudies-arrayexpress

Gene expression in epithelial and non-epithelial cells of renal origin

We aimed to define epithelial-specific genes in the kidney. In the developing mouse kidney at E12.5 epithelial cells are restricted to the ureteric bud, while mesenchymal cells surrounding the ureteric bud are non-epithelial. The mouse renal epithelial cell line mIMCD-3 was used to represent kidney ...

ORGANISM(S): Mus musculus

2010-09-23 | E-GEOD-24295 | biostudies-arrayexpress

Stable Unpaired Electron States in the Lu-Lu Bond Leading to the Absence of Odd-Even Parity in the Kondo Effect of Lu<sub>2</sub>@C<sub>82</sub> Transistors.

Not available

S-EPMC12005644 | biostudies-literature

Interleukin-18 genetic polymorphisms contribute differentially to the susceptibility to Crohn's disease.

Not available

S-EPMC4515852 | biostudies-literature

Integrated microbiome-metabolome-genome axis data of Laiwu and Lulai pigs

Excessive fat deposition can trigger metabolic diseases, and it is crucial to identify factors that can break the link between fat deposition and metabolic diseases. Healthy obese Laiwu pigs (LW) are high in fat content but resistant to metabolic diseases. In this study, we compared the fecal microb...

2023-04-20 | MTBLS3977 | MetaboLights

Synthesis and evaluation of a new bifunctional NETA chelate for molecular targeted radiotherapy using(90)Y or(177)Lu.

Not available

S-EPMC4670554 | biostudies-literature

Synthesis and comparative biological evaluation of bifunctional ligands for radiotherapy applications of (90)Y and (177)Lu.

Not available

S-EPMC4376478 | biostudies-literature

A placebo-controlled trial of dextromethorphan as an adjunct in opioid-dependent patients undergoing methadone maintenance treatment.

Not available

S-EPMC4540107 | biostudies-literature

Linked PNPLA3 polymorphisms confer susceptibility to nonalcoholic steatohepatitis and decreased viral load in chronic hepatitis B.

Not available