Lu Li L - OmicsDI

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Unknown (13704)
Proteomics (306)
Transcriptomics (222)
Metabolomics (76)
Genomics (66)
Models (5)
Multiomics (3)

Organisms

Homo sapiens (235)
Mus musculus (100)
Rattus norvegicus (12)
Arabidopsis thaliana (11)
Drosophila melanogaster (7)
Oryza sativa Japonica Group (5)
Escherichia coli (5)
Saccharomyces cerevisiae (4)
Mus sp. (3)
Urocitellus parryii (3)
Macaca mulatta (3)
Oryza sativa (3)
Arachis hypogaea (2)
Actinobacillus pleuropneumoniae (2)
Nicotiana tabacum (2)
Pseudomonas aeruginosa PAO1 (2)
Ovis aries (2)
Sus scrofa (2)
Escherichia coli K-12 (1)
Mammalia (1)
Spalax carmeli (1)
Pseudomonas phage PaP1 (1)
Actinobacillus pleuropneumoniae serovar 3 str. JL03 (1)
Aspergillus terreus (1)
activated sludge metagenome (1)
Nannospalax galili (1)
Chenopodium amaranticolor (1)
Vitis labrusca x Vitis vinifera (1)
Streptomyces avermitilis (1)
Brassica oleracea (1)

Organisms

Larimichthys crocea (1)
Pseudomonas aeruginosa PAO1 (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (246)
iProX (171)
pride (119)
MetaboLights (71)
EGA (38)
MassIVE (11)
BioModels (5)
GNPS (5)
LINCS (3)
ENA (3)
jPOST (2)
PanoramaPublic (2)
geo (1)
PeptideAtlas (1)

Tissue

Cell culture (34)
Epithelial cell (6)
Liver (6)
Whole body (6)
Blood cell (4)
Lung (4)
Brain (3)
Embryo (3)
Hepatocyte (3)
Leaf (3)
Permanent cell line cell (3)
Stem cell (3)
Testis (3)
Blood plasma (2)
Byssus (2)
Embryonic stem cell (2)
Kidney (2)
Ovary (2)
Root (2)
Amniotic fluid (1)
Anther (1)
Blood (1)
Blood platelet (1)
Blood serum (1)
Cholangiocarcinoma cell line (1)
Endothelium (1)
Epithelial ovarian cancer cell (1)
Schwann cell (1)
T cell (1)
T-cell acute lymphoblastic leukemia cell (1)

Disease

Breast cancer (4)
Acute leukemia (3)
Lung adenocarcinoma (2)
Malignant neoplasm of ovary (2)
Wounds and Injuries (2)
Schizophrenia (1)
Antenatal onset (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
Cardiovascular system disease (1)
Cholangiocarcinoma (1)
Hepatocellular carcinoma (1)
Hydronephrosis (1)
Hyperhomocysteinemia (1)
Lymphoma (1)
Malaria (1)
Mixed disorder as reaction to stress (1)
Neuroblastoma (1)
Ovarian cancer (1)
Prostate cancer (1)
Schistosomiasis (1)

Technology Type

Mass Spectrometry (119)
Mass spectrometry (61)
Shotgun proteomics (54)
Gel-based experiment (17)
Affinity purification coupled with mass spectrometry proteomics (14)
Bottom-up proteomics (12)
Data-dependent acquisition (9)
Top-down proteomics (8)
Mass spectrometry assay (7)
Illumina HiSeq 2000 (3)
Chemiluminescence (3)
ELISA (3)
NMR spectroscopy (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SWATH MS (3)
All-ion fragmentation (2)
Data-independent acquisition (2)
Affymetrix/Illumina (1)
Illumina MiSeq, ILLUMINA (1)
AB SOLiD System 3.0 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Glycoproteomics (1)
Immunopeptidomics (1)
Proteogenomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (29)
Liquid Chromatography MS - positive - reverse phase (27)
Liquid Chromatography MS - negative - hilic (8)
Liquid Chromatography MS - positive - hilic (7)
Liquid Chromatography MS - (6)
Illumina NovaSeq 6000 (5)
Q Exactive (4)
Illumina HiSeq 2000 (3)
6540 Q-TOF LC/MS (Agilent) (3)
Liquid Chromatography MS - alternating - reverse phase (3)
Illumina HiSeq 4000 (2)
Orbitrap Fusion Lumos (2)
Q Exactive HF (2)
TripleTOF 6600 (2)
Agilent 5975E GC/MSD (Agilent) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - - reverse phase (2)
Bruker (2)
Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer II (1)
DNBSEQ-T7 (1)
Illumina MiSeq (1)
MicrOTOF-Q II (1)
Q Exactive Plus (1)
LTQ XL (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Q Exactive HF-X (1)
SolariX (1)
TripleTOF 5600 (1)

Publication Date

2022 (49)
2024 (47)
2014 (46)
2025 (46)
2016 (36)
2021 (35)
2015 (34)
2023 (34)
2010 (32)
2012 (30)
2019 (27)
2013 (25)
2026 (24)
2020 (24)
2011 (22)
2017 (13)
2018 (12)
2009 (10)
2008 (9)
2007 (4)
2004 (1)

UNIPROT ID/AC

P05132 (3)
Q3U214 (3)
P49593 (1)
Q9UD71 (1)
P07659 (1)
P00573 (1)
P42212 (1)
P16298 (1)
Q08209 (1)
P48454 (1)
Q9UQM7 (1)
P62158 (1)
P17612 (1)
P06208-2 (1)

CHEBI ID

CHEBI:16704 (23)
CHEBI:15741 (21)
CHEBI:17368 (21)
CHEBI:30769 (21)
CHEBI:16750 (19)
CHEBI:7916 (19)
CHEBI:17821 (18)
CHEBI:17568 (18)
CHEBI:15971 (18)
CHEBI:16919 (18)
CHEBI:15354 (18)
CHEBI:17895 (18)
CHEBI:17596 (18)
CHEBI:16708 (17)
CHEBI:6650 (17)
CHEBI:30915 (17)
CHEBI:16335 (16)
CHEBI:17509 (16)
CHEBI:15891 (16)
CHEBI:18012 (16)
CHEBI:17295 (16)
CHEBI:16828 (16)
CHEBI:16811 (15)
CHEBI:28300 (15)
CHEBI:17750 (15)
CHEBI:16015 (15)
CHEBI:33697 (1)
CHEBI:17535 (1)
CHEBI:29108 (1)
CHEBI:33699 (1)

Metabolite Name

Hypoxanthine (16)
Uracil (14)
Creatine (14)
L-Histidine (13)
Adenosine (13)
Guanosine (13)
Uric acid (12)
Inosine (12)
Choline (11)
Glycerophosphocholine (11)
Valine (10)
Thymine (10)
Pyroglutamic acid (10)
Kynurenic acid (10)
L-Arginine (10)
Glutamine (10)
Adenine (10)
Uridine (10)
L-Tyrosine (10)
Betaine (9)
4-Pyridoxic acid (9)
Taurine (9)
Guanine (9)
Cytosine (9)
Riboflavin (9)
Creatinine (9)
L-Phenylalanine (9)
Leucine (8)
Glycine (8)
N6-Acetyl-L-lysine (8)

First Public Date

2015 (2)
2025 (1)

Modelling Approach

Ordinary differential equation model (5)

Lab affiliation

Nankai University (5)
Chongqing Medical University (2)
Department of Biochemistry and Molecular Biology, Capital Medical University, Beijing, 100069, China (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
SJTU (2)
School of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou, 510006, Guangdong, P.R. China. (2)
Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
1. Department of Pharmacology (National Key Laboratory of Frigid Zone Cardiovascular Disease, Key Laboratory of Cardiovascular Research, Ministry of Education), College of Pharmacy, Harbin Medical University (1)
1Department of Hematology, Xiangya Hospital, Central South University, Changsha 410080, China 2NHC Key Laboratory of Carcinogenesis, Department of Microbiology, School of Basic Medical Science, Central South University, Changsha 410078, China (1)
1Department of Physiology and Pharmacology, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada 2 Snyder Institute for Chronic Diseases, Hotchkiss Brain Institute and McCaig Institute for Bone and Joint Health, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada (1)
2011 Collaborative Innovation Center of Tianjin for Medical Epigenetics, Tianjin Key Laboratory of Medical Epigenetics, Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Tianjin Medical University, Tianjin 300070, China. (1)
Advanced Water Management Centre, The University of Queensland (1)
Advanced Water Management Centre, The University of Queensland, St. Lucia, Brisbane, Queensland, Australia, 4072 (1)
Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, College of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, PR China (1)
Assistant Professor, School of Biomedical Sciences, Faculty of Medicine, The University of Hong Kong, HK SAR (1)
Brain Tumor Center, Division of Experimental Hematology and Cancer Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229, USA (1)
Breast Tumor Center Sun Yat-Sen Memorial Hospital Sun Yat-Sen University 107 Yanjiang West Road Guangzhou 510120, P.R.China (1)
Cancer Institute, Fudan University Shanghai Cancer Center (1)
Capital Medical University (1)
Children's Hospital of Philadelphia (1)
China Agricultural University (1)
China National GenBank,BGI-Shenzhen,Shenzhen 518120,China (1)
College of Food Science and Technology, Northwest University, China (1)
College of Horticulture, 737, China Agricultural University, China (1)
College of Life Sciences, Shaanxi Normal University, 710119, Xi'an, China. (1)
College of Life and Environmental Science, Hangzhou Normal University, Hangzhou 310036, China; Zhejiang Provincial Key Laboratory for Genetic Improvement and Quality Control of Medicinal Plants, Hangzhou Normal University, Hangzhou 310036, China (1)
College of Marine Life Sciences, Ocean University of China, Qingdao, China (1)
College of life sciences and technology,Guangxi University (1)
Department of Anesthesiology and Perioperative Medicine, Xijing Hospital,the Fourth Military Medical University, Xi'an 710032, China (1)

IsPrivate

False (5)

Classification

bacteria (1)

Modification

Not available (1)

Study type

Transcription profiling by array (121)
RNA-seq of coding RNA (53)
ChIP-seq (14)
RNA-seq of non coding RNA (14)
Comparative genomic hybridization by array (11)
Methylation profiling by high throughput sequencing (11)
Other (5)
RNA-seq of coding RNA from single cells (4)
Methylation profiling by array (3)
ChIP-chip by tiling array (2)
Transcription profiling by tiling array (2)
Transcription profiling by RT-PCR (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Spatial transcriptomics by high-throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2025 (2080)
2022 (1960)
2024 (1699)
2023 (1664)
2021 (1450)
2020 (1063)
2019 (757)
2018 (628)
2017 (541)
2016 (474)
2015 (382)
2014 (316)
2026 (285)
2013 (208)
2012 (157)
2011 (95)
2010 (72)
2009 (48)
2008 (30)
2007 (13)
2006 (8)
2005 (7)
2004 (5)
2003 (3)
2002 (3)
2001 (1)
1998 (1)

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L-fucose and fucoidan alleviate high-salt diet-promoted acute inflammation

Excessive salt intake is a widespread health issue observed in almost every country around the world. A high salt diet (HSD) has a strong correlation with numerous diseases, including hypertension, chronic kidney disease and autoimmune disorders. However, the mechanisms underlying HSD-promotion o...

2024-02-21 | MTBLS9134 | MetaboLights

3C-seq of HT29 cells with CCAT1-L knockdown or scramble knockdown

CCAT1-L is a highly expressed long noncoding RNA located in the colorectal cancer specific super enhance region about 500 kb upstream of MYC gene. Knockdown of CCAT1-L significantly down-regulated interaction frequency between CCAT1 and MYC locus and repress MYC expression, suggesting a long-range c...

ORGANISM(S): Homo sapiens

2014-02-22 | E-GEOD-55261 | biostudies-arrayexpress

Expression analysis of human melanoma short-term culture WM451-Lu harvested after lentiviral infection with a GFP (control) or SETDB1 (experimental) viral vector

Investigation of expression differences induced by expression of the histone methyltransferase SETDB1 in human melanoma short-term culture WM451-Lu. A six-chip study using total RNA prepared from WM451-Lu melanoma short-term cultures infected with either a lentivirus encoding GFP (control) or SETDB1...

ORGANISM(S): Homo sapiens

2011-01-07 | E-GEOD-26371 | biostudies-arrayexpress

Optimization of the radiosynthesis of the PSMA-targeting drugs [177Lu]Lu-P17-087 and [177Lu]Lu-P17-088 on the MiniLu™ automated module.

Not available

S-EPMC12623512 | biostudies-literature

Lysine catabolic pathways in P. aeruginosa

Among multiple interconnected pathways for L-Lysine (L-Lys) catabolism in pseudomonads, Pseudomonas aeruginosa PAO1 employed the decarboxylase and the transaminase pathways. However, up till now several genes involved in the operation and regulation of these pathways were still missing. Transcriptom...

ORGANISM(S): Pseudomonas aeruginosa PAO1

2015-12-09 | E-GEOD-75502 | biostudies-arrayexpress

Gene expression in epithelial and non-epithelial cells of renal origin

We aimed to define epithelial-specific genes in the kidney. In the developing mouse kidney at E12.5 epithelial cells are restricted to the ureteric bud, while mesenchymal cells surrounding the ureteric bud are non-epithelial. The mouse renal epithelial cell line mIMCD-3 was used to represent kidney ...

ORGANISM(S): Mus musculus

2010-09-23 | E-GEOD-24295 | biostudies-arrayexpress

Expression analysis of Streptomyces avermitilis NRRL8165 delta-aveI mutant

Investigation of whole genome gene expression level changes in Streptomyces avermitilis delta-aveI mutant, compared to the wild-type strain. The mutants analyzed in this study are further described in Chen L, Lu Y., Chen J, Zhang W, Shu D, Qin Z, Yang S, Jiang W. (2008) Characterization of a negativ...

ORGANISM(S): Streptomyces avermitilis

2010-05-16 | E-GEOD-16892 | biostudies-arrayexpress

Based on the Metabolomic Approach the Energy Metabolism Responses of Oriental River Prawn Macrobrachium nipponense Hepatopancreas to Acute Hypoxia and Reoxygenation

Hypoxia represents a major physiological challenge for prawns and is a problem in aquaculture. Therefore, an understanding of the metabolic response mechanism of economically important prawn species to hypoxia and re-oxygenation is essential. However, little is known about the intrinsic mechanisms b...

2021-05-17 | MTBLS584 | MetaboLights

Dose predictions for [¹⁷⁷Lu]Lu-DOTA-panitumumab F(ab')₂ in NRG mice with HNSCC patient-derived tumour xenografts based on [⁶⁴Cu]Cu-DOTA-panitumumab F(ab')₂ - implications for a PET theranostic strategy.

Not available

S-EPMC8360260 | biostudies-literature

The first two complete mitochondrial genomes of Butyriboletus roseoflavus (Hai B. Li & Hai L. Wei) D. Arora & J.L. Frank 2014 (Boletales: Boletaceae) and phylogenetic analysis.

Not available

S-EPMC12207772 | biostudies-literature

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