Lu Peng P - OmicsDI

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Unknown (1106)
Proteomics (61)
Transcriptomics (25)
Genomics (25)
Metabolomics (8)

Organisms

Homo sapiens (46)
Schizophyllum commune H4-8 (24)
Mycobacterium tuberculosis SP7 (24)
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 (24)
Oryza sativa Japonica Group (24)
Rabbit calicivirus (24)
Crotalus durissus terrificus (24)
Eriocheir sinensis (24)
Candidatus Endoriftia persephonae (24)
Mycobacterium tuberculosis SP10 (24)
Mycobacterium tuberculosis SP13 (24)
Cotesia typhae (24)
Mus musculus (12)
Rattus norvegicus (6)
Oryza sativa (2)
Arabidopsis thaliana (2)
Macaca fascicularis fascicularis (2)
Drosophila melanogaster (2)
Macaca mulatta (1)
Pseudomonas aeruginosa PAO1 (1)
Ovis aries (1)
Mycobacterium tuberculosis H37Rv (1)
Saccharomyces cerevisiae (1)
Saccharum officinarum (1)
Human CSF-associated densovirus (1)
Cordyceps militaris CM01 (1)
Klebsiella variicola UCI 18 (1)
Bombyx mori (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Oryctolagus cuniculus (1)

Organisms

Pseudomonas aeruginosa PAO1 (1)

Repository

iProX (35)
biostudies-arrayexpress (32)
pride (24)
EGA (17)
MetaboLights (7)
PeptideAtlas (2)
GNPS (1)
ENA (1)

Tissue

Cell culture (7)
Epithelial cell (4)
Permanent cell line cell (3)
Blood serum (2)
Root (2)
Testis (2)
Lung (2)
Uterine endometrial cancer cell (1)
Kidney cell (1)
Adipose tissue (1)
Fibroblast (1)

Disease

Breast cancer (3)
Lung adenocarcinoma (2)
Endometrial Endometrioid Adenocarcinoma (1)
Glioblastoma (1)
Disease free (1)

Technology Type

Mass Spectrometry (24)
Shotgun proteomics (11)
Mass spectrometry (7)
Affinity purification coupled with mass spectrometry proteomics (7)
Proteogenomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Affymetrix/Illumina (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Gel-based experiment (1)
Data-dependent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (2)
LCQ Classic (2)
MicrOTOF-Q II (1)
Q Exactive (1)
6540 Q-TOF LC/MS (Agilent) (1)
Xevo G2 QTOF (Waters) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2014 (11)
2022 (9)
2026 (8)
2024 (8)
2023 (7)
2016 (6)
2010 (5)
2021 (5)
2015 (4)
2012 (4)
2025 (4)
2011 (3)
2019 (3)
2020 (2)
2017 (2)
2004 (2)
2009 (1)
2018 (1)

UNIPROT ID/AC

Q01532 (1)
P07263-2 (1)
P06208-2 (1)

CHEBI ID

CHEBI:15971 (4)
CHEBI:16027 (4)
CHEBI:17191 (4)
CHEBI:17895 (4)
CHEBI:17295 (4)
CHEBI:70979 (3)
CHEBI:24266 (3)
CHEBI:18132 (3)
CHEBI:16040 (3)
CHEBI:18257 (3)
CHEBI:16525 (3)
CHEBI:28867 (3)
CHEBI:16750 (3)
CHEBI:41500 (3)
CHEBI:15344 (3)
CHEBI:73067 (3)
CHEBI:16393 (3)
CHEBI:68830 (3)
CHEBI:70749 (3)
CHEBI:35581 (3)
CHEBI:27823 (3)
CHEBI:16235 (3)
CHEBI:16335 (3)
CHEBI:16734 (3)
CHEBI:17509 (3)
CHEBI:16946 (3)
CHEBI:17750 (3)
CHEBI:16467 (3)
CHEBI:17203 (3)
CHEBI:15891 (3)

Metabolite Name

Indole-3-acetaldehyde (2)
Corticosterone (2)
Kynurenic acid (2)
Ornithine (2)
(+/-)12(13)-DiHOME (2)
Taurocholic acid (2)
Docosahexaenoic acid (2)
Indole-3-lactic acid (2)
Arachidonic acid (2)
Azelaic acid (2)
Uric acid (2)
Theanine glucoside (1)
Galloylglucose (1)
Theogallin* (1)
Quinic acid* (1)
Chlorogenic acid* (1)
Caffeoylshikimic acid (1)
4-Coumaroylquinic acid (1)
4-Caffeoylquinic acid (1)
3,5-Di-caffeoylquinic acid (1)
Vitexin* (1)
Rutin* (1)
Quercetin 3-O-galactoside* (1)
Quercetin triglucoside (1)
Quercetin diglucoside (1)
Quercetin 3-O-glucosylrutinoside (1)
Quercetin 3-O-galactosylrutinoside (1)
Myricitrin* (1)
Myricetin 3-galactoside* (1)
Myricetin 3-(3''-galloylrhamnoside) (1)

First Public Date

2015 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (12)
RNA-seq of coding RNA (8)
ChIP-seq (7)
RNA-seq of non coding RNA (3)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)

Release Date

2025 (184)
2022 (163)
2024 (145)
2023 (138)
2021 (118)
2020 (90)
2019 (51)
2017 (45)
2018 (39)
2015 (38)
2014 (29)
2016 (28)
2026 (25)
2012 (13)
2013 (12)
2010 (7)
2011 (5)
2008 (4)
2009 (2)
2001 (2)

Lab affiliation

BGI Research (3)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
Department of Biochemistry and Molecular Biology, Capital Medical University, Beijing, 100069, China (2)
Department of Gynecological Oncology, Tongji Hospital, Tongji Medical College,Huazhong University of Science and Technology (1)
Shanghai Institute of Biochemistry and Cell Biology/Center for Excellence in Molecular Cell Science (1)
Laboratory of Integrative Biology, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences; Guangzhou, 510530, China. (1)
Institute of Medical Biology, Chinese Academy of Medical Sciences, Peking Union Medical College, Kunming, China；State Key Laboratory of Medical Molecular Biology, Department of Molecular Biology and Biochemistry, Institute of Basic Medical Sciences, Medical Primate Research Center, Neuroscience Center, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing, China (1)
Institute of Medical Biology, Chinese Academy of Medical Sciences, Peking Union Medical College, Kunming, China State Key Laboratory of Medical Molecular Biology, Department of Molecular Biology and Biochemistry, Institute of Basic Medical Sciences, Medical Primate Research Center, Neuroscience Center, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing, China (1)
Department of Thoracic Surgery, The Second Affiliated Hospital of Harbin Medical University, China (1)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China, 201203 (1)
Department of Thoracic Surgery, The Second Affiliated Hospital of Harbin Medical University, Harbin 150086, China (1)
College of Agriculture and Food Science, Zhejiang Agriculture & Forestry University (1)
Chinese Academy of Sciences Shanghai Institute of MateriaMedica (1)
Department of Joint Surgery, Xi'an Hong Hui Hospital, Xi'an Jiaotong University Health Science Center, 76 Nanguo Road, Xi'an, Shaanxi, 710054, P.R. China (1)
Tongji Medical College, Huazhong University of Science and Technology (1)
Third Military Medical University (1)
Hangzhou Normal University (1)
Capital Medical University (1)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009, China (1)
Ocean University of China (1)

Tags

pathogen (1)
pathogen:bacterium (1)

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Lysine catabolic pathways in P. aeruginosa

Among multiple interconnected pathways for L-Lysine (L-Lys) catabolism in pseudomonads, Pseudomonas aeruginosa PAO1 employed the decarboxylase and the transaminase pathways. However, up till now several genes involved in the operation and regulation of these pathways were still missing. Transcriptom...

ORGANISM(S): Pseudomonas aeruginosa PAO1

2015-12-09 | E-GEOD-75502 | biostudies-arrayexpress

Flaxseed Mucilage (IQP-LU-104) Reduces Body Weight in Overweight and Moderately Obese Individuals in a 12-week, Three-Arm, Double-Blind, Randomized, and Placebo-Controlled Clinical Study.

Not available

S-EPMC9210019 | biostudies-literature

Hdac3 Interaction with p300 Histone Acetyltransferase Regulates the Oligodendrocyte and Astrocyte Lineage Fate Switch (ChIP-Seq)

Establishment and maintenance of CNS glial cell identity ensures proper brain development and function, yet the epigenetic mechanisms underlying glial fate control remain poorly understood. Here we show that the histone deacetylase Hdac3 controls oligodendrocyte-specification gene Olig2 expression, ...

ORGANISM(S): Rattus norvegicus

2016-02-21 | E-GEOD-76411 | biostudies-arrayexpress

LncRNAs expression signatures of hepatocellular carcinoma revealed by microarray.

Not available

S-EPMC4033470 | biostudies-literature

Palmitic Acid Inhibits the Growth and Metastasis of Gastric Cancer by Blocking the STAT3 Signaling Pathway.

Not available

S-EPMC9856364 | biostudies-literature

Genome-wide maps of Wnt effector Tcf7l2/Tcf4 occupancy in oligodendrocyte during CNS myelination

We performed genome-wide profiling of Tcf7l2 occupancy during oligodendrocyte differentiation and identified the key enzymes involved in cholesterol metabolism and essential for CNS myelination. Examination of Tcf7l2 chIP-seq in oligodendrocyte progenitor cell and 2 differentiation oligodendrocytes...

ORGANISM(S): Rattus norvegicus

2016-02-19 | E-GEOD-65119 | biostudies-arrayexpress

Pseudomonas aeruginosa PAO1

Lysine catabolic pathways in P. aeruginosa

PRJNA305409 | ENA

Genome-wide occupancy of Tcf7l2/Tcf4 in rat and expression profiling of Tcf7l2 mutant and control mice

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Rattus norvegicus

2016-02-19 | E-GEOD-65120 | biostudies-arrayexpress

Hdac3 Interaction with p300 Histone Acetyltransferase Regulates the Oligodendrocyte and Astrocyte Lineage Fate Switch

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Rattus norvegicus

2016-02-21 | E-GEOD-76412 | biostudies-arrayexpress

megamiR, microRNA expression profiles during megakaryocyte-erythrocyte progenitor (MEP) differentiation

This collection contains microRNA expression profiling data for samples purified from umbilical cord blood, belonging to one of the followiing populations: MEP, MEGA1, MEGA2, ERY1, ERY2, ERY3. MEP: megakaryocyte-erythrocyte precursors (defined by CD34+ CD38+ IL-3Ra- CD45RA- ); MEGA1: megakaryocyte p...

ORGANISM(S): Homo sapiens

2010-06-26 | E-GEOD-10593 | biostudies-arrayexpress

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1225 Results

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