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ProteomicsSeminal Fluid Proteins of cactophilic Drosophila
Assessment of the seminal fluid proteins of Drosophila mojavensis and Drosophila arizonae. Experiment was performed using SILAC, whereas D. arizonae males were labeled with L-lysine-2HCL, 4,4,5,5-D4 (Lys 4) and D. mojavensis males labeled with L-Lysine-13C6,15N2 (Lys 8) and mated to their respectiv...
ORGANISM(S): Drosophila arizonae Drosophila mojavensis sonorensis 
2024-06-19 | PXD041260 | Pride
Cactophilic drosophila Seminal fluid proteins 
ProteomicsLINE-1 ORF1p co-immunoprecipitations analyzed by DDA and two DIA methods
Using an anti-ORF1 monoclonal (clone 4H1; Milipore), four co-immunoprecipitations to enrich for LINE-1 ORF1p and its interactors as described in Di Stefano, L.H. et al. (https://doi.org/10.1007/978-1-0716-2883-6_12), from either HEK-293TLD (cells transfected with pMT646- containing a L1 sequence) or...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-07-24 | MSV000095427 | MassIVE
TranscriptomicsGene expression profiles of mouse embryonic stem cells (mESCs) after genetic depletion of Id1 and knock-down of Zrf1
Id proteins are dominant negative regulators within the HLH family of proteins. In embryonic stem cells (ESCs), Id1 and Id3 maintain the pluripotent state by preventing neural differentiation. The Id1-interacting protein Zrf1 plays a crucial role as a chromatin-bound factor in specification of the n...
ORGANISM(S): Mus musculus 
2014-11-05 | E-GEOD-58627 | biostudies-arrayexpress
TranscriptomicsHuman NTERA2 (NT2/D1) cells lines
This SuperSeries is composed of the following subset Series: GSE16858: Human NTERA2 (NT2/D1) cells lines: shZRF1 vs. shRandom during Retinoic Acid (RA) administration GSE16878: Human NTERA2 (NT2/D1) cells lines: Genomewide distribution of ZRF1 at gene promoters during RA administration Refer to indi...
ORGANISM(S): Homo sapiens 
2010-12-24 | E-GEOD-16891 | biostudies-arrayexpress
TranscriptomicsHuman NTERA2 (NT2/D1) cells lines: Genomewide distribution of ZRF1 at gene promoters during RA administration
Chip-on-chip experiment with NT2 wildtype cells untreated (0 h) or treated with Retinoic Acid (1h and 3 h) at 0.01 µM. The goal was to determine the genome-wide occupancy of ZRF1 at gene promoters in undifferentiated cells and at the onset of differentiation. Three-condition experiment. Biological ...
ORGANISM(S): Homo sapiens 
2010-12-24 | E-GEOD-16878 | biostudies-arrayexpress
GenomicsZrf1 is required to establish and maintain neural progenitor identity (ChIP-Seq)
We report ChIP-seq data for Zrf1 and Ring1B occupancy in NPC Examination and comparison of DNA binding profile of Zrf1 and Ring1B in NPC
ORGANISM(S): Mus musculus 
2013-12-21 | E-GEOD-53540 | biostudies-arrayexpress
ProteomicsThe KdmB-EcoA-RpdA-SntB chromatin complex binds regulatory genes and coordinates fungal development with mycotoxin synthesis
Chromatin complexes control a vast number of epigenetic developmental processes. Filamentous fungi present an important clade of microbes with poor understanding of underlying epigenetic mechanisms. Here, we describe a chromatin binding complex in the fungus Aspergillus nidulans composing of a H3K4 ...
ORGANISM(S): Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) 
2022-10-13 | PXD022184 | Pride
A. nidulans Lc-msms 
TranscriptomicsTranscriptional regulation of metabolism associated with desiccation resistance of the cactophilic Drosophila mojavensis
In Drosophila, adaptation to xeric environments presents many challenges, greatest among them the maintenance of water balance. Drosophila mojavensis, a cactophilic species from the deserts of North America, is one of the most desiccation-resistant in the genus, surviving low humidity primarily by ...
ORGANISM(S): Drosophila mojavensis 
2010-05-20 | E-GEOD-16234 | biostudies-arrayexpress
TranscriptomicsThe Polycomb protein Pcgf2/Mel18 regulates mesoderm cell fate-specification of embryonic stem cells through multiple mechanisms
Polycomb complexes are essential regulators of stem cell identity, yet very little is known about their molecular mechanisms during cell differentiation. Pcgf proteins (Pcgf1/2/3/4/5/6) are core subunits of the Polycomb repressive complex 1 (PRC1). It has been recently proposed that specific Pcgf pr...
ORGANISM(S): Mus musculus 
2015-09-04 | E-GEOD-67868 | biostudies-arrayexpress
TranscriptomicsChromatin remodeling and histone mRNA accumulation in bovine germinal vesicle oocytes
The objective of the study was to compare the transcriptome of the bovine oocyte according to the chromatin configuration of the germinal vesicule Bovine oocyte (4 biological replicates) were collected and grouped according to the different chromatin configuration of the germinal vesicule described ...
ORGANISM(S): Bos taurus 
2015-05-05 | E-GEOD-48376 | biostudies-arrayexpress
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