Ma Alice A - OmicsDI

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Unknown (324)
Genomics (45)
Proteomics (32)
Transcriptomics (10)
Metabolomics (4)

Organisms

Homo sapiens (51)
Toxoplasma gondii GT1 (13)
Toxoplasma gondii RH (9)
Zea mays (3)
Mus musculus (3)
Macaca mulatta (2)
Rattus norvegicus (2)
Acropora palmata (1)
Bacillus anthracis (1)
Medicago truncatula (1)
Arabidopsis thaliana (1)
Escherichia coli (1)

Repository

EGA (42)
pride (29)
biostudies-arrayexpress (14)
MetaboLights (4)
PanoramaPublic (3)

Tissue

Cell culture (3)
Astrocyte (1)
Brain (1)
Colon (1)
Epithelial cell (1)
Ileum (1)
Pluripotent stem cell (1)
Skeletal muscle (1)

Disease

Age related macular degeneration (1)
Cachexia (1)
Colon cancer (1)
Crohn's disease (1)
Spinal cord disease (1)

Technology Type

Mass Spectrometry (29)
Shotgun proteomics (28)
Mass spectrometry (2)
Mass spectrometry assay (2)
Illumina HiSeq 2000, Illumina HiSeq 2500 (1)
Data-dependent acquisition (1)
HDMSE (1)
Top-down proteomics (1)

Instrument Platform

ScanArray Express HT [PerkinElmer] (1)
Axon GenePix 4000B scanning hardware (1)
Illumina NovaSeq 6000 (1)
5975C Series GC/MSD (Agilent) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2024 (15)
2022 (6)
2023 (6)
2020 (4)
2013 (3)
2026 (3)
2015 (2)
2014 (2)
2005 (2)
2011 (1)
2010 (1)
2008 (1)
2006 (1)
2021 (1)
2017 (1)

CHEBI ID

CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:17533 (2)
CHEBI:17562 (2)
CHEBI:17754 (2)
CHEBI:17992 (2)
CHEBI:18012 (2)
CHEBI:40521 (2)
CHEBI:45744 (2)
CHEBI:1127735 (1)
CHEBI:127762 (1)
CHEBI:134216 (1)
CHEBI:135063 (1)
CHEBI:1427 (1)
CHEBI:14314 (1)
CHEBI:14336 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)
CHEBI:15355 (1)
CHEBI:15366 (1)
CHEBI:15414 (1)
CHEBI:15422 (1)
CHEBI:15603 (1)
CHEBI:15682 (1)
CHEBI:15713 (1)
CHEBI:15721 (1)
CHEBI:15727 (1)
CHEBI:15728 (1)
CHEBI:15729 (1)
CHEBI:15756 (1)

Metabolite Name

(+)-S,S-Ethambutol (1)
(+)-Thioctic acid (1)
(+)-yohimbine (1)
(+/-)-Camphoric acid (1)
(+/-)-Hesperetin (1)
(+/-)-Metanephrine (1)
(-)-Oxycodone (1)
(-)-Oxymorphone (1)
(-)-Shikimic acid (1)
(-)-secoisolariciresinol (1)
(12-Methyl-7-tetraphenyl)methyl hydrogen sulfate (1)
(2E)-3-(3,4-Dimethoxyphenyl)acrylic acid (1)
(2E)-3-(4-Hydroxy-3-methoxyphenyl)-N-(4-oxobutyl)acrylamide (1)
(2E)-3-Methyl-4-(sulfooxy)-2-butenoic acid (1)
(2E)-N-[2-(Dihydroxymethyl)-4-hydroxy-5-methoxyphenyl]-3-(4-hydroxy-3-methoxyphenyl)acrylamide (1)
(2R)-1-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-3-hydroxy-2-propanyl (6Z,9Z,12Z,15Z)-6,9,12,15-octadecatetraenoate (1)
(2R,3R)-2-(3,4-Dihydroxyphenyl)-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl 4-hydroxybenzoate (1)
(2R,3S)-3-Hydroxy-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylic acid (1)
(2S)-3-(1H-Imidazol-4-yl)-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)propanoic acid (non-preferred name) (1)
(2S)-6-Amino-2-[(E)-(hydroxymethylene)amino]hexanimidic acid (1)
(2Z)-(2,6-Dihydroxy-3,4-dimethoxycyclohexylidene)acetonitrile (1)
(3S)-3-{[(2E)-3-Carboxy-2-propenoyl]oxy}-4-(trimethylammonio)butanoate (1)
(3S)-3-{[(2E)-4-Carboxy-2-butenoyl]oxy}-4-(trimethylammonio)butanoate (1)
(3S,4S)-7,12-Dimethyl-3,4-dihydro-3,4-tetraphenediol (1)
(4-Ethoxyphenyl)urea (1)
(4E)-2-Amino-3-oxo-4-undecenoic acid (1)
(4R,5S,9S,10R,12S,13S)-1,5,9-Trimethyl-11,14,15,16-tetraoxatetracyclo[10.3.1.0~4,13~.0~8,13~]hexadecan-10-ol (1)
(4S)-4-[(2E,4Z)-2,4-Decadienoyloxy]-4-(trimethylammonio)butanoate (1)
(4beta,8alpha,9R)-6'-Methoxycinchonan-3,9-diol (1)
(5R,6Z,8E,10E,12S,14Z)-5,12,20,20,20-Pentahydroxy-6,8,10,14-icosatetraenoic acid (1)

Study type

Transcription profiling by array (5)
ChIP-chip by array (3)
ChIP-seq (3)
RNA-seq of coding RNA (2)

Release Date

2024 (45)
2021 (45)
2023 (42)
2022 (41)
2025 (40)
2019 (27)
2020 (18)
2018 (18)
2016 (18)
2017 (15)
2015 (7)
2013 (5)
2026 (5)
2014 (3)
2011 (3)
2006 (2)
2005 (2)
2010 (1)
2008 (1)

Lab affiliation

Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (11)
Whitehead Institute for Biomedical Research and Department of Biology, Massachusetts Institute of Biology, Cambridge, MA, USA (3)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute for Biomedical Research (2)
Associate Professor, Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (2)
Associate Professor, Department of Biology, Massachusetts Institute of Technology (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and the Whitehead Institute for Biomedical Research (1)
Associate Professor, Whitehead Institute for Biomedical Research and Massachusettes Institute of Technology (1)
Associate Professor, Whitehead Institute for Biomedical Research and Massachusetts Institute for Technology (1)
Dame Kate Campbell Fellow Department of Surgery| Melbourne Medical School Department of Anatomy and Physiology| School of Biomedical Sciences Faculty of Medicine, Dentistry and Health Sciences Medical Building (#181), Grattan Street The University of Melbourne, Victoria 3010 Australia P: +61 3 9035 5464 E: apebay@unimelb.edu.au W: https://medicine.unimelb.edu.au/school-structure/surgery W: https://biomedicalsciences.unimelb.edu.au/departments/anatomy-and-physiology (1)
Hepato-gastroenterology and digestive oncology unit, university Hopsital of Liège and Laboratory of translational gastroenterology GIGA-Research, University of Liège (1)
Laboratoire PRISM INSERM U1192 (1)
Laboratoire PRISM INSERM U1192 Universite de Lille France (1)
Translational Gastroenterology,GIGA institute,University of Liège, Belgium Hepato-Gastroenterology and Digestive Oncology Dep., University hospital of Liège, BE (1)
Translational gastroenterology, GIGA institute, University of Liege ULiege Belgium and Hepatogastro entreology and digestive oncology University hospitalof Liège, CHU Liège (1)

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Observation of an Alice ring in a Bose-Einstein condensate.

Not available

S-EPMC10465595 | biostudies-literature

Neuroimaging markers of Alice in Wonderland syndrome in patients with migraine with aura.

Not available

S-EPMC10520557 | biostudies-literature

PKA C3 immunoprecipitation mass spectrometry

Toxoplasma gondii possesses three protein kinase A (PKA) orthologs. PKA C3 has been implicated as a negative regulator of transformation from the acute stage tachyzoites to the chronic stage bradyzoites. We performed immunoprecipitation of PKA C3 and identified interaction partners by mass spectrome...

ORGANISM(S): Toxoplasma gondii GT1

2024-07-12 | PXD039896 | Pride

Toxoplasma gondii Protein kinase a

Identification of proteins exhibiting TgDegP2-responsive thermal stability

To broadly explore artemisinin susceptibility in apicomplexan parasites, we used genome-scale CRISPR screens recently developed for Toxoplasma gondii to discover sensitizing and desensitizing mutations. From these screens, we identified the mitochondrial protease DegP2, which appeared gDegP2-respons...

ORGANISM(S): Toxoplasma gondii GT1

2020-08-28 | PXD019917 | Pride

Thermal proteome profiling Toxoplasma gondii Cetsa Artemisinin susceptibility

Thermal proteome profiling of Toxoplasma gondii treated with enhancer 1 (ENH1)

reviously, we characterized a chemical modulator, ENH1, that exhibited potent antiparasitic properties against apicomplexans and induced calcium oscillations, but the target eluded identification. To determine the target of ENH1, we employed thermal proteome profiling in parasites. We treated extrac...

ORGANISM(S): Toxoplasma gondii GT1

2023-08-21 | PXD018818 | Pride

Thermal proteome profiling Toxoplasma gondii Cetsa

Thermal proteome profiling of Toxoplasma gondii lysates treated with enhancer 1 (ENH1)

Previously, we characterized a chemical modulator, ENH1, that exhibited potent antiparasitic properties against apicomplexans and induced calcium oscillations, but the target eluded identification. To determine the target of ENH1, we employed thermal proteome profiling in parasites. We treated extra...

ORGANISM(S): Toxoplasma gondii GT1

2020-07-13 | PXD018810 | Pride

Thermal proteome profiling Toxoplasma gondii Cetsa

Chromatin immunoprecipitation of Zea mays chloroplast extracts prepared from wild type and CRP1-deficient tissue

Identification of target transcripts for the putative chloroplast RNA binding protein CRP1 in Zea mays. CRP1 was immunoprecipitated from a chloroplast extract. Chloroplast extracts were prepared from WT and CRP1-deficient tissue. RNA from the pellet and from the supernatant for each pulldown was lab...

ORGANISM(S): Zea mays

2005-08-01 | E-MEXP-282 | biostudies-arrayexpress

Chromatin immunoprecipitation of Zea mays chloroplast extracts prepared from wild type and CAF1-deficient tissue

Immunoprecipitation of the chloroplast splicing factor CAF1 and analysis of bound RNAs with a complete Zea mays cpDNA microarray.

ORGANISM(S): Zea mays

2005-08-01 | E-MEXP-318 | biostudies-arrayexpress

Medicare Advantage Plan Double Bonuses Drive Racial Disparity In Payments, Yield No Quality Or Enrollment Improvements.

Not available

S-EPMC9278554 | biostudies-literature

Characterization of the acoustic community of vocal fishes in the Azores.

Not available

S-EPMC6836754 | biostudies-literature