Ma Bennett B - OmicsDI

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Unknown (1006)
Proteomics (19)
Metabolomics (9)
Transcriptomics (7)
Genomics (3)
Genomic (2)

Organisms

Homo sapiens (16)
Mus musculus (8)
Bathyergus suillus (1)
Saccharomyces cerevisiae (1)
Arabidopsis thaliana (1)
Bos taurus (1)
Brassica oleracea var. botrytis (1)
Cricetulus griseus (1)
Rattus norvegicus (1)
Shigella sonnei (1)

Repository

pride (18)
biostudies-arrayexpress (9)
MetaboLights (9)
dbGaP (2)
EGA (1)
MassIVE (1)

Tissue

Cell culture (8)
Arteriole (2)
Brain (2)
Liver (2)
Blood serum (1)
Epithelial cell (1)
Epithelial cell of cervix (1)
HUVEC cell (1)
Heart (1)
Kidney (1)
Macrophage (1)
Melanocyte (1)
Neuron (1)
Peritoneum (1)

Disease

Alzheimer's disease (2)
Disease free (2)
Non-metastatic melanoma (1)
Cervix carcinoma (1)
Laboratory infectious disease (1)
Melanoma (1)
Uremia (1)

Technology Type

Mass Spectrometry (18)
Shotgun proteomics (14)
Mass spectrometry (9)
Bottom-up proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - (2)
Pacbio Revio (1)
Q Exactive (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)
SYNAPT HDMS (Waters) (1)

Publication Date

2023 (8)
2021 (5)
2019 (4)
2010 (3)
2025 (3)
2026 (2)
2016 (2)
2015 (2)
2017 (2)
2022 (2)
2014 (1)
2013 (1)
2020 (1)
2024 (1)

CHEBI ID

CHEBI:17351 (3)
CHEBI:136085 (2)
CHEBI:16347 (2)
CHEBI:17148 (2)
CHEBI:17750 (2)
CHEBI:17924 (2)
CHEBI:18127 (2)
CHEBI:72998 (2)
CHEBI:132553 (1)
CHEBI:133003 (1)
CHEBI:133221 (1)
CHEBI:133244 (1)
CHEBI:133521 (1)
CHEBI:136088 (1)
CHEBI:136143 (1)
CHEBI:136195 (1)
CHEBI:136241 (1)
CHEBI:136445 (1)
CHEBI:136921 (1)
CHEBI:136922 (1)
CHEBI:136926 (1)
CHEBI:136927 (1)
CHEBI:136930 (1)
CHEBI:136932 (1)
CHEBI:136934 (1)
CHEBI:136935 (1)
CHEBI:136938 (1)
CHEBI:136939 (1)
CHEBI:136941 (1)
CHEBI:136942 (1)

Metabolite Name

D-Sorbitol (2)
Linoleic acid (2)
PC(16:0/0:0) (2)
PC(18:2/18:2) (2)
1,2-bis-O-Sinapoyl-beta-D-glucoside (1)
1,3-diaminopropane (1)
1-Isothiocyanato-6-(methylthio)hexane (1)
10-OPDA (1)
12,13-Epoxylinolenate (1)
12-OPDA/12-oxo-PDA (1)
2,5-Dihydroxybenzoate 2-O-β-D-glucoside (1)
2-Hydroxy-3-butenyl-desulfoglucosinolate (1)
2-Hydroxy-linoleic acid (1)
2-Hydroxymyristic acid (1)
2-Oxindole-3-acetyl-β-D-glucose (1)
2-Oxo-6-methylthiohexanoate (1)
2-Oxo-9-methylthiononanoate (1)
3-Methoxysalicylic acid (1)
3alpha-hydroxy-5alpha-androstan-17-one 3-sulfate (1)
4'-Dihydroabscisic acid (1)
4-Hydroxyglucobrassicin (1)
4-Methoxy-3-indolylmethylamine (1)
4-Methoxyglucobrassicin (1)
4-Methylthiobutanaldoxime (1)
6-Sinapoylglucoraphenin (1)
7-Methylthioheptyl glucosinolate (1)
7-Methylthioheptyl-desulfoglucosinolate (1)
8-(Methylthio)octylisothiocyanate (1)
8-Methylthiooctyl glucosinolate (1)
9-Methylthiononylhydroximoyl-L-cysteine (1)

Modification

+3amu) (1)

Study type

Transcription profiling by array (5)
Human - One-color microarray (1)
ChIP-seq (1)
DNA-seq (1)
RNA-seq of coding RNA (1)

Release Date

2024 (104)
2022 (98)
2023 (94)
2025 (90)
2021 (89)
2018 (86)
2020 (64)
2019 (60)
2015 (55)
2016 (43)
2014 (39)
2017 (39)
2013 (38)
2012 (36)
2010 (20)
2011 (18)
2026 (13)
2009 (13)
2008 (11)
2006 (2)
2007 (1)
2005 (1)
2002 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (3)
Ann Romney Center for Neurologic Diseases, Department of Neurology, Brigham and Women’s Hospital and Harvard Medical School, Boston, MA, USA (2)
Medical University of Vienna (2)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences Bennett Laboratory Mass Spectrometry & Proteomics (1)
Copenhagen Center for Glycomics (CCG), Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Cutaneous Oncology/Tumor Biology Moffitt Cancer Center Tampa, FL, USA (1)
Dana Farber Cancer Institute Boston, MA USA (1)
Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Singapore-MIT Alliance for Research and Technology, Antimicrobial Resistance Interdisciplinary Research Group, Campus for Research Excellence and Technological Enterprise, Singapore 138602, Singapore (1)
Department of Clinical Infection, Microbiology, and Immunology; Institute for Infection, Veterinary, and Ecological Sciences (IVES), University of Liverpool, L69 7ZB, Liverpool, United Kingdom. (1)
Department of Pediatrics and Adolescent Medicine, Medical University of Vienna, Austria (1)
Dr. Andreas Bergthaler Principal Investigator CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences Lazarettgasse 14, AKH BT 25.3 1090 Vienna, Austria (1)
Harvard Medical School, Department of Genetics, Boston 02115 MA, USA (1)
Quantitative Biology Center (QBiC), University of Tübingen, Germany. (1)
University of Manchester (1)

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A comprehensive portrait of tissue-, age- and sex-specific DNA modifications in rodents and humans

DNA damage causes genomic instability underlying many diseases, with traditional analytical approaches providing minimal insight into the spectrum of DNA lesions in vivo. Here we used untargeted chromatography-coupled tandem mass spectrometry-based adductomics (LC-MS/MS) to define the landscape of D...

ORGANISM(S): Homo sapiens (Human) Rattus norvegicus (Rat)

2023-09-12 | PXD045311 | Pride

Adductomics Strp mrm

FASIL-MS: An Integrated Proteomic and Bioinformatic Workflow to Universally Quantitate In vivo-acetylated Positional Isomers

Dynamic changes in histone post-translational modifications (PTMs) regulate gene transcription leading to fine-tuning of biological processes such as DNA replication and cell cycle progression. Moreover, specific histone modifications constitute docking sites for recruitment of DNA damage repair pr...

ORGANISM(S): Bos taurus (Bovine) Homo sapiens (Human)

2016-06-16 | PXD003611 | Pride

Ms2-based quantitation Lysine deacetylase inhibitor Histone acetylation Mass spectrometry N-acetoxy-d3-sucinnimide Fasp Protein derivatisation

Untargeted metabolomics of purple and orange-fleshed sweet potatoes reveals a large structural diversity of anthocyanins and flavonoids

Anthocyanins are economically valuable phytochemicals of significant relevance to human health. Industrially extracted from multiple fruit and vegetable sources, anthocyanin yield and profiles can vary between sources and growing conditions. In this study, we focused on three purple-fleshed and o...

2021-09-01 | MTBLS2956 | MetaboLights

Identification of a GH110 subfamily of alpha 1,3-galactosidases: novel enzymes for removal of the alpha 3Gal xenotransplantation antigen.

Not available

S-EPMC2417185 | biostudies-literature

Quality of life of older patients with early-stage breast cancer receiving adjuvant chemotherapy: a companion study to cancer and leukemia group B 49907.

Not available

S-EPMC3068052 | biostudies-literature

A PIK3C3-ankyrin-B-dynactin pathway promotes axonal growth and multiorganelle transport.

Not available

S-EPMC4274267 | biostudies-literature

Does it really matter that I do not remember my night? Consequences related to blacking out among college student drinkers.

Not available

S-EPMC10834833 | biostudies-literature

Pre-clinical validation of B cell maturation antigen (BCMA) as a target for T cell immunotherapy of multiple myeloma.

Not available

S-EPMC5995247 | biostudies-literature

Profiles of alcohol intoxication and their associated risks in young adults' natural settings: A multilevel latent profile analysis applied to daily transdermal alcohol concentration data.

Not available

S-EPMC12049083 | biostudies-literature

RGA binding sites in Arabidopsis thaliana seedlings

DELLA proteins act as hubs that relay environmental information to the multiple transcriptional circuits that control growth and development through physical interaction with transcription factors from different families. We have analyzed the presence of one DELLA protein at the Arabidopsis genome b...

ORGANISM(S): Arabidopsis thaliana

2015-07-23 | E-GEOD-59187 | biostudies-arrayexpress

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