Ma Chi C - OmicsDI

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Unknown (955)
Transcriptomics (561)
Genomics (148)
Proteomics (42)
Metabolomics (16)

Organisms

Homo sapiens (261)
Mus musculus (195)
Drosophila melanogaster (44)
Rattus norvegicus (27)
Arabidopsis thaliana (19)
Danio rerio (11)
Saccharomyces cerevisiae (8)
Zea mays (7)
Burkholderia cenocepacia (7)
Bos taurus (5)
Caenorhabditis elegans (5)
Oryza sativa (4)
Solanum tuberosum (4)
Glycine max (4)
Actinoplanes sp. SE50/110 (4)
Escherichia coli (4)
Gallus gallus (4)
Sus scrofa (4)
Felis catus (3)
Bacillus subtilis (3)
Plasmodium falciparum (3)
Miscanthus sinensis (2)
groundwater metagenome (2)
Moniezia expansa (2)
Euphorbia esula (2)
Bacillus subtilis subsp. subtilis str. 168 (2)
Haemophilus influenzae (2)
Macaca mulatta (2)
Oryza sativa Indica Group (2)
Macaca fascicularis (2)

Organisms

Homo sapiens (2)
Mus musculus (1)

Repository

biostudies-arrayexpress (706)
pride (36)
MetaboLights (16)
iProX (4)
ENA (3)
EGA (1)
MassIVE (1)

Tissue

Cell culture (13)
Brain (5)
Epithelial cell (5)
Permanent cell line cell (4)
Whole body (3)
Blood serum (2)
Blood plasma (2)
Microglial cell activation (1)
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Anther (1)
Embryonic stem cell (1)
Bone marrow (1)
Macrophage (1)
Testis (1)
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Hepatocyte (1)
Kidney (1)
Blood cell (1)
Blood (1)

Disease

Breast cancer (4)
Severe acute respiratory syndrome (2)
Glioblastoma (2)
Burn injury (1)
Normal renal cortex (1)
Post-stasis (1)
Breast adenocarcinoma (1)
Control (1)
Cancer (1)
Melanoma (1)
Osteosarcoma (1)
Normal (1)
Retinal degeneration (1)
Stroke (1)
Neuroblastoma (1)
Malignant neoplasm of ovary (1)
Disease free (1)

Technology Type

Mass Spectrometry (36)
Shotgun proteomics (18)
Mass spectrometry (14)
SRM/MRM (5)
RNA mass spectrometry (4)
SWATH MS (4)
Data-dependent acquisition (4)
Bottom-up proteomics (4)
Gel-based experiment (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Mass spectrometry assay (2)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 4000 (16)
Illumina HiSeq 2500 (11)
Illumina NovaSeq 6000 (10)
Illumina MiSeq (7)
NextSeq 500 (7)
Illumina HiSeq 2000 (3)
Bio-Rad CFX96 Real-time System (2)
BD LSRFortessa (2)
Illumina Genome Analyzer II (2)
NextSeq 2000 (2)
Ion Torrent S5 XL (2)
Chromium X instrument (10x Genomics); GEM-X FX Chips (10x Genomics); Agilent TapeStation D1000; qPCR (library quantification kit for Illumina platforms) (1)
Chromium X instrument (10x Genomics); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781); Human Gene Expression Probe Set v1.0.1 (10x Genomics) (1)
Countess 3 FL Automated Cell Counter (Thermo Fisher Scientific; AMQAF2000); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781) (1)
Illumina NovaSeq 6000 sequencing platform (Illumina) (1)
Chromium Controller (10X Genomics) (1)
Lab Chip GX touch HT (Perkin Elmer) (1)
Advanced Sequencing Facility (1)
Epidermal cells : Trypsin dissociation / Dermal cells :MACS Whole Skin Dissociation Kit (1)
See manuscript (1)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (1)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds. (1)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (1)
Chromium Controller (1)
MACS Whole Skin Dissociation Kit (1)
G2565BA DNA microarray scanner [Agilent Technologies] (1)
None (1)
Sequel (1)
Ion Torrent S5 (1)
2100 Bioanalyzer (Agilent, CA, USA), Qubit 2.0 (Invitrogen, Germany) (1)

Publication Date

2010 (102)
2013 (96)
2012 (96)
2011 (73)
2014 (69)
2016 (57)
2015 (52)
2008 (31)
2009 (23)
2019 (20)
2022 (19)
2018 (19)
2023 (15)
2021 (15)
2026 (13)
2020 (13)
2025 (12)
2024 (11)
2007 (11)
2017 (8)
2004 (3)
2006 (2)

CHEBI ID

CHEBI:30805 (5)
CHEBI:18257 (5)
CHEBI:15428 (5)
CHEBI:17497 (5)
CHEBI:30769 (5)
CHEBI:20067 (5)
CHEBI:42504 (4)
CHEBI:29019 (4)
CHEBI:73074 (4)
CHEBI:17822 (4)
CHEBI:25094 (4)
CHEBI:16811 (4)
CHEBI:7676 (4)
CHEBI:16750 (4)
CHEBI:16977 (4)
CHEBI:28842 (4)
CHEBI:15741 (4)
CHEBI:6650 (4)
CHEBI:28044 (4)
CHEBI:17154 (4)
CHEBI:16865 (4)
CHEBI:16335 (4)
CHEBI:17568 (4)
CHEBI:15940 (4)
CHEBI:17509 (4)
CHEBI:7916 (4)
CHEBI:16467 (4)
CHEBI:17203 (4)
CHEBI:17859 (4)
CHEBI:35932 (4)

Metabolite Name

Glycine (4)
Ornithine (4)
Glycerophosphocholine (4)
Norvaline (3)
Glycolic acid (3)
Betaine (3)
Thiamine (3)
Nicotinic acid (3)
L-Arginine (3)
Cholesterol (3)
Nicotinamide (3)
Methionine (3)
Taurine (3)
Citric acid (3)
Lysine (3)
Malic acid (3)
Pipecolic acid (3)
Serine (3)
Adenosine (3)
L-Tryptophan (3)
Glutaric acid (3)
Uric acid (3)
Guanosine (3)
Creatinine (3)
Urea (3)
Creatine (3)
L-Carnitine (3)
L-Valine (3)
L-Tyrosine (3)
Hypoxanthine (3)

First Public Date

2020 (1)
2017 (1)
2013 (1)

Study type

Transcription profiling by array (307)
ChIP-seq (130)
RNA-seq of coding RNA (77)
ChIP-chip by tiling array (47)
Comparative genomic hybridization by array (23)
Methylation profiling by array (23)
ChIP-chip by array (17)
Other (12)
RNA-seq of coding RNA from single cells (11)
Methylation profiling by high throughput sequencing (10)
RNA-seq of non coding RNA (9)
Transcription profiling by tiling array (6)
Genotyping by array (6)
Unknown experiment type (4)
DNA-seq (4)
Cell line - High-throughput sequencing (3)
MicroRNA profiling by high throughput sequencing (3)
Human - One-color microarray (2)
RNA-seq of total RNA (2)
Baseline (1)
Animal - One-color microarray (1)
Human - Methylation microarray (1)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
RIP-seq (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)

Release Date

2025 (142)
2023 (130)
2022 (117)
2024 (115)
2013 (115)
2012 (112)
2021 (109)
2010 (107)
2014 (100)
2015 (96)
2016 (91)
2011 (86)
2020 (67)
2019 (66)
2018 (65)
2017 (39)
2008 (35)
2009 (28)
2026 (20)
2007 (13)
2004 (5)
2006 (2)
1999 (1)

Lab affiliation

Underwood-Prescott Professor, Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, 56-731 Cambridge, MA 02139-4307 (4)
Duke University (2)
Department of Translational Research in Psychiatry Max Planck Institute of Psychiatry, Munich (2)
Shandong Academy of Agricultural Sciences, Jinan, Shandong, China (2)
Institute of Molecular and Cellular Biology, National Taiwan University (1)
Head of Laboratory of Neuro-Oncology Clinical & Cancer Proteomics the Netherlands (1)
Department of Applied Chemistry, Chaoyang University of Technology, 168 Jifong East Road, Wufong, Taichung 41349, Taiwan (1)
The University of Hong Kong, Department of Chemistry, Chemical Biology Centre and State Key Laboratory of Synthetic Chemistry (1)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen (Denmark) (1)
Department of Neurology,Neurosciences Centre,All India Institute of Medical Sciences,Ansari Nagar, New Delhi-110029, India (1)
Cancer Stem Cell and Translation Medicine Lab, Innovative Cancer Drug Research and Development Engineering Center of Liaoning Province, Department of Oncology, Shengjing Hospital of China Medical University, Shenyang, 110004, China (1)
National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, China (1)
Department of Horticulture, Zijingang Campus, Zhejiang University, China (1)
Epithelial Systems Biology Laboratory, National Heart, Lung, and Blood Institute, NIH, Bethesda, MD, USA (1)
Department of Pharmacology Cancer Biology Institute Yale University School of Medicine (1)
Duke University Dept of Biochemistry (1)
Department of Andrology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510080, China (1)
Sun Yat-Sen University (1)
The Hong Kong Polytechnic University (1)
1Department of Chemistry, Georgia State University, Atlanta, GA (1)
Department of Immunobiology, University of Lausanne, Switzerland (1)
School of Optometry, The Hong Kong Polytechnic University, Hong Kong (1)
Institute of Computing Technology, CAS (1)
Département de Neurochirurgie, CHU Angers, Angers, France Inserm UMR 1307, CNRS UMR 6075, Université de Nantes, CRCI2NA, Université d'Angers, Angers, France (1)
Department of Chemistry and Chemical Biology, Barnett Institute of Chemical & Biological Analysis, Northeastern University, Boston, MA, United States (1)
School of Medicine, College of Medicine, Fu Jen Catholic University, New Taipei, Taiwan (1)
Proteomics and Biomarkers, Department of Translational Research in Psychiatry, Max Planck Institute of Psychiatry, Munich (1)
Max Planck Institute of Psychiatry Department of Translational Research in Psychiatry (1)
Micalis Institute AgroParisTech INRA 78350 Jouy-en-Josas (1)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)

Tags

xref:PubMed:17109755 (1)
xref:PubMed:17822919 (1)
xref:PubMed:32611366 (1)

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Effect of AMPK activation by AICAR on MA-10 Leydig cell transcriptome

Steroid hormones regulate essential physiological processes and inadequate levels are associated with various pathological conditions. In testosterone-producing Leydig cells, steroidogenesis is strongly stimulated by LH via its receptor leading to increased cAMP production and expression of the ster...

ORGANISM(S): Mus musculus

2014-08-19 | E-GEOD-50118 | biostudies-arrayexpress

Differential gene expression profiling of MIHA cells transfected with C-terminal truncated HBx mutants

To compare the differentially expressed transcriptomes between MIHA cells transfected with empty vector control or different C-terminal truncated HBx mutants (14 or 35 amino acid carboxyl-terminal truncation - i.e. d14 and d35) mRNA profiles of MIHA cells stably overexpressing empty vector control o...

ORGANISM(S): Homo sapiens

2016-08-02 | E-GEOD-71993 | biostudies-arrayexpress

A randomized trial of tai chi for fibromyalgia.

Not available

S-EPMC3023168 | biostudies-literature

Effects of Tai Chi versus Physical Therapy on Mindfulness in Knee Osteoarthritis.

Not available

S-EPMC5612617 | biostudies-literature

Novel targets for the transcription factors MEF2 in MA-10 Leydig cells

Testosterone production by Leydig cells is a tightly regulated process requiring synchronized expression of several steroidogenic genes by numerous transcription factors. Myocyte enhancer factor 2 (MEF2) is a transcription factor recently identified in somatic cells of the male gonad. In other tissu...

ORGANISM(S): Mus musculus

2015-04-12 | E-GEOD-64128 | biostudies-arrayexpress

Tai Chi is effective in treating knee osteoarthritis: a randomized controlled trial.

Not available

S-EPMC3023169 | biostudies-literature

The positioning of Chi sites allows the RecBCD pathway to suppress some genomic rearrangements.

Not available

S-EPMC6393298 | biostudies-literature

Effect of tai chi versus aerobic exercise for fibromyalgia: comparative effectiveness randomized controlled trial.

Not available

S-EPMC5861462 | biostudies-literature

Tai Chi for treating knee osteoarthritis: designing a long-term follow up randomized controlled trial.

Not available

S-EPMC2529300 | biostudies-literature

Transcriptomic analysis of grape (Vitis vinifera L.) leaves exposed to ultraviolet C radiation

Solar ultraviolet C（UV-C）radiation reaching the Earth’s surface is little due to the filtering effects of the stratospheric ozone layer. At present, artificial UV-C irradiation is utilized for different biological processes. Grape is a major fruit crop around the world. Research has shown that UV-C ...

ORGANISM(S): Vitis vinifera

2014-11-15 | E-GEOD-62315 | biostudies-arrayexpress

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