Ma Chi C - OmicsDI

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Unknown (958)
Transcriptomics (558)
Genomics (147)
Proteomics (38)
Metabolomics (17)

Organisms

Homo sapiens (273)
Mus musculus (203)
Drosophila melanogaster (43)
Rattus norvegicus (30)
Arabidopsis thaliana (19)
Danio rerio (11)
Saccharomyces cerevisiae (9)
Zea mays (7)
Burkholderia cenocepacia (7)
Escherichia coli (6)
Bos taurus (5)
Caenorhabditis elegans (5)
Oryza sativa (4)
Solanum tuberosum (4)
Glycine max (4)
Actinoplanes sp. SE50/110 (4)
Gallus gallus (4)
Sus scrofa (4)
Felis catus (3)
Bacillus subtilis (3)
Plasmodium falciparum (3)
Miscanthus sinensis (2)
groundwater metagenome (2)
Moniezia expansa (2)
Euphorbia esula (2)
Bacillus subtilis subsp. subtilis str. 168 (2)
Haemophilus influenzae (2)
Macaca mulatta (2)
Oryza sativa Indica Group (2)
Macaca fascicularis (2)

Organisms

Homo sapiens (2)
Mus musculus (1)

Repository

biostudies-arrayexpress (702)
pride (36)
MetaboLights (17)
ENA (3)
EGA (1)
MassIVE (1)

Tissue

Cell culture (13)
Brain (5)
Epithelial cell (5)
Permanent cell line cell (4)
Whole body (3)
Blood plasma (2)
Blood serum (2)
Anther (1)
Blood (1)
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Bone marrow (1)
Embryonic stem cell (1)
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Hepatocyte (1)
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Leaf (1)
Macrophage (1)
Microglial cell activation (1)
Testis (1)

Disease

Breast cancer (4)
Severe acute respiratory syndrome (2)
Glioblastoma (2)
Burn injury (1)
Normal renal cortex (1)
Post-stasis (1)
Breast adenocarcinoma (1)
Control (1)
Cancer (1)
Melanoma (1)
Osteosarcoma (1)
Normal (1)
Disease free (1)
Malignant neoplasm of ovary (1)
Neuroblastoma (1)
Retinal degeneration (1)
Stroke (1)

Technology Type

Mass Spectrometry (36)
Shotgun proteomics (18)
Mass spectrometry (14)
SRM/MRM (5)
Bottom-up proteomics (4)
Data-dependent acquisition (4)
RNA mass spectrometry (4)
SWATH MS (4)
Mass spectrometry assay (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Gel-based experiment (3)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 4000 (16)
Illumina HiSeq 2500 (11)
Illumina NovaSeq 6000 (10)
Illumina MiSeq (7)
NextSeq 500 (7)
Illumina HiSeq 2000 (3)
Bio-Rad CFX96 Real-time System (2)
BD LSRFortessa (2)
Illumina Genome Analyzer II (2)
NextSeq 2000 (2)
Ion Torrent S5 XL (2)
Chromium X instrument (10x Genomics); GEM-X FX Chips (10x Genomics); Agilent TapeStation D1000; qPCR (library quantification kit for Illumina platforms) (1)
Chromium X instrument (10x Genomics); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781); Human Gene Expression Probe Set v1.0.1 (10x Genomics) (1)
Countess 3 FL Automated Cell Counter (Thermo Fisher Scientific; AMQAF2000); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781) (1)
Advanced Sequencing Facility (1)
Epidermal cells : Trypsin dissociation / Dermal cells :MACS Whole Skin Dissociation Kit (1)
Illumina NovaSeq 6000 sequencing platform (Illumina) (1)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds. (1)
Chromium Controller (10X Genomics) (1)
See manuscript (1)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (1)
Lab Chip GX touch HT (Perkin Elmer) (1)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (1)
Chromium Controller (1)
MACS Whole Skin Dissociation Kit (1)
G2565BA DNA microarray scanner [Agilent Technologies] (1)
None (1)
Sequel (1)
Ion Torrent S5 (1)
2100 Bioanalyzer (Agilent, CA, USA), Qubit 2.0 (Invitrogen, Germany) (1)

Publication Date

2010 (102)
2013 (95)
2012 (95)
2011 (72)
2014 (69)
2016 (57)
2015 (52)
2008 (30)
2009 (23)
2019 (20)
2022 (19)
2018 (19)
2023 (15)
2021 (15)
2026 (14)
2020 (13)
2025 (11)
2024 (11)
2007 (11)
2017 (8)
2004 (3)
2006 (2)

CHEBI ID

CHEBI:15428 (5)
CHEBI:17497 (5)
CHEBI:18257 (5)
CHEBI:20067 (5)
CHEBI:30769 (5)
CHEBI:30805 (5)
CHEBI:15741 (4)
CHEBI:15843 (4)
CHEBI:15940 (4)
CHEBI:16199 (4)
CHEBI:16335 (4)
CHEBI:16414 (4)
CHEBI:16467 (4)
CHEBI:16704 (4)
CHEBI:16737 (4)
CHEBI:16750 (4)
CHEBI:16811 (4)
CHEBI:16828 (4)
CHEBI:16865 (4)
CHEBI:16919 (4)
CHEBI:16977 (4)
CHEBI:17154 (4)
CHEBI:17203 (4)
CHEBI:17509 (4)
CHEBI:17568 (4)
CHEBI:17822 (4)
CHEBI:17859 (4)
CHEBI:17895 (4)
CHEBI:18012 (4)
CHEBI:25094 (4)

Metabolite Name

Adenosine (4)
Betaine (4)
Creatine (4)
Creatinine (4)
Glycerophosphocholine (4)
Glycine (4)
Guanosine (4)
Hypoxanthine (4)
L-Tryptophan (4)
L-Tyrosine (4)
L-Valine (4)
Nicotinamide (4)
Ornithine (4)
2-Phenylglycine (3)
Cholesterol (3)
Choline (3)
Citric acid (3)
Cytosine (3)
Glutaric acid (3)
Glycerol (3)
Glycolic acid (3)
L-Arginine (3)
L-Carnitine (3)
L-Histidine (3)
L-Leucine (3)
L-Lysine (3)
L-Proline (3)
Lysine (3)
Malic acid (3)
Methionine (3)

First Public Date

2020 (1)
2017 (1)
2013 (1)

Study type

Transcription profiling by array (304)
ChIP-seq (130)
RNA-seq of coding RNA (77)
ChIP-chip by tiling array (47)
Comparative genomic hybridization by array (23)
Methylation profiling by array (23)
ChIP-chip by array (17)
Other (12)
RNA-seq of coding RNA from single cells (11)
Methylation profiling by high throughput sequencing (9)
RNA-seq of non coding RNA (9)
Transcription profiling by tiling array (6)
Genotyping by array (6)
Unknown experiment type (4)
DNA-seq (4)
Cell line - High-throughput sequencing (3)
MicroRNA profiling by high throughput sequencing (3)
Human - One-color microarray (2)
RNA-seq of total RNA (2)
Baseline (1)
Animal - One-color microarray (1)
Human - Methylation microarray (1)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
RIP-seq (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)

Release Date

2025 (143)
2023 (130)
2024 (117)
2022 (117)
2013 (114)
2012 (111)
2021 (109)
2010 (107)
2014 (100)
2015 (96)
2016 (91)
2011 (85)
2020 (67)
2019 (66)
2018 (65)
2017 (39)
2008 (34)
2009 (28)
2026 (20)
2007 (13)
2004 (5)
2006 (2)
1999 (1)

Lab affiliation

Underwood-Prescott Professor, Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, 56-731 Cambridge, MA 02139-4307 (4)
Department of Translational Research in Psychiatry Max Planck Institute of Psychiatry, Munich (2)
Duke University (2)
Shandong Academy of Agricultural Sciences, Jinan, Shandong, China (2)
1Department of Chemistry, Georgia State University, Atlanta, GA (1)
Cancer Stem Cell and Translation Medicine Lab, Innovative Cancer Drug Research and Development Engineering Center of Liaoning Province, Department of Oncology, Shengjing Hospital of China Medical University, Shenyang, 110004, China (1)
Department of Andrology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510080, China (1)
Department of Applied Chemistry, Chaoyang University of Technology, 168 Jifong East Road, Wufong, Taichung 41349, Taiwan (1)
Department of Chemistry and Chemical Biology, Barnett Institute of Chemical & Biological Analysis, Northeastern University, Boston, MA, United States (1)
Department of Horticulture, Zijingang Campus, Zhejiang University, China (1)
Department of Immunobiology, University of Lausanne, Switzerland (1)
Department of Neurology,Neurosciences Centre,All India Institute of Medical Sciences,Ansari Nagar, New Delhi-110029, India (1)
Department of Pharmacology Cancer Biology Institute Yale University School of Medicine (1)
Duke University Dept of Biochemistry (1)
Département de Neurochirurgie, CHU Angers, Angers, France Inserm UMR 1307, CNRS UMR 6075, Université de Nantes, CRCI2NA, Université d'Angers, Angers, France (1)
Epithelial Systems Biology Laboratory, National Heart, Lung, and Blood Institute, NIH, Bethesda, MD, USA (1)
Head of Laboratory of Neuro-Oncology Clinical & Cancer Proteomics the Netherlands (1)
Institute of Computing Technology, CAS (1)
Institute of Molecular and Cellular Biology, National Taiwan University (1)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
Max Planck Institute of Psychiatry Department of Translational Research in Psychiatry (1)
Micalis Institute AgroParisTech INRA 78350 Jouy-en-Josas (1)
National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, China (1)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen (Denmark) (1)
Proteomics and Biomarkers, Department of Translational Research in Psychiatry, Max Planck Institute of Psychiatry, Munich (1)
School of Medicine, College of Medicine, Fu Jen Catholic University, New Taipei, Taiwan (1)
School of Optometry, The Hong Kong Polytechnic University, Hong Kong (1)
Sun Yat-Sen University (1)
The Hong Kong Polytechnic University (1)
The University of Hong Kong, Department of Chemistry, Chemical Biology Centre and State Key Laboratory of Synthetic Chemistry (1)

Tags

xref:PubMed:17109755 (1)
xref:PubMed:17822919 (1)
xref:PubMed:32611366 (1)

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Differential gene expression profiling of MIHA cells transfected with C-terminal truncated HBx mutants

To compare the differentially expressed transcriptomes between MIHA cells transfected with empty vector control or different C-terminal truncated HBx mutants (14 or 35 amino acid carboxyl-terminal truncation - i.e. d14 and d35) mRNA profiles of MIHA cells stably overexpressing empty vector control o...

ORGANISM(S): Homo sapiens

2016-08-02 | E-GEOD-71993 | biostudies-arrayexpress

A randomized trial of tai chi for fibromyalgia.

Not available

S-EPMC3023168 | biostudies-literature

Effects of Tai Chi versus Physical Therapy on Mindfulness in Knee Osteoarthritis.

Not available

S-EPMC5612617 | biostudies-literature

Novel targets for the transcription factors MEF2 in MA-10 Leydig cells

Testosterone production by Leydig cells is a tightly regulated process requiring synchronized expression of several steroidogenic genes by numerous transcription factors. Myocyte enhancer factor 2 (MEF2) is a transcription factor recently identified in somatic cells of the male gonad. In other tissu...

ORGANISM(S): Mus musculus

2015-04-12 | E-GEOD-64128 | biostudies-arrayexpress

Tai Chi is effective in treating knee osteoarthritis: a randomized controlled trial.

Not available

S-EPMC3023169 | biostudies-literature

The positioning of Chi sites allows the RecBCD pathway to suppress some genomic rearrangements.

Not available

S-EPMC6393298 | biostudies-literature

Effect of tai chi versus aerobic exercise for fibromyalgia: comparative effectiveness randomized controlled trial.

Not available

S-EPMC5861462 | biostudies-literature

Tai Chi for treating knee osteoarthritis: designing a long-term follow up randomized controlled trial.

Not available

S-EPMC2529300 | biostudies-literature

Transcriptomic analysis of grape (Vitis vinifera L.) leaves exposed to ultraviolet C radiation

Solar ultraviolet C（UV-C）radiation reaching the Earth’s surface is little due to the filtering effects of the stratospheric ozone layer. At present, artificial UV-C irradiation is utilized for different biological processes. Grape is a major fruit crop around the world. Research has shown that UV-C ...

ORGANISM(S): Vitis vinifera

2014-11-15 | E-GEOD-62315 | biostudies-arrayexpress

RNA Affymetrix microarray analysis of colonic mucosal layer of Apc Min/+ mice fed or not with maslinic acid.

This experiment reports the RNA microarray data from the microarray analysis performed to the RNA isolated from colonic mucosal layer of Apc Min/+ mice. Apc Min/+ mice develop polyps in both the small and large intestine, with a greater incidence of intestinal adenomas observed in the former. We wan...

ORGANISM(S): Mus musculus

2015-10-31 | E-MTAB-4007 | biostudies-arrayexpress

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