Ma Jie J - OmicsDI

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Unknown (97)
Proteomics (69)
Transcriptomics (12)
Metabolomics (10)

Organisms

Homo sapiens (45)
Schizophyllum commune H4-8 (17)
Mycobacterium tuberculosis SP7 (17)
Mycobacterium tuberculosis SP10 (17)
Mycobacterium tuberculosis SP13 (17)
Mycobacterium tuberculosis SP22 (17)
Chlamydomonas reinhardtii (17)
Enterococcus mundtii CRL35 (17)
Oncorhynchus tshawytscha (17)
Pseudomonas canadensis (17)
Influenza A virus (A/California/04/2009(H1N1)) (17)
Pseudomonas aeruginosa PAO1H2O (17)
Human alphaherpesvirus 1 strain 17 (17)
Mycobacterium tuberculosis SP1 (17)
Marchantia polymorpha subsp. ruderalis (17)
Methylocystis sp. (17)
Exiguobacterium sp. SH31 (17)
Palaemonetes sp. common grass shrimp associated circular virus (17)
Amaranthus tricolor (17)
Spirochaeta sp. ELBA (17)
Clavibacter nebraskensis NCPPB 2581 (17)
Porites pukoensis (17)
Porphyromonas gingivalis (17)
Mus musculus (10)
Drosophila melanogaster (2)
Grapholita molesta (2)
Oryza sativa (1)
Bacillus altitudinis (1)
Sus scrofa (1)
Saccharomyces cerevisiae (1)

Repository

iProX (46)
pride (17)
biostudies-arrayexpress (12)
MetaboLights (10)
PeptideAtlas (3)
jPOST (2)
MassIVE (1)

Tissue

Cell culture (6)
Others (3)
Embryonic stem cell (2)
Epithelial cell (2)
Liver (2)
Plant cell (1)
Blood plasma (1)
Whole body (1)
Leaf (1)
Lung (1)

Disease

Wounds and Injuries (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (17)
Mass spectrometry (9)
Shotgun proteomics (8)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Bottom-up proteomics (2)
Mass spectrometry assay (1)
Mass spectrometry imaging (1)
SWATH MS (1)
SRM/MRM (1)
Top-down proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (2)
LTQ Orbitrap Elite (2)
Illumina HiSeq 2000 (1)
LTQ Orbitrap (1)
Liquid Chromatography MS - Negative (LC-MS (Neg)) (1)
Liquid Chromatography MS - Positive (LC-MS (Pos)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
5975C Series GC/MSD (Agilent) (1)
Xevo G2 QTOF (Waters) (1)
Xevo QTof MS (Waters) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse-phase (1)
QExactive (1)

Publication Date

2020 (12)
2022 (11)
2025 (10)
2024 (10)
2017 (7)
2023 (6)
2021 (6)
2018 (5)
2014 (5)
2013 (4)
2026 (4)
2015 (3)
2012 (3)
2019 (3)

UNIPROT ID/AC

Q99619 (3)
Q6ZVE7 (3)
Q9H3J6 (3)
Q76EJ3 (3)
Q07973 (3)
Q9Y576 (3)
O75771 (3)
O75751 (3)
Q9UBZ4 (3)
Q9BZD2 (3)
Q96QP1 (3)
Q8TDW5 (3)
Q6ZTQ3 (3)
Q6MZQ0 (3)
P12757 (3)
Q9BVX2 (3)
Q9NW61 (3)
Q9NXZ2 (3)
Q9H633 (3)
Q86XH1 (3)
Q9UHA2 (3)
Q9H668 (3)
Q63HM1 (3)
Q5D0E6 (3)
Q7Z5U6 (3)
Q53S58 (3)
Q9NS25 (3)
Q8WVD5 (3)
Q8N4U5 (3)
Q5BKU9 (3)

ENSEMBL ID

ENSG00000247315 (3)
ENSG00000147251 (3)
ENSG00000170477 (3)

CHEBI ID

CHEBI:46961 (3)
CHEBI:38299 (3)
CHEBI:7916 (3)
CHEBI:30769 (3)
CHEBI:16566 (3)
CHEBI:80743 (2)
CHEBI:82440 (2)
CHEBI:21826 (2)
CHEBI:5842 (2)
CHEBI:82557 (2)
CHEBI:27776 (2)
CHEBI:48522 (2)
CHEBI:3232 (2)
CHEBI:7448 (2)
CHEBI:80148 (2)
CHEBI:7516 (2)
CHEBI:43778 (2)
CHEBI:1018 (2)
CHEBI:79947 (2)
CHEBI:34869 (2)
CHEBI:38689 (2)
CHEBI:3455 (2)
CHEBI:2968 (2)
CHEBI:4472 (2)
CHEBI:44576 (2)
CHEBI:133926 (2)
CHEBI:60579 (2)
CHEBI:81833 (2)
CHEBI:1188 (2)
CHEBI:9632 (2)

Metabolite Name

Sodium cloxacillin monohydrate (2)
Difenacoum (2)
13H-Dibenzo[a,g]fluorene (2)
Hodgkinsine (2)
Gamma-L-Glutamyl-butirosin B (2)
N3'-Acetylgentamicin (2)
Hypoxylone (2)
Treosulfan (2)
Geissospermine (2)
2-Methyl-1-hydroxypropyl-ThPP (2)
Nafcillin sodium (2)
Neostigmine methylsulfate (2)
3-(3'-Methylthio)propylmalic acid (2)
Phosphophosphinate (2)
2-Aminoethylarsonate (2)
3-Epimacronine (2)
Ornaline (2)
Longifolonine (2)
Butamifos (2)
Trans-1,2-Diphenylcyclobutane (2)
Lasonolide A (2)
Blestriarene B (2)
6-Benzylaminopurine (2)
Indole-3-ethanol (2)
L-Tyrosine methyl ester 4-sulfate (2)
Polidocanol (2)
6-Thioguanosine monophosphate (2)
Lamioside (2)
12-trans-Hydroxy juvenile hormone III (2)
3-Methyloxindole (2)

Study type

Transcription profiling by array (7)
RNA-seq of coding RNA (3)
Other (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (20)
2022 (15)
2024 (12)
2023 (12)
2021 (8)
2013 (6)
2020 (6)
2018 (6)
2015 (5)
2019 (5)
2017 (4)
2016 (4)
2012 (3)
2026 (3)

Lab affiliation

Institute For Systems Biology (2)
Department of Clinical Pharmacy, University of Michigan (1)
Institute for Systems Biology, Seattle, WA, USA. (1)
The second affiliated Hospital, Guangzhou Medical University (1)
Department of Chemistry, Washington University in St. Louis (1)
CAMS Key Laboratory of Translational Research on Lung Cancer, State Key Laboratory of Molecular Oncology, Department of Medical Oncology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College (1)
The First Affiliated Hospital, School of Medicine, Zhejiang University (1)
Department of Ophthalmology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, 1095 Jie-fang Road, Wuhan, Hubei Province, China (1)
Shanghai Jiao Tong University School of Medicine (1)
State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, the First Affiliated Hospital, School of Medicine, Zhejiang University, 310003 Hangzhou, China (1)
Department of Clinical Pharmacy, University of Michigan College of Pharmacy (1)
Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation, China (1)
Ningxia Medical University (1)
Institute of Fruit Tree Research. Guangdong Academy of Agricultural Sciences. Tianhe District, Guangzhou 510640, Guangdong Province, China (1)
Institute for Systems Biology (1)
Northwest University (1)

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Genome-wide association study identifying immune markers in Qingyuan partridge chickens infected with avian Leukosis virus subgroup J.

Not available

S-EPMC12409427 | biostudies-literature

Chemomics-Integrated Proteomics Analysis of Jie-Geng-Tang to Ameliorate Lipopolysaccharide-Induced Acute Lung Injury in Mice.

Not available

S-EPMC4992511 | biostudies-literature

Deciphering the Effects and Mechanisms of Yi-Fei-San-Jie-pill on Non-Small Cell Lung Cancer With Integrating Network Target Analysis and Experimental Validation.

Not available

S-EPMC9130494 | biostudies-literature

Effects of Jie Yu Wan on Generalized Anxiety Disorder: A Randomized Clinical Trial.

Not available

S-EPMC9012658 | biostudies-literature

Single-cell RNA sequencing reveals Shen-Bai-Jie-Du decoction retards colorectal tumorigenesis by regulating the TMEM131-TNF signaling pathway-mediated differentiation of immunosuppressive dendritic cells.

Not available

S-EPMC12278398 | biostudies-literature

Real-World Study on Chai-Shi-Jie-Du Granules for the Treatment of Dengue Fever and the Possible Mechanisms Based on Network Pharmacology.

Not available

S-EPMC10482559 | biostudies-literature

Huang-Lian-Jie-Du Decoction Attenuates Atherosclerosis and Increases Plaque Stability in High-Fat Diet-Induced ApoE^-/- Mice by Inhibiting M1 Macrophage Polarization and Promoting M2 Macrophage Polarization.

Not available

S-EPMC8445160 | biostudies-literature

Cortical morphological alterations in methamphetamine-induced psychosis: a surface-based morphometry study.

Not available

S-EPMC12752173 | biostudies-literature

Different miRNA expression profiles of CRC with or without lymph node metastasis

Identifying the exact molecules associated with CRC metastasis may be crucial to understand the process, which might also be translated to the diagnosis and treatment of CRC. In this study, we investigate the association of microRNA expression patterns with the lymph node metastasis of colorectal ca...

ORGANISM(S): Homo sapiens

2013-12-31 | E-GEOD-48074 | biostudies-arrayexpress

Metabolic Reprogramming in Tumor-Associated Macrophages during Murine Hepatocellular Carcinoma Progression

To investigate the impact of Wdr4 on the metabolic reprogramming of tumor-associated macrophages (TAMs) in hepatocellular carcinoma (HCC), we established an orthotopic HCC model in Wdr4-f/f and Wdr4 conditional knockout (Wdr4-cKO) mice. TAMs were subsequently isolated via flow cytometry-based cel...

2025-09-28 | MTBLS12764 | MetaboLights

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188 Results

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