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TranscriptomicsRice Transcriptome - Slide A; Slide B
[Oryza sativa Genome Oligo Set Version 1.0 was designed by Beijing Genomics Institute (BGI) and contain 60,727 70mer oligos representing both indica and japonica genomes. All oligos were designed from cDNAs, expreseed sequence tag (EST) sequences, predicted genes of BGI rice genome build and other p...
ORGANISM(S): Oryza sativa (indica cultivar-group) 
2010-06-10 | E-GEOD-2691 | biostudies-arrayexpress
TranscriptomicsArabidopsis Transcriptome
Sample groupings for this project are as follows: Cauline leaf vs Cultured Cell : - Cauline leaf, p1; Exp:Red; Ref: Green (Cy5:Cy3) - Cauline leaf, p2; Exp:Red; Ref: Green (Cy5:Cy3) - Cauline leaf, p3; Exp:Red; Ref: Green (Cy5:Cy3) Cotyledon light vs Cotyledon dark : - Cotyledon, CP1; Exp:Red; Ref...
ORGANISM(S): Arabidopsis thaliana 
2004-10-24 | E-GEOD-1599 | biostudies-arrayexpress
TranscriptomicsSKIP Is a Component of the Spliceosome Linking Alternative Splicing and the Circadian Clock in Arabidopsis
Circadian clocks generate endogenous rhythms in most organisms from cyanobacteria to humans and facilitate entrainment to environmental diurnal cycles, thus conferring a fitness advantage. Both transcriptional and posttranslational mechanisms are prominent in the basic network architecture of circad...
ORGANISM(S): Arabidopsis thaliana 
2012-12-13 | E-GEOD-32216 | biostudies-arrayexpress
TranscriptomicsComparison analysis of rice and Arabidopsis photomorphogenesis
Long oligonucleotide microarrays were used for the study of expression profile changes during seedling photomorphogenesis in rice and in Arabidopsis. Different light quality treatments were applied to seedlings. To dissect organ-specific light effects, we further profiled shoot and root organs in bo...
ORGANISM(S): Arabidopsis thaliana 
2010-06-10 | E-GEOD-2360 | biostudies-arrayexpress
ProteomicsGlobal analysis of lysine 2-hydroxyisobutyrylation in wheat leaf
Lysine 2-hydroxyisobutyrylation (Khib) is a novel naturally occurring PTM, which is firstly discovered in histone. The system Khib detection at proteomics level has been performed in various species and tissues for the function and role characterization of Khib in biological activities. However, the...
ORGANISM(S): Triticum aestivum (Wheat) 
2021-06-10 | PXD020790 | Pride
2-hydroxyisobutyrylation Wheat 
TranscriptomicsIBM1, a JmjC domain histone demethylase, is involved in the regulation of RNA-directed DNA methylation through epigenetic control of RDR2 and DCL3 expression in Arabidopsis.
The small RNA mediated DNA methylation (RdDM) is highly elaborated in Arabidopsis as an important epigenetic pathway controls expression of genes and multiple developmental processes. RDR2 and DCL3 are necessary factors to the 24-nt siRNA biogenesis and the RdDM pathway. Here, we find that IBM1 (inc...
ORGANISM(S): Arabidopsis thaliana 
2012-08-03 | E-GEOD-32284 | biostudies-arrayexpress
TranscriptomicsSKIP Confers Salt Tolerance through Controlling Gene Alternative Splicing in Arabidopsis
A better understanding of the mechanisms for plant in response to abiotic stresses is key for the improvement of plant to resistant to the stresses. Much has been known for the regulation of gene expression in response to salt stress at transcriptional level, however, little is known at posttranscri...
ORGANISM(S): Arabidopsis thaliana 
2015-04-01 | E-GEOD-55632 | biostudies-arrayexpress
TranscriptomicsA transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies
Whole-genome transcriptional profiles of rice cell types, isolated by laser-capture microdissection. The first comprehensive multi-organ cell type transcriptome atlas from a plant, with 40 distinct cell types from several developmental stages of seeds, shoots and roots, reveals cell-specific promote...
ORGANISM(S): Oryza sativa 
2010-05-19 | E-GEOD-13161 | biostudies-arrayexpress
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