Ma Tao T - OmicsDI

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Unknown (704)
Proteomics (89)
Transcriptomics (21)
Metabolomics (20)
Genomics (5)
Multiomics (3)

Organisms

Andropogon gerardi (34)
Bacteria (34)
Bartonella quintana JK 31 (34)
Canis lupus familiaris (34)
Clavibacter nebraskensis NCPPB 2581 (34)
Cnidaria (34)
Ensifer adhaerens (34)
Human alphaherpesvirus 1 strain 17 (34)
Human alphaherpesvirus 1 strain KOS (34)
Human betaherpesvirus 5 (34)
Human herpesvirus 2 strain 186 (34)
Mesocricetus auratus (34)
Miscanthus x giganteus (34)
Mus musculus (34)
Panicum virgatum (34)
Platyhelminthes (34)
Pseudomonas aeruginosa PA103 (34)
Rabies virus Nishigahara RCEH (34)
Homo sapiens (33)
Mus musculus (22)
Escherichia coli (5)
Xenopus laevis (2)
Arabidopsis thaliana (2)
Zea mays (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Oryza sativa (1)
Ailuropoda melanoleuca (1)
Chlorocebus sabaeus (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Vibrio cholerae O1 biovar El Tor str. N16961 (1)

Repository

iProX (38)
pride (34)
biostudies-arrayexpress (26)
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MassIVE (10)
PeptideAtlas (5)
jPOST (2)

Tissue

Cell culture (10)
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Disease

Parasitic helminthiasis infectious disease (4)
Breast cancer (3)
Parasitic infectious disease (2)
High Grade Ovarian Serous Adenocarcinoma (1)
Acute leukemia (1)
Alzheimer's disease (1)
Haemonchiasis (1)
Scabies (1)
Severe acute respiratory syndrome (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (34)
Shotgun proteomics (20)
Mass spectrometry (17)
Top-down proteomics (6)
SWATH MS (3)
NMR spectroscopy (2)
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Bottom-up proteomics (2)
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Mass spectrometry assay (1)
MSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (10)
Liquid Chromatography MS - negative - reverse phase (8)
Q Exactive (4)
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Liquid Chromatography MS - positive - hilic (3)
Illumina NovaSeq 6000 (2)
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Illumina HiSeq 2000 (1)
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Impact II HD Q-TOF (1)
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Flow injection analysis MS - positive (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Bruker (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) - (1)
QExactive (1)

Publication Date

2022 (23)
2021 (17)
2025 (14)
2024 (11)
2020 (9)
2014 (8)
2019 (8)
2017 (7)
2015 (7)
2023 (7)
2026 (5)
2012 (4)
2011 (4)
2013 (3)
2010 (3)
2018 (3)
2016 (2)

UNIPROT ID/AC

A0A024R563 (5)
A0A024R8H9 (5)
A0A024RAN2 (5)
A0A024RC46 (5)
A0A087WWK8 (5)
A0A087WZE9 (5)
A0A0A0MR66 (5)
A0A0A0MS51 (5)
A0A0A0MSA7 (5)
A0A0C4DG89 (5)
A0A0C4DGT3 (5)
A0AVT1 (5)
A0FGR8 (5)
A0FGR8-2 (5)
A0FGR8-6 (5)
A0JLT2 (5)
A0JNW5 (5)
A0MZ66 (5)
A1L170 (5)
A1L390 (5)
A1X283 (5)
A2BFH1 (5)
A2RRP1 (5)
A3KN83 (5)
A5A3E0 (5)
A5YKK6 (5)
A5YM69 (5)
A6NHL2 (5)
A6NL93 (5)
A6NNZ2 (5)

ENSEMBL ID

ENSG00000147251 (5)
ENSG00000247315 (5)
ENSG00000170477 (4)
ENSG00000204131 (2)
ENSG00000229353 (2)

CHEBI ID

CHEBI:16704 (7)
CHEBI:15891 (7)
CHEBI:18132 (6)
CHEBI:16335 (6)
CHEBI:16919 (6)
CHEBI:27897 (6)
CHEBI:17895 (6)
CHEBI:17295 (6)
CHEBI:17368 (6)
CHEBI:28997 (5)
CHEBI:22652 (5)
CHEBI:16708 (5)
CHEBI:143245 (5)
CHEBI:21557 (5)
CHEBI:27226 (5)
CHEBI:6650 (5)
CHEBI:4676 (5)
CHEBI:15971 (5)
CHEBI:15355 (5)
CHEBI:15843 (5)
CHEBI:15318 (5)
CHEBI:17568 (5)
CHEBI:7916 (5)
CHEBI:16015 (5)
CHEBI:16235 (5)
CHEBI:16450 (5)
CHEBI:30915 (5)
CHEBI:15940 (5)
CHEBI:16027 (5)
CHEBI:17191 (5)

Metabolite Name

Choline (7)
Acetylcholine (6)
Taurine (6)
Adenosine (6)
Creatine (6)
Hypoxanthine (6)
Glycine (5)
Uracil (5)
Phosphocholine (5)
Leucylproline (5)
Guanine (5)
Cytosine (5)
Glutamine (5)
Adenine (5)
Inosine (5)
Hypotaurine (4)
Leucine (4)
Cuminaldehyde (4)
Valine (4)
Betaine (4)
Thiamine (4)
Pyridoxine (4)
Pyridoxamine (4)
L-Histidine (4)
Indole (4)
Pantothenic acid (4)
Tyramine (4)
Asparagine (4)
Spermidine (4)
N-Acetylputrescine (4)

Study type

RNA-seq of coding RNA (10)
Transcription profiling by array (8)
ChIP-seq (4)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (113)
2024 (102)
2023 (81)
2022 (81)
2021 (73)
2020 (55)
2019 (45)
2018 (43)
2017 (29)
2015 (27)
2016 (23)
2013 (16)
2026 (12)
2012 (11)
2014 (8)
2011 (7)
2010 (4)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (2)
Department of Veterinary Biosciences, Melbourne Veterinary School, The University of Melbourne, Parkville, Victoria 3010, Australia (2)
Melbourne Veterinary School, Faculty of Science, The University of Melbourne, Parkville, Victoria, Australia (2)
1 Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui, 230001, China. 2 Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. 3 Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
1Seer, Inc., Redwood City, CA 94065, USA; 4Center for Nanomedicine and Department of Anesthesiology, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115, USA (1)
Baylor College of Medicine (1)
College of Animal Science and Technology, Key Laboratory of Animal Nutrition and Feed Science of Jilin Province, Key Laboratory of Animal Production Product Quality and Security Ministry of Education, Jilin Agricultural University, China (1)
College of Horticulture, Nanjing Agricultural University, China (1)
Department of Biochemistry, Purdue University, West Lafayette, IN USA (1)
Department of Biomedical Sciences, College of Medicine, Chang Gung University, Tao-Yuan Taiwan (1)
Department of Chemistry, University of California, Riverside, CA92521-0403, USA. (1)
Department of Endocrinology and Metabolism, The First Affiliated Hospital of Nanjing Medical University. (1)
Department of General Surgery, Key Laboratory of Hepatosplenic Surgery, Ministry of Education, The First Affiliated Hospital of Harbin Medical University, Harbin 150001, China. Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
Department of Hepatobiliary Surgery, Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, China. (1)
Department of Veterinary Biosciences, Melbourne Veterinary School, The University of Melbourne, Australia (1)
Department of Veterinary Biosciences, The University of Melbourne (1)
Department of biochemistry, Purdue University (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Australia (1)
Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, Australia (1)
Guanghua school of stomatolgy, Hospital of stomatology, Sun Yat-sen university (1)
Key Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (1)
National Institutes of Health (NIH) National Center for Advancing Translational Sciences (NCATS) Division of Pre-clinical Innovation (DPI) (1)
Pacific Northwest National Laboratory (1)
Seer, Inc., Redwood City, CA 94065, USA (1)
Shanghai Center for Plant Stress Biology, CAS Center of Excellence in Molecular Plant Sciences, Chinese Academy of Sciences (1)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (1)
Technical University of Munich, School of Medicine, Institute of Virology, 81675 Munich, Germany (1)
University of Science and Technology of China (1)
Zhejiang University,China (1)

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Extracellular-acidosis restricts one-carbon metabolism and preserves T cell stemness

The accumulation of acidic metabolic waste products within the tumor microenvironment profoundly inhibits effector functions of tumor-infiltrating lymphocytes (TILs). However, it is unclear whether extracellular-acidosis impacts T cell metabolic fitness and differentiation status. Here, we surprisin...

2023-01-17 | MTBLS6661 | MetaboLights

Data processing, multi-omic pathway mapping, and metabolite activity analysis using XCMS Online

Systems biology is the study of complex living organisms, and as such, analysis on a systems-wide scale involves the collection of information-dense data sets that are representative of an entire phenotype. To uncover dynamic biological mechanisms, bioinformatics tools have become essential to fa...

2017-11-23 | MTBLS572 | MetaboLights

Proteomics insights into the molecular mechanisms of c9, t11-CLA synthesis

Cis-9, trans-11-conjugated linoleic acid (c9, t11-CLA), a functional fatty acid, is one of the research hotspots in the fields of functional dairy products development because of its multiple beneficial effects in humans and animals. In milk, most c9, t11-CLA is de novo synthesized from trans-11-oct...

ORGANISM(S): Bos taurus (Bovine)

2022-08-12 | PXD028620 | Pride

Expression data from human lymphoma endothelium and reactive lymph node-derived endothelium

Angiogenesis plays a key role in tumor metastasis. Many genes may act in this process including formation of vessels, immune evasion,etc. Different gene expression profiles between lymphoma endothelium cells and reactive lymph node-derived endothelium cells may uncover these genes. And intensive mec...

ORGANISM(S): Homo sapiens

2010-01-14 | E-GEOD-19882 | biostudies-arrayexpress

From single-site tantalum complexes to nanoparticles of Ta _x N _y and TaO _x N _y supported on silica: elucidation of synthesis chemistry by dynamic nuclear polarization surface enhanced NMR spectroscopy and X-ray absorption spectroscopy.

Not available

S-EPMC5621011 | biostudies-literature

SADI-S and SG Surgeries Induce Distinct Bile Acid Profiles Linked to Improved Glucose Metabolism via Microbiota Interactions_serum

Introduction:

Bariatric surgery profoundly improves type 2 diabetes (T2D); however, the specific mechanisms linking distinct procedures to metabolic benefits through bile acid (BA) remodeling remain incompletely understood. This study investigates the differential effects of single-anastomo...

2025-09-16 | MTBLS12716 | MetaboLights

SADI-S and SG Surgeries Induce Distinct Bile Acid Profiles Linked to Improved Glucose Metabolism via Microbiota Interactions_feces

Introduction:

2025-09-16 | MTBLS12715 | MetaboLights

Salivary Protein Biomarker Detection of Saliva Secretion Disorder in a Primary Sjögren Syndrome Murine Model

Decreased salivary flow is one of the most common symptoms in primary Sjögren syndrome (pSS). The present study was designed to identify a salivary protein biomarker related to saliva secretion disorder in NOD/ShiLtJ mice, a pSS primary murine model. The stimulated saliva was collected from NOD/ShiL...

ORGANISM(S): Mus musculus (Mouse)

2018-03-21 | PXD008199 | Pride

Biomarker saliva secretion disorder sjögren syndrome saliva differential proteomic analysis

A Comprehensive and Ultrasensitive Isotope Calibration Method for Soil Amino Compounds Using Orbitrap Mass Spectrometry

Bound amino compounds (amino acid and amino sugar polymers) comprise a significant proportion (~40%) of soil organic nitrogen and therefore represent an essential source of nitrogen for plant and microbial nutrition. The analysis of their content and isotope enrichment still represents a significant...

2025-06-16 | MTBLS12550 | MetaboLights

Ablative Radiotherapy Doses Lead to a Substantial Prolongation of Survival in Patients With Inoperable Intrahepatic Cholangiocarcinoma: A Retrospective Dose Response Analysis.