Cis-9 - OmicsDI

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Transcriptomics (3097)
Unknown (2264)
Genomics (497)
Metabolomics (366)
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Methylation profiling (2)

Organisms

Homo sapiens (1639)
Mus musculus (889)
Arabidopsis thaliana (173)
Rattus norvegicus (145)
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Vitis vinifera (5)
Aedes aegypti (5)
cellular organisms (2)

Organisms

Homo sapiens (57)
Mus musculus (41)
Arabidopsis thaliana (7)
Rattus norvegicus (5)
Drosophila melanogaster (4)
Danio rerio (4)
Monopterus albus (3)
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Sus scrofa (1)
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Repository

biostudies-arrayexpress (3278)
MetabolomicsWorkbench (192)
ENA (187)
MetaboLights (173)
MassIVE (111)
geo (106)
EGA (42)
jPOST (28)
iProX (18)
pride (8)
PAXDB (4)
Cell Collective (3)
EVA (3)
PeptideAtlas (3)
BioModels (1)
GNPS (1)
GPMDB (1)

Tissue

Blood (80)
Cultured cells (15)
Feces (14)
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Macrophages (9)
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Brain (4)
Plant (4)
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Disease

Normal (9)
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Toxicity (1)
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HPV positive (1)
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Primary effusion lymphoma (PEL) (1)
Burn injury (1)
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Primary medulloblastoma (1)
Asthma (1)
Diffuse large B-cell lymphoma (1)
Hypertension (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Erythroleukemia (1)
Primary tumor (1)
Apparently healthy (1)
Myeloma (1)
"hepatocellular adenoma" (1)
Chronic granulomatous disease (1)
Mesothelioma (1)
Breast adenocarcinoma (1)
IRAK-4 Q293X mutation (1)
Colorectal cancer (1)
Osteosarcoma (1)

Technology Type

Mass Spectrometry (200)
ESI (180)
Mass spectrometry (111)
Mass spectrometry assay (58)
EI (18)
Shotgun proteomics (6)
NMR spectroscopy (4)
Illumina HiSeq 2000 (3)
Unspecified (2)
APCI (2)
Affymetrix Axiom Genome-Wide ASI 1 Array (1)
Aperio (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, ILLUMINA (1)
Other (1)
EI/ESI (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (81)
NextSeq 500 (52)
Illumina HiSeq 2500 (47)
Illumina HiSeq 2000 (46)
Illumina HiSeq 4000 (23)
Illumina NovaSeq X (10)
Scanning hardware (9)
NextSeq 550 (8)
Illumina Genome Analyzer IIx (7)
Agilent 2100 Bioanalyzer (4)
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Other (2)
Bioanalyser (2)
DNA Microarray Scanner BA [Agilent Technologies] (2)
Illumina HiSeq 1000 (2)
Illumina HiSeq 3000 (2)
Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 (1)
TruSeq stranded Total RNA kit (1)
Chromium X instrument (10x Genomics); GEM-X FX Chips (10x Genomics); Agilent TapeStation D1000; qPCR (library quantification kit for Illumina platforms) (1)

Publication Date

2013 (437)
2012 (370)
2015 (348)
2014 (339)
2010 (320)
2011 (313)
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2018 (60)
2019 (56)
2020 (51)
2006 (33)
2005 (21)
2004 (11)
2002 (2)
2027 (1)

UNIPROT ID/AC

P10276 (1)
1433A_TOBAC (1)
1433B_TOBAC (1)
1433C_TOBAC (1)
1433D_TOBAC (1)
1433E_TOBAC (1)
1433F_TOBAC (1)
1433Z_AEDAE (1)
1433_TOBAC (1)
3MGA_BACSU (1)
4CL1_TOBAC (1)
4CL2_TOBAC (1)
4OT_BACSU (1)
53DR_BACSU (1)
6PGDH_BACSU (1)
6PGD_BACSU (1)
6PGL_BACSU (1)
8030.ENSSSAP00000000285 (1)
8030.ENSSSAP00000000573 (1)
8030.ENSSSAP00000000871 (1)
8030.ENSSSAP00000001022 (1)
8030.ENSSSAP00000001240 (1)
8030.ENSSSAP00000001511 (1)
8030.ENSSSAP00000001597 (1)
8030.ENSSSAP00000002059 (1)
8030.ENSSSAP00000002148 (1)
8030.ENSSSAP00000002643 (1)
8030.ENSSSAP00000002671 (1)
8030.ENSSSAP00000002680 (1)
8030.ENSSSAP00000002684 (1)

ENSEMBL ID

ENSG00000170477 (3)
ENSG00000247315 (2)

CHEBI ID

CHEBI:30769 (21)
CHEBI:28044 (18)
CHEBI:16196 (18)
CHEBI:17351 (18)
CHEBI:15741 (17)
CHEBI:30805 (16)
CHEBI:15428 (16)
CHEBI:6650 (16)
CHEBI:17568 (16)
CHEBI:16704 (16)
CHEBI:18012 (16)
CHEBI:16750 (15)
CHEBI:16335 (15)
CHEBI:27897 (15)
CHEBI:15756 (15)
CHEBI:26271 (14)
CHEBI:18186 (14)
CHEBI:28875 (14)
CHEBI:30746 (14)
CHEBI:17596 (14)
CHEBI:17368 (14)
CHEBI:27432 (14)
CHEBI:17533 (13)
CHEBI:16708 (13)
CHEBI:28842 (13)
CHEBI:27266 (13)
CHEBI:7916 (13)
CHEBI:42492 (1)
CHEBI:15367 (1)
CHEBI:16670 (1)

Metabolite Name

Uridine (34)
Inosine (28)
Guanosine (26)
Uracil (25)
Taurine (24)
Adenine (24)
Creatinine (24)
L-Histidine (23)
L-Tryptophan (23)
Creatine (23)
Glycerophosphocholine (23)
L-Phenylalanine (23)
Betaine (22)
Adenosine (22)
Ornithine (21)
Choline (21)
L-Tyrosine (21)
Glutaric acid (20)
Xanthine (20)
Hypoxanthine (20)
Citrulline (19)
L-Proline (19)
L-Arginine (19)
Xanthosine (19)
Linoleic acid (19)
Azelaic acid (19)
L-Valine (19)
L-Methionine (19)
Glycine (18)
Thymine (18)

First Public Date

2014 (40)
2025 (24)
2026 (20)
2023 (18)
2024 (14)
2022 (12)
2019 (12)
2017 (11)
2021 (9)
2020 (9)
2015 (7)
2016 (6)
2013 (4)
2018 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Cambridge University (1)
Centre for Genomic Regulation, CRG (1)
College of Animal Science and Technology, Key Laboratory of Animal Nutrition and Feed Science of Jilin Province, Key Laboratory of Animal Production Product Quality and Security Ministry of Education, Jilin Agricultural University, China (1)
Department of Biochemistry University of Cambridge Cambridge UK (1)
Department of Chemistry, Stanford University Howard Hughes Medical Institute, Stanford University (1)
Institute for Stroke and Dementia Research (ISD), University Hospital, Ludwig-Maximilian-University (LMU), Munich, Germany (1)
MRC Laboratory of Molecular Biology, Cell Biology Division (1)
State Key Laboratory of Quality Research in Chinese Medicine and Institute of Chinese Medical Sciences, University of Macau, Macau 999078 (1)

IsPrivate

False (1)

Classification

bacteria (3)
protozoa (1)

Study type

Transcription profiling by array (2283)
RNA-seq of coding RNA (361)
ChIP-seq (212)
Other (42)
Unknown experiment type (37)
Comparative genomic hybridization by array (35)
RNA-seq of coding RNA from single cells (32)
RNA-seq of non coding RNA (31)
Methylation profiling by array (29)
MicroRNA profiling by array (21)
ChIP-chip by tiling array (20)
ChIP-chip by array (19)
Cell line - High-throughput sequencing (15)
DNA-seq (13)
Methylation profiling by high throughput sequencing (13)
Transcription profiling by tiling array (11)
Transcription profiling by RT-PCR (11)
RNA-seq of total RNA (11)
ATAC-seq (8)
RNAi profiling by array (7)
Cell line - One-color microarray (5)
Spatial transcriptomics by high-throughput sequencing (5)
Hi-C (5)
Animal - One-color microarray (4)
Human - High-throughput sequencing (4)
Genotyping by array (4)
Proteomic profiling by array (4)
Transcription profiling by SAGE (3)
High-throughput sequencing (3)
MicroRNA profiling by high throughput sequencing (3)

Release Date

2013 (475)
2012 (424)
2015 (410)
2014 (390)
2010 (368)
2011 (351)
2016 (336)
2022 (312)
2025 (294)
2008 (282)
2023 (260)
2021 (251)
2024 (222)
2020 (214)
2009 (195)
2019 (177)
2018 (166)
2017 (127)
2007 (113)
2026 (64)
2006 (46)
2005 (29)
2004 (15)
1998 (6)
2002 (5)
1999 (3)
2003 (2)
2001 (2)
2000 (2)
1987 (1)

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Transcription profiling of rat mammary gland, liver and lung tissues treated with targretin, 9-cis retinoic acid, or 4-hydroxyphenylretinamide

A rexinoid, targretin (TRG) and two retinoids, 9-cis retinoic acid (9cRA) and 4-hydroxyphenylretinamide (4HPR) were examined for their effects on gene expression in rat mammary gland, liver, and lung tissues. The chemopreventive effects of these agents have largely been attributed to their ability t...

ORGANISM(S): Rattus norvegicus

2007-11-06 | E-GEOD-3952 | biostudies-arrayexpress

Differentiation of SH-SY5Y cells by 9 cis retinoic acid

PRJNA636359 | ENA

Modulation of immune cell reactivity with cis-binding Siglec-9 agonists

Primary inflammatory pathologies caused by phagocytes lead to numerous debilitating conditions, ranging from chronic pain to permanent blindness. Siglec-9 is an immunoinhibitory receptor expressed on many types of phagocytes and is a promising target for anti-inflammatory therapeutics. We developed ...

ORGANISM(S): Homo sapiens (Human)

2021-01-14 | PXD018774 | Pride

Transcription profiling of human Caco-2 cells treated with conjugated linoleic acid (CLA)

The effect of CLA on gene expression in Caco-2 cells Experiment Overall Design: Caco-2 cells were treated with linoleic acid (LA; the parent and control fatty acid) trans-10, cis-12 CLA or cis-9, trans-11 CLA for 12 d.

ORGANISM(S): Homo sapiens

2008-06-14 | E-GEOD-6518 | biostudies-arrayexpress

9-cis-retinoic acid improves disease modelling in iPSC-derived liver organoids

PRJNA1242238 | ENA

The identification of a 9-cis retinol dehydrogenase in the mouse embryo reveals a pathway for synthesis of 9-cis retinoic acid.

Not available

S-EPMC22501 | biostudies-literature

Transcription profiling of mouse 3T3-L1 adipocyte tissue culture treated with cis-9,trans-11 conjugated linoleic acid(c9t11 CLA)

Trans-10, Cis-12 conjugated linoleic acid (t10c12 CLA) causes fat loss in mouse 3T3-L1 adipocyte tissue culture; however cis-9, trans-11 CLA does not (this series). The early transcriptome changes were analyzed using high-density microarrays to better characterize the signaling pathways responding t...

ORGANISM(S): Mus musculus

2008-06-16 | E-GEOD-8684 | biostudies-arrayexpress

Differentiation of SH-SY5Y cells by 9 cis retinoic acid

The RNA seq analysis aims to determine the changes in gene expression between undifferentiated and differentiated SH SY5Y neuroblastoma cells following differentiation with 9 cis retinoic acid.

ORGANISM(S): Homo sapiens

2024-09-24 | GSE151554 | GEO

Prevention of Postsurgical Lymphedema by 9-cis Retinoic Acid.

Not available

S-EPMC7513676 | biostudies-literature

Evaluation of 9-cis-retinyl acetate therapy in Rpe65-/- mice.

Not available

S-EPMC2764364 | biostudies-literature

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