Macromolecular cell composition

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Unknown (181)
Transcriptomics (138)
Proteomics (45)
Genomics (23)
Metabolomics (6)
Models (1)
Other (1)

Organisms

Homo sapiens (50)
Mus musculus (35)
Saccharomyces cerevisiae (13)
Arabidopsis thaliana (9)
Drosophila melanogaster (8)
Geobacter sulfurreducens PCA (5)
Schizosaccharomyces pombe (5)
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Caenorhabditis elegans (3)
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Saccharomyces cerevisiae S288C (1)
Staphylococcus aureus (1)

Organisms

Schizosaccharomyces pombe (1)

Repository

biostudies-arrayexpress (160)
pride (32)
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Tissue

Cell culture (6)
Whole body (3)
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Seed (2)
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Hypocotyl (1)
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Heart (1)
Testis (1)
Fibroblast (1)
Permanent cell line cell (1)
Epithelial cell (1)
Colon (1)

Disease

Disease free (2)
Colon cancer (2)
Not Available (1)

Technology Type

Mass Spectrometry (32)
Bottom-up proteomics (12)
Shotgun proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Mass spectrometry (3)
Mass spectrometry assay (2)
Affinity proteomics (2)
Gel-based experiment (2)
Data-dependent acquisition (2)
Top-down proteomics (2)
NMR spectroscopy assay (1)
NMR spectroscopy (1)
Metaproteomics (1)
SWATH MS (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

TripleTOF 5600 (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
Ultrospec 3000 (1)
BD GasPak 150 Jar (1)
G2565AA DNA microarray scanner [Agilent] (1)
DNA Microarray Scanner BA [Agilent Technologies] (1)
GenePix 4000B [Axon Instruments] (1)
Sony SH800S (1)
DNBSEQ-G400 (1)
NextSeq 550 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Instrument (1)
LTQ Orbitrap Elite (1)
Q Exactive (1)
LTQ Orbitrap (1)
Q Exactive HF-X (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Bruker (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2014 (39)
2016 (27)
2015 (20)
2010 (20)
2013 (17)
2012 (16)
2022 (10)
2011 (8)
2008 (8)
2024 (7)
2006 (5)
2019 (5)
2018 (4)
2009 (4)
2017 (4)
2007 (3)
2026 (3)
2025 (3)
2021 (2)
2023 (2)
2020 (2)
2004 (1)

UNIPROT ID/AC

A1KYB0_TOBAC (3)
A0A1S3ZDG6_TOBAC (3)
A0A1S4CC76_TOBAC (3)
I7GVS5_TOBAC (3)
A0A1S3ZKW0_TOBAC (3)
METK1_TOBAC (3)
FRI1_TOBAC (3)
A0A140G1S2_TOBAC (3)
A0A1S4ARB9_TOBAC (3)
A0A1S3ZJA2_TOBAC (3)
A0A1S4CHM7_TOBAC (3)
A0A1S3Y5T4_TOBAC (3)
A0A1S4A1J2_TOBAC (3)
Q6Q8A6_TOBAC (3)
PMGI_TOBAC (3)
A0A1S3XU77_TOBAC (3)
A0A1S3XE25_TOBAC (3)
A0A1S4BMU1_TOBAC (3)
A0A1S4B543_TOBAC (3)
A0A1S3Z2K5_TOBAC (3)
A0A1S3Z744_TOBAC (3)
PDC2_TOBAC (3)
A0A140G1P7_TOBAC (3)
Q75ZD8_TOBAC (3)
A0A1S4C7C1_TOBAC (3)
Q1G0Z1_TOBAC (3)
A0A1S3YNC4_TOBAC (3)
IF411_TOBAC (3)
A0A1S4DBQ6_TOBAC (3)
A0A1S3XHC2_TOBAC (3)

CHEBI ID

CHEBI:18237 (2)
CHEBI:17126 (2)
CHEBI:16811 (2)
CHEBI:28300 (2)
CHEBI:24898 (2)
CHEBI:27266 (2)
CHEBI:17750 (2)
CHEBI:16449 (2)
CHEBI:18012 (2)
CHEBI:16737 (2)
CHEBI:16919 (2)
CHEBI:145104 (1)
CHEBI:145103 (1)
CHEBI:145102 (1)
CHEBI:145101 (1)
CHEBI:145100 (1)
CHEBI:145098 (1)
CHEBI:145099 (1)
CHEBI:145097 (1)
CHEBI:145095 (1)
CHEBI:145093 (1)
CHEBI:145092 (1)
CHEBI:80897 (1)
CHEBI:139424 (1)
CHEBI:145096 (1)
CHEBI:75839 (1)
CHEBI:132542 (1)
CHEBI:156118 (1)
CHEBI:65751 (1)
CHEBI:183249 (1)

Metabolite Name

15-hydroxy-eremantholide B (1)
Viguilenin (1)
1b,2a-epoxy tagitinin C (1)
Flavonol 3-o-glycosylated (1)
Pinocembrin (1)
2-oxo-8b-methacryloyloxy-guaia-3,10(14),11(13)-trien-6a,12-olide (1)
Galangin (1)
Genkwanin (1)
3,4',5-trihydroxy-7-methoxyflavone (1)
15-hydroxy-eremantholide b (1)
Hispidulin (1)
3,4,5-tri-O-E-caffeoylquinic acid (1)
Hirsutinolide (1)
3-O-caffeoyl-2-(2-butyl)-2-hydroxybutanedioic acid (1)
Budlein B (1)
4,5-di-O-E-caffeoylquinic acid (1)
3,4-di-O-E-caffeoylquinic acid (1)
Apigenin-7-O-glucoside (1)
Spiraeoside (1)
3,5-di-O-E-caffeoylquinic acid (1)
3-O-caffeoyl-2-(2-propyl)-2-hydroxybutanedioic acid (1)
1,5-di-O-E-caffeoylquinic acid (1)
Kaempferol-3-O-rutinoside (1)
Kaempferol-3-O-glucoside (1)
Quercetin-3-O-glucoronoside (1)
Quercetin-3-O-arabino-rhamnoside (1)
Luteolin-7-O-glucoside (1)
Methyl 5-O-E-caffeoylquinate (1)
5-O-E-feruloylquinic acid (1)
4-O-caffeoyl-2-C-methyl-D-erythronic acid (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

First Public Date

2022 (2)
2013 (1)

Study type

Transcription profiling by array (56)
RNA-seq of coding RNA (45)
ChIP-seq (19)
Other (8)
ChIP-chip by tiling array (6)
RNA-seq of non coding RNA (6)
Transcription profiling by tiling array (4)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
Proteomic profiling by array (2)
ChIP-chip by SNP array (1)
Transcription profiling by RT-PCR (1)
RIP-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2014 (42)
2016 (33)
2010 (24)
2013 (23)
2025 (23)
2021 (21)
2015 (20)
2023 (20)
2012 (19)
2022 (16)
2020 (14)
2019 (13)
2024 (12)
2011 (12)
2018 (11)
2008 (10)
2017 (10)
2009 (6)
2006 (6)
2007 (3)
2026 (2)
2004 (1)

Lab affiliation

Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (8)
School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, United Kingdom (2)
Department of Biochemistry & Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, the Netherlands (1)
University of Cologne CEPLAS/ Institute for Plant Sciences Plant Metabolic Biochemistry Lab Center of Molecular Biosciences (CoMB), Room 3.10 Zülpicher Straße 47a D-50674 Cologne Germany (1)
1-Tyrolean Cancer Research Institute (TKFI), Innrain 66, A-6020 Innsbruck, Austria 2-Institute of Molecular Biology and Center for Molecular Biosciences, University of Innsbruck, Technikerstrasse 25, A-6020 Innsbruck, Austria. (1)
Department of Biochemistry, Soonchunhyang University, College of Medicine, Cheonan, 31151, Republic of Korea (1)
Instituto de Biofísica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro, Brazil and UNIGRANRIO-Universidade do Grande Rio, Caxias, Rio de Janeiro-Brazil (1)
Carnegie Institution for Science Dept. of Embryology 3520 San Martin Dr Baltimore, MD 21218 (1)
Department of Biology, Stanford University (1)
Division of Gene Technology, KU Leuven, B-3001 Leuven, Belgium (1)
MRC-Laboratory of Molecular Biology Francis Crick Avenus Cambridge CB20QH (1)
Institute of Exptl. Internal Medicine Medical Faculty, University Magdeburg Leipzigerstr. 44 39120 Magdeburg, Germany (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht (1)
University of Washington Dept of Genome Sciences (1)
University of Washington Department of Genome Sciences (1)
Research Scientist (1)
University of Bern (1)
Institute of Parasitology, Biology Center, Czech Academy of Sciences, Branišovská 31, 370 05 České Budějovice, CZECH REPUBLIC (1)
University of Washington Department of Genome Sciences (1)
Chair of Molecular Biology Institute of Cellular and Molecular Biology Estonia (1)
Dep. of Biology, University of Fribourg, Chemin du Musee 10, CH-1700 Fribourg (1)
ETH Zurich (1)
Center for Microbial Ecology and Technology (CMET), Faculty of Bioscience Engineering Ghent University, Coupure Links 653, 9000 Ghent, Belgium, Center for Advanced Process Technology for Urban Resource recovery (CAPTURE), Frieda Saeysstraat 1, 9052 Ghent, Belgium (1)
ETH Zurich Institute of Molecular Biology & Biophysics (1)

Tags

xref:PubMed:36653366 (1)
xref:PubMed:24014766 (1)

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The Bardet-Biedl protein Bbs1 controls photoreceptor outer segment protein and lipid composition

Summary

Primary cilia are key sensory organelles whose dysfunction leads to ciliopathy disorders such as Bardet-Biedl syndrome (BBS). Retinal degeneration is common in ciliopathies, since the outer segments (OSs) of photoreceptors are highly specialized primary cilia. BBS...

2022-02-18 | MTBLS4013 | MetaboLights

The metabolite composition in the feces of mice after Romboutsia treatment

Specific gut microbiota is critically involved in metabolic diseases, including obesity. Through analysis of gut microbiota in diabetic patients and animal models, it was found that Romboutsia ilealis is closely associated with obesity. Here, our findings show that oral administration of Romboutsia ...

2026-03-19 | MTBLS11895 | MetaboLights

Phylogenetic Diversity in the Macromolecular Composition of Microalgae.

Not available

S-EPMC4882041 | biostudies-literature

Macromolecular composition and substrate range of three marine fungi across major cell types.

Not available

S-EPMC10117802 | biostudies-literature

The extracellular fluid macromolecular composition differentially affects cell-substrate adhesion and cell morphology.

Not available

S-EPMC6560040 | biostudies-literature

Marked differences in tight junction composition and macromolecular permeability among different intestinal cell types.

Not available

S-EPMC5793346 | biostudies-literature

Cell-Penetrating Peptide-Based Delivery of Macromolecular Drugs: Development, Strategies, and Progress.

Not available

S-EPMC10377493 | biostudies-literature

Discrete cytosolic macromolecular BRAF complexes exhibit distinct activities and composition.

Not available

S-EPMC5331759 | biostudies-literature

Macromolecular crowding regulates matrix composition and gene expression in human gingival fibroblast cultures.

Not available

S-EPMC9899282 | biostudies-literature

Growth rate and limiting substrate define the nutritional composition and cell size of microbial biomass for food applications

Microbial biomass has emerged as a promising sustainable protein alternative. The cultivation conditions affect the composition of microbial cells, and hence their quality and nutritional value. Here, we investigated the relationship between growth rate, substrate availability and cell composition a...

ORGANISM(S): Komagataella phaffii Cupriavidus necator

2024-01-26 | PXD041491 | Pride

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396 Results

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Organisms

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Tissue

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