Malhotra A A - OmicsDI

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Unknown (2070)
Proteomics (24)
Transcriptomics (21)
Genomics (2)
Metabolomics (1)

Organisms

Homo sapiens (27)
Mus musculus (4)
Macaca fascicularis (2)
Saccharomyces cerevisiae (2)
Mycobacterium tuberculosis (1)
Oncorhynchus mykiss (1)
Mycobacterium tuberculosis H37Rv (1)
Mycolicibacterium smegmatis (1)
Bombyx mori (1)
Naja kaouthia (1)
Naja naja (1)
Naja oxiana (1)
Plasmodium falciparum (1)
Plasmodium falciparum 3D7 (1)
Trimeresurus erythrurus (1)

Organisms

Mycolicibacterium smegmatis (1)
Homo sapiens (1)

Repository

pride (23)
biostudies-arrayexpress (19)
geo (2)
ENA (2)
MassIVE (1)
MetaboLights (1)

Tissue

Cell culture (8)
Epithelial cell (2)
Blood cell (1)
Bone marrow (1)
Breast (1)
Breast cancer cell line (1)
Fibroblast (1)
Osteosarcoma cell line (1)
Permanent cell line cell (1)
Spleen (1)
Stem cell (1)
Umbilical cord (1)
Venom (1)

Disease

Breast cancer (5)
Malignant neoplasm of ovary (2)
Plasmodium falciparum malaria (2)
Cervical cancer (1)
Graft-versus-host disease (1)
Prostate cancer (1)

Technology Type

Mass Spectrometry (23)
Shotgun proteomics (16)
Bottom-up proteomics (5)
Data-dependent acquisition (3)
Top-down proteomics (3)
Mass spectrometry (1)
Affinity purification coupled with mass spectrometry proteomics (1)
SWATH MS (1)

Instrument Platform

10x Genomics Chromium Controller (3)
Illumina NovaSeq 6000 (3)
VersArray ChipReader [Bio-Rad Laboratories] (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2026 (6)
2024 (5)
2015 (4)
2018 (3)
2011 (3)
2022 (3)
2020 (3)
2025 (3)
2010 (2)
2006 (2)
2021 (2)
2023 (2)
2014 (1)
2013 (1)
2012 (1)
2009 (1)
2007 (1)
2019 (1)
2017 (1)
2016 (1)

CHEBI ID

CHEBI:10049 (1)
CHEBI:10093 (1)
CHEBI:101085 (1)
CHEBI:109895 (1)
CHEBI:1109 (1)
CHEBI:12387 (1)
CHEBI:124991 (1)
CHEBI:125535 (1)
CHEBI:131887 (1)
CHEBI:131924 (1)
CHEBI:132448 (1)
CHEBI:132883 (1)
CHEBI:133026 (1)
CHEBI:133094 (1)
CHEBI:133657 (1)
CHEBI:133662 (1)
CHEBI:133756 (1)
CHEBI:133758 (1)
CHEBI:134092 (1)
CHEBI:134281 (1)
CHEBI:134418 (1)
CHEBI:134442 (1)
CHEBI:134454 (1)
CHEBI:134548 (1)
CHEBI:134583 (1)
CHEBI:135654 (1)
CHEBI:135736 (1)
CHEBI:135876 (1)
CHEBI:135893 (1)
CHEBI:135954 (1)

Metabolite Name

(1'S,2R,2'R,10'S,11'S,15'S)-17'-hydroxy-2',15'-dimethylspiro[oxolane-2,14'-tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane]-6',8'-diene-5,5'-dione (1)
(1-{1-[(4-hydroxy-3-methoxyphenyl)methyl]-7,8-dimethoxy-2,2-dimethyl-1,2,3,4-tetrahydro-2λ⁵-isoquinolin-2-yl}ethylidene)-λ⁴-oxidanyliumyl (1)
(10,14a-dihydroxy-2,2,4a,6a,6b,9,9,12a-octamethyl-docosahydropicen-13-yl)oxidanesulfonic acid (1)
(10S,14S)-10,14,20-trimethyl-16-methylidene-22-azahexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²³.0¹⁷,²²]tetracosan-5-ylium-7-olate (1)
(12aR)-4-(dimethylamino)-4a,5,10,12a-tetrahydroxy-6-methylidene-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aR)-7-chloro-4-(dimethylamino)-4,6,10,12a-tetrahydroxy-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aS)-4,7-bis(dimethylamino)-10,12,12a-trihydroxy-1,3,11-trioxo-9-(2-oxoacetamido)-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid (1)
(12aS)-9-{[2-(tert-butylamino)-1-hydroxyethylidene]amino}-4,7-bis(dimethylamino)-5,10,12,12a-tetrahydroxy-1,3,11-trioxo-1,2,3,4,4a,5,5a,6,11,12a-decahydrotetracene-2-carboximidic acid (1)
(13-{[5-(acetyloxy)-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1,6,6,11,15-pentamethyl-14-(6-methylhept-5-en-2-yl)-5-[(3,4,5-trihydroxyoxan-2-yl)oxy]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-9-yl)oxidanesulfonic acid (1)
(13R)-5-(3,4-dihydroxyphenyl)-6,9,17,19,21-pentahydroxy-13-(4-hydroxyphenyl)-4,12,14-trioxapentacyclo[11.7.1.0²,¹¹.0³,⁸.0¹⁵,²⁰]henicosa-2(11),3(8),5,9,15,17,19-heptaen-7-one (1)
(15Z)-Octadec-15-en-9,11,13-triynoic acid (1)
(1R)-1,4-bis({[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy})-3-hydroxy-5-(sulfooxy)cyclohexane-1-carboxylic acid (1)
(1R,16Z,24E,26E,28Z)-1,18,26,27-tetrahydroxy-19,30-dimethoxy-12-[1-(3-methoxy-4-oxocyclohexyl)propan-2-yl]-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1R,16Z,24E,26E,28Z)-1,18-dihydroxy-12-[1-(4-hydroxy-3-methoxycyclohexyl)propan-2-yl]-19,30-dimethoxy-15,17,21,23,29-pentamethyl-35-methylidene-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1R,2R,3R,11S,12S,14R,26R)-5,6',7',12-tetrahydroxy-6-methoxy-7,21,30-trimethyl-27-oxo-3',4'-dihydro-2'H-17,19,28-trioxa-24-thia-13,30-diazaspiro[heptacyclo[12.9.6.1³,¹¹.0²,¹³.0⁴,⁹.0¹⁵,²³.0¹⁶,²⁰]triacontane-26,1'-isoquinoline]-4(9),5,7,15(23),16(20),21-hexaen-22-yl acetate (1)
(1R,2S,3R,4R,5S,6R,7S)-1,3,4,5,7,8,9,10,10-Nonachlorotricyclo[5.2.1.0²,⁶]dec-8-ene (1)
(1R,6S,12R,15S)-5,5-Dimethyl-11,13-dioxatetracyclo[7.5.1.0¹,⁶.0¹²,¹⁵]pentadec-8-ene (1)
(1R,9S,18Z,24R)-12-[1-(4-chloro-3-hydroxycyclohexyl)prop-1-en-2-yl]-17-ethyl-1,14-dihydroxy-23,25-dimethoxy-13,19,21,27-tetramethyl-11,28-dioxa-4-azatricyclo[22.3.1.0⁴,⁹]octacos-18-ene-2,3,10,16-tetrone (1)
(1R,9S,18Z,24R)-12-[1-(4-chloro-3-methoxycyclohexyl)prop-1-en-2-yl]-17-ethyl-1,14-dihydroxy-13-(hydroxymethyl)-23,25-dimethoxy-19,21,27-trimethyl-11,28-dioxa-4-azatricyclo[22.3.1.0⁴,⁹]octacos-18-ene-2,3,10,16-tetrone (1)
(1S)-1,3,4-trihydroxy-5-(sulfooxy)cyclohexane-1-carboxylic acid (1)
(1S,16Z,24E,26E,28Z)-1,18-dihydroxy-12-{1-[4-(2-hydroxyethoxy)-3-methoxycyclohexyl]propan-2-yl}-15-(hydroxymethyl)-19,30-dimethoxy-17,21,23,29,35-pentamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1S,16Z,24E,26E,28Z)-1,18-dihydroxy-12-{1-[4-(2-hydroxyethoxy)-5-methoxy-2-oxocyclohexyl]propan-2-yl}-19,30-dimethoxy-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1S,2R,10S,11S,14R,15R)-2,15-Dimethyl-14-[(2R)-6-methylheptan-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-ene (1)
(1S,2S,10S,11S,15R)-14-(5,6-dimethylheptan-2-yl)-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,17-diol (1)
(1S,2S,5R,7R,10S,11S,14R,15S,17S)-14-[(1R)-1,2-Dihydroxyethyl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,14,17-triol (1)
(1S,2S,5S,10R,11S,14R,15R)-14-[(2R,5R)-5-Ethyl-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-ol (1)
(1S,2S,7S,10R,15R)-2,15-dimethyl-14-(1,4,6-trihydroxy-6-methylheptan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,9,16-triol (1)
(1S,5R,13R,17S)-15-[(1S,3S,5R,13R)-10,14-Dimethoxy-4-methyl-12-oxa-4-azapentacyclo[9.6.1.0¹,¹³.0⁵,¹⁷.0⁷,¹⁸]octadeca-7(18),8,10,14,16-pentaen-3-yl]-17-hydroxy-10-methoxy-4-methyl-12-oxa-4-azapentacyclo[9.6.1.0¹,¹³.0⁵,¹⁷.0⁷,¹⁸]octadeca-7(18),8,10,15-tetraen-14-one (1)
(2-Aminoethoxy)[(2R)-2-[(1Z,9Z)-octadeca-1,9-dien-1-yloxy]-3-[(6Z,9Z,12Z,15Z)-octadeca-6,9,12,15-tetraenoyloxy]propoxy]phosphinic acid (1)
(2-Aminoethoxy)[(2R)-2-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]-3-[(9Z)-octadeca-1,9-dien-1-yloxy]propoxy]phosphinic acid (1)

First Public Date

2022 (1)
2014 (1)

Study type

Transcription profiling by array (14)
RNA-seq of coding RNA from single cells (3)
RNA-seq of coding RNA (2)

Release Date

2023 (248)
2024 (237)
2022 (228)
2021 (208)
2025 (202)
2020 (146)
2019 (117)
2018 (113)
2017 (86)
2015 (83)
2016 (80)
2014 (74)
2013 (51)
2011 (40)
2012 (39)
2026 (38)
2010 (30)
2009 (19)
2007 (13)
2008 (11)
2006 (8)
2005 (7)
2004 (5)
2002 (2)
2003 (1)
2001 (1)
2000 (1)
1999 (1)

Lab affiliation

Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (2)
Stanford University, Canary Center at Stanford for Cancer Early Detection, USA (2)
Additional Professor, Department of Medical Oncology (Lab.), Dr B.R.A.I.R.C.H., AIIMS, New Delhi (1)
Additional Professor, Deptt. of Medical Oncology (Lab), Dr BRAIRCH, AIIMS, New Delhi (1)
All India Institute of Medical Sciences, New Delhi, India (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, The Netherlands; Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht (1)
Canary Center at Stanford For Cancer Early Detection Department of Radiology School of Medicine Stanford University (1)
Center for Genomic Regulation, 08003 Barcelona, Spain (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr Aiguader 88, Barcelona 08003, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain; ICREA, Pg. Lluis Companys 23, Barcelona 08010, Spain (1)
Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, 08003 Barcelona, Spain (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (1)
Department of Radiology Stanford School of Medicine Stanford University (1)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Palo Alto, CA USA (1)
Department of Radiology Canary Center at Stanford for Cancer Early Detection School of Medicine Stanford University (1)
International Centre for Genetic engineering and Biotechnology, New Delhi, India (1)
Malaria Biology Group, ICGEB, New Delhi, India (1)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (1)
Molecular Toxinology Lab, Department of Molecular Biology & Biotechnology, Tezpur University, Assam, India (1)
Professor, Medicine and Cellular and Molecular Medicine Founding Director, Institute for Network Medicine University of California San Diego (1)
Reader in Zoology (Molecular Ecology) (1)
SCB Group International Centre for Genetic Engineering and Biotechnology, New Delhi India (1)

Tags

xref:PubMed:35404097 (1)
xref:PubMed:19955211 (1)

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HeLa gene expression profile

Gene expression in HeLa cells was profiled using Affymetrix gene expression Human HG-U133_Plus_2 array. Transcript signal was mapped against the chromosome coordinates (probe-by-probe basis) using the HG-U133A_2 Annotations CSV file for hg18 build of the human genome provided by Affymetrix. Karnani...

ORGANISM(S): Homo sapiens

2011-01-07 | E-GEOD-26471 | biostudies-arrayexpress

Individualizing antipsychotic drug therapy in schizophrenia: the promise of pharmacogenetics.

Not available

S-EPMC2276697 | biostudies-literature

Obstructive sleep apnea in older adults is a distinctly different physiological phenotype.

Not available

S-EPMC4098808 | biostudies-literature

A necessary paradigm shift: recognizing the surgeon-advocate in academic surgery.

Not available

S-EPMC12448761 | biostudies-literature

A Time Course Analysis of the Effects of Marinobufagenin in Human Dermal Fibroblasts

Gene expression profiling of the effets of marinobufagenin in a time-course study (0, 0.25, 0.5, 0.75, 1, 2, 3, 6, 9, 12, 15, and 24 hrs) to examine the temporal changes in gene expression in a human dermal fibroblast cell line. Keywords: Time course Cells were treated with 10 nM of marinobufagenin ...

ORGANISM(S): Homo sapiens

2007-12-06 | E-GEOD-9806 | biostudies-arrayexpress

Gender-based differences in physician payments within the fee-for-service system in Ontario: a retrospective, cross-sectional study.

Not available

S-EPMC8547248 | biostudies-literature

LIX11 vs H37Rv under Log vs stationary phase growth

Transcription analysis of M-NM-^TpknK mutant (LIX11) versus wild type H37Rv during logarithmic and stationary phase growth. This will elucidate the genes regulated by PknK during transition from logarithmic growth to stationary phase growth. Two color Experiment,Organism: Mycobacterium tuberculosis,...

ORGANISM(S): Mycobacterium tuberculosis H37Rv

2012-06-01 | E-GEOD-37823 | biostudies-arrayexpress

Transcription profiling of human HeLa cells synchronized at the G1-S boundary and then sampled at 2-hour intervals during S-phase

The experimental strategy adopted to map this profile involved isolation of replication products from HeLa cells synchronized at the G1-S boundary by thymidine-aphidicolin double block. Cells released from the block were labeled with BrdU at every two-hour interval of the 10 hours of S-phase and DNA...

ORGANISM(S): Homo sapiens

2006-11-02 | E-MEXP-708 | biostudies-arrayexpress

Diffusion tensor imaging measures of white matter compared to myelin basic protein immunofluorescence in tissue cleared intact brains.

Not available

S-EPMC5198630 | biostudies-literature

Comparative analysis of human matrix metalloproteinases: Emerging therapeutic targets in diseases.

Not available

S-EPMC3064848 | biostudies-literature