Mammary - OmicsDI

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Unknown (8480)
Transcriptomics (5671)
Genomics (4985)
Proteomics (571)
Metabolomics (120)
Other (87)
Methylation profiling (58)
Models (15)
Multiomics (8)
Genomic (5)
Clinical (1)

Organisms

Homo sapiens (4507)
Mus musculus (2105)
Bos taurus (218)
Rattus norvegicus (163)
Canis lupus familiaris (63)
Capra hircus (57)
Drosophila melanogaster (32)
Ovis aries (26)
Sus scrofa (20)
synthetic construct (20)
Gallus gallus (13)
Saccharomyces cerevisiae (7)
Mustela putorius furo (7)
Pinus radiata (4)
Schizosaccharomyces pombe (4)
Musca domestica (3)
Streptococcus thermophilus (3)
Streptococcus agalactiae (3)
Arabidopsis thaliana (3)
Macaca fascicularis (3)
Rattus (2)
Meleagris gallopavo (2)
Lactococcus lactis (2)
Bifidobacterium breve UCC2003 (2)
Nicotiana tabacum (2)
Oryza sativa Japonica Group (2)
Danio rerio (2)
gut metagenome (2)
Eucalyptus nitens (1)
Apodemus sylvaticus (1)

Organisms

Mus musculus (1457)
Homo sapiens (833)
Mus spretus (245)
Bos taurus (165)
Rattus norvegicus (93)
Capra hircus (60)
Canis lupus familiaris (55)
Ovis aries (12)
Sus scrofa (8)
Staphylococcus aureus (5)
Mouse mammary tumor virus (4)
Corynebacterium pseudotuberculosis (4)
milk metagenome (4)
Notamacropus eugenii (4)
Bos grunniens (3)
Lactiplantibacillus plantarum (3)
Equus caballus (3)
mouse gut metagenome (3)
Mustela putorius furo (2)
Drosophila melanogaster (2)
Mus (2)
Bubalus bubalis (2)
bovine metagenome (2)
Mastomys (1)
Mycoplasma crocodyli (1)
Mycoplasma leachii (1)
[Mycoplasma] mobile (1)
Mycoplasma suis (1)
Mesomycoplasma conjunctivae (1)
Mycoplasma capricolum (1)

Repository

biostudies-arrayexpress (3971)
ENA (3601)
geo (2456)
EGA (723)
pride (235)
MassIVE (203)
MetaboLights (114)
ExpressionAtlas (39)
PeptideAtlas (36)
jPOST (35)
LINCS (35)
iProX (27)
EVA (20)
GPMDB (16)
Cell Collective (9)
NODE (9)
BioModels (5)
dbGaP (5)
PAXDB (4)
GNPS (3)
MetabolomicsWorkbench (2)
FAIRDOMHub (1)

Tissue

Mammary gland (39)
Spleen (8)
Lung (6)
Pituitary gland (4)
Ovary (4)
Uterus (4)
Testis (4)
Liver (4)
Cerebellum (4)
Caecum (3)
Colon (3)
Stomach (3)
Pancreas (3)
Cerebral cortex (3)
Aorta (3)
Cortex of kidney (3)
Hypothalamus (3)
Vagina (3)
Prostate gland (3)
Adrenal gland (3)
Thyroid gland (3)
Renal medulla (3)
Tongue (3)
Cardiac ventricle (2)
Small intestine (2)
Thymus (2)
Placenta (2)
Tonsil (2)
Duodenum (2)
Epididymis (2)

Disease

Adenocarcinoma (8)
Hepatocellular carcinoma (2)
Melanoma (2)
Poorly differentiated hypernephroma (1)
AIDs related Burkitts lymphoma (1)
Adenocarcinoma prostate PC-3 subline isolated from liver metastasis in mice (1)
Adenocarcinoma of prostate (1)
Chronic myelogenous (blast crisis) leukemia (1)
Poorly differentiated B cell origin leukemia (1)
Acute lymphoblastic (T-ALL) leukemia (1)
Adenocarcinoma of lung (1)
Carcinoma, renal cell (1)
Malignant melanoma (1)
Adenocarcinoma of colon (1)
Metastatic malignant melanoma (1)
Adenocarcinoma, breast grown from mouse mammary fat pad (1)
Promyelocytic leukemia (1)
Malignant amelanocytic melanoma (1)
Large cell undifferentiated lung (1)
Adenocarcinoma HER2/ERBB2 transfectant of MDA-MB-435 melanoma (1)
Lymphoblastic Burkitt's lymphoma (1)
Adenomyosis (1)
Uterine fibroid (1)
Neuromuscular pain (1)
Endometriosis (1)
Renal adenocarcinoma (1)
Renal carcinoma (1)
Colon carcinoma (1)
Rheumatoid arthritis (1)
Parkinson's disease (1)

Technology Type

Illumina HiSeq 2000 (16)
Illumina Genome Analyzer II (6)
ILLUMINA, Illumina HiSeq 2500 (3)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (3)
Illumina MiSeq (3)
Illumina HiSeq 2500, ILLUMINA (2)
Illumina HiSeq 2500 (ILLUMINA) (2)
Illumina HiSeq 2000, Illumina MiSeq, ILLUMINA, Illumina HiSeq 2500 (2)
Illumina HiSeq 2000, Illumina MiSeq (2)
ILLUMINA, Illumina HiSeq 2000 (2)
Illumina HiSeq 2500, ILLUMINA, Illumina MiSeq, Illumina HiSeq 2000 (2)
Illumina 15K (2)
Illumina MiSeq, NextSeq 500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
Illumina HumanExome Array (1)
NextSeq 500, ILLUMINA (1)
ILLUMINA, NextSeq 500, HiSeq X Ten (1)
Combined on identical nucleotide universal identifier, Illumina HumanWG-6 version 3 or Illumina HumanHT-12 expression bead chip (1)
Exiqon 7th generation miRCURY LNA microRNA microarray system (1)
Illumina HumanWG-6 (1)
Illumina HiSeq 2500, Illumina HiSeq 4000, ILLUMINA, NextSeq 500 (1)
Illumina HiSeq 2500, ILLUMINA, NextSeq 500 (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina MiSeq, ILLUMINA (1)
ILLUMINA, NextSeq 500 (1)
IlluminaHuman HT12, IlluminaHuman AWG-6 and HT12 (1)
Affymetrix SNP 6.0 (1)
CYTOSCANHD, ILLUMINA, HUMANOMNI1QUAD, HUMANOMNIEXPRESS, Affymetrix HG_U133_+2, Illumina HiSeq 2000 (1)
Illumina ChIP-Sequencing, Illumina MBD-Sequencing, Illumina beadarray, Illumina HiSeq 2500, Illumina MiSeq, Illumina Bisulfite-Sequencing (1)
ILLUMINA, Illumina MiSeq (1)

Instrument Platform

Illumina HiSeq 2500 (61)
Illumina NovaSeq 6000 (59)
NextSeq 500 (57)
Illumina HiSeq 4000 (41)
Illumina HiSeq 2000 (40)
Illumina Genome Analyzer IIx (8)
- (8)
Illumina MiSeq (7)
NextSeq 550 (7)
GenePix 4000B [Axon Instruments] (6)
DNBSEQ-G400 (6)
Illumina NovaSeq X (5)
Ion Torrent Proton (5)
NextSeq 2000 (5)
Scanning hardware (4)
HiSeq X Ten (4)
Microcentrifuge (3)
ScanArray 4000XL [PerkinElmer] (3)
Illumina Genome Analyzer II (3)
None (3)
NA (3)
Illumina HiSeq 1500 (3)
Axon Instruments GenePix 4000B scanner (2)
454 GS FLX+ (2)
AB 5500 Genetic Analyzer (2)
ScanArray 5000 [PerkinElmer] (2)
Axon- GenePix4000B (2)
Illumina HiSeq 1000 (2)
Illumina HiSeq 3000 (2)
DELL PRECISION T7500 (1)

Publication Date

2014 (645)
2013 (622)
2015 (580)
2010 (531)
2012 (528)
2011 (501)
2016 (408)
2025 (287)
2022 (285)
2024 (266)
2009 (260)
2020 (255)
2023 (254)
2021 (251)
2008 (246)
2019 (245)
2017 (240)
2026 (234)
2018 (214)
2007 (137)
2006 (69)
2005 (63)
2004 (14)
2003 (5)
2002 (4)

UNIPROT ID/AC

1433B_BOVIN (1)
1433B_HUMAN (1)
1433E_BOVIN (1)
1433E_HUMAN (1)
1433F_BOVIN (1)
1433F_HUMAN (1)
1433G_BOVIN (1)
1433G_HUMAN (1)
1433S_BOVIN (1)
1433S_HUMAN (1)
1433T_BOVIN (1)
1433T_HUMAN (1)
1433Z_BOVIN (1)
1433Z_HUMAN (1)
2AAA_BOVIN (1)
2AAA_HUMAN (1)
2ABA_HUMAN (1)
2ABG_HUMAN (1)
3HAO_BOVIN (1)
3HIDH_BOVIN (1)
3HIDH_HUMAN (1)
4EBP1_BOVIN (1)
4EBP2_HUMAN (1)
4F2_HUMAN (1)
5NTC_BOVIN (1)
6PGD_HUMAN (1)
6PGL_BOVIN (1)
6PGL_HUMAN (1)
89462.XP_006039905.1 (1)
89462.XP_006039931.1 (1)

ENSEMBL ID

ENSBTAG00000006045 (23)
ENSBTAG00000015980 (23)
ENSBTAG00000020527 (23)
ENSBTAG00000012586 (21)
ENSBTAG00000003758 (20)
ENSBTAG00000033186 (18)
ENSBTAG00000011424 (17)
ENSBTAG00000021746 (16)
ENSBTAG00000001601 (15)
ENSBTAG00000033217 (15)
ENSBTAG00000001928 (14)
ENSBTAG00000010799 (14)
ENSBTAG00000002507 (13)
ENSBTAG00000004230 (12)
ENSBTAG00000021879 (12)
ENSBTAG00000022004 (12)
ENSBTAG00000013953 (11)
ENSBTAP00000003343 (11)
ENSBTAG00000013363 (10)
ENSBTAG00000013527 (10)
ENSBTAG00000025868 (10)
ENSBTAG00000040295 (10)
ENSBTAG00000014423 (9)
ENSBTAG00000015438 (9)
ENSBTAG00000039684 (9)
ENSBTAG00000001414 (8)
ENSBTAG00000004553 (8)
ENSBTAG00000009646 (8)
ENSBTAG00000019915 (8)
ENSBTAG00000000073 (7)

CHEBI ID

CHEBI:15428 (27)
CHEBI:16919 (27)
CHEBI:32816 (24)
CHEBI:17268 (23)
CHEBI:30769 (23)
CHEBI:18132 (22)
CHEBI:15891 (22)
CHEBI:17234 (18)
CHEBI:17754 (14)
CHEBI:17716 (9)
CHEBI:14314 (9)
CHEBI:15721 (8)
CHEBI:16810 (1)
CHEBI:35366 (1)
CHEBI:15351 (1)
CHEBI:24996 (1)
CHEBI:48153 (1)
CHEBI:16332 (1)
CHEBI:17797 (1)
CHEBI:17363 (1)
CHEBI:18009 (1)
CHEBI:16863 (1)
CHEBI:16938 (1)
CHEBI:17138 (1)
CHEBI:15361 (1)
CHEBI:16905 (1)
CHEBI:16474 (1)
CHEBI:16526 (1)
CHEBI:16108 (1)
CHEBI:15946 (1)

Metabolite Name

Creatine (21)
Glycine (19)
Betaine (17)
Taurine (17)
Glycerophosphocholine (17)
Choline (16)
Adenine (16)
Creatinine (16)
Leucine (15)
Adenosine (15)
Alanine (15)
Glycine (14)
Tyrosine (14)
Uridine (14)
Histidine (13)
Creatine (13)
Cytosine (13)
Isoleucine (13)
L-Tyrosine (13)
L-Phenylalanine (13)
Hypoxanthine (13)
Taurine (12)
Glucose (12)
Choline (12)
Lactate (12)
Uracil (12)
Valine (12)
Ornithine (12)
Methionine (12)
Phenylalanine (12)

First Public Date

2014 (679)
2017 (397)
2024 (341)
2023 (275)
2025 (245)
2022 (245)
2026 (240)
2021 (238)
2020 (225)
2019 (192)
2018 (167)
2015 (156)
2013 (111)
2016 (89)
2012 (1)

Modelling Approach

Ordinary differential equation model (4)

Study status

Completed (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (8)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (4)
CRUK Beatson Institute (4)
Cellzome (3)
EDyP (3)
AmsterdamUMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, The Netherlands (2)
Beijing Key Laboratory for Dairy Cow Nutrition, Beijing University of Agriculture (2)
CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland (2)
College of Life Sciences, Shandong Normal University (2)
Department of Cancer and Inflammation Research, Institute of Molecular Medicine, University of Southern Denmark (2)
Elson S. Floyd College of Medicine, Washington State University Spokane (2)
Faculty of Health Sciences, University of Macau, Macau, China (2)
Mass Spectrometry/Proteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands. (2)
Monash University (2)
Université Paris-Saclay, INRAE, AgroParisTech, GABI, 78350, Jouy-en-Josas, France (2)
Washington State University (2)
1 Garvan Institute of Medical Research and The Kinghorn Cancer Centre, 384 Victoria Street Darlinghurst Sydney, NSW, 2010, Australia. 2 St Vincent’s Clinical School, Faculty of Medicine, UNSW Sydney, Australia. (1)
1, Department of Biology, Institute of Molecular Systems Biology, ETH, Zurich, Switzerland 2, Faculty of Science, University of Zurich, Zurich, Switzerland (1)
1. Division of Experimental Medicine, McGill University, Montreal, QC 2. Segal Cancer Proteomics Centre, Lady Davis Institute for Medical Research, Jewish General Hospital, Montreal, QC 3. Department of Pathology, Segal Cancer Centre, Lady Davis Institute for Medical Research, Jewish General Hospital, McGill University, Montreal, QC 4. Segal Cancer Centre, Lady Davis Institute for Medical Research, Jewish General Hospital, Montreal, QC 5. Department of Oncology, McGill University, Montreal, QC (1)
1.Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, Quebec, Canada 2.Gerald Bronfman Department of Oncology, Jewish General Hospital, McGill University, Montreal, Quebec (1)
1Cancer Program, Biomedicine Discovery Institute, Monash University, Melbourne, VIC 3800, Australia 2Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC 3800, Australia (1)
Assistant Professor, Departments of Oncology & Pathology, McGill University Principal Investigator, Cancer Research Program, MUHC-RI 1001 Decarie Blvd, EM2.2218 514.934.1934 ext 76307 Montréal, Canada (1)
Associate Professor Regional Centre for Biotechnology (1)
Associate Professor of Pharmacology & Toxicology, Indiana University School of Medicine, Indianapolis, IN (1)
BK21 Plus KNU Multi-Omics based Creative Drug Research Team, College of Pharmacy, Research Institute of Pharmaceutical Sciences, Kyungpook National University, Republic of Korea (1)
Beijing University of Agriculture, China (1)
BioOrganic Mass Spectrometry laboratory (LSMBO) Institut Plurisciplinaire Hubert Curien University of Strasbourg. France (1)
Biochemistry, Baylor College of Medicine (1)
Biological Sciences University of Southampton (1)

Keyword

Adjuvants, Vaccine (1)
Vaccines (1)
Metronidazole (1)
Molgramostim (1)
Sargramostim (1)

IsPrivate

False (5)

Model Flag

Non Miriam (1)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (18)
viruses (4)

Modification

2x(15)N labeled L-lysine (3)
N6 (3)
4x(15)N labeled L-arginine (2)
4 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (2571)
RNA-seq of coding RNA (371)
ChIP-seq (180)
Comparative genomic hybridization by array (174)
Methylation profiling by array (101)
Unknown experiment type (99)
Other (58)
RNA-seq of non coding RNA (46)
ChIP-chip by tiling array (40)
Genotyping by array (38)
Methylation profiling by high throughput sequencing (30)
MicroRNA profiling by array (29)
Proteomic profiling by array (25)
Transcription profiling by RT-PCR (22)
RNA-seq of coding RNA from single cells (22)
DNA-seq (21)
RNA-seq of total RNA (20)
RNAi profiling by array (18)
ChIP-chip by array (18)
Cell line - High-throughput sequencing (11)
ATAC-seq (7)
Animal - High-throughput sequencing (6)
Human - High-throughput sequencing (5)
Transcription profiling by SAGE (4)
Animal - One-color microarray (4)
Cell line - One-color microarray (4)
Human - One-color microarray (4)
MicroRNA profiling by high throughput sequencing (4)
RIP-seq (4)
Bisulfite-seq (3)

Release Date

2014 (928)
2015 (888)
2016 (875)
2013 (791)
2022 (750)
2021 (750)
2012 (739)
2010 (690)
2020 (676)
2023 (640)
2011 (621)
2019 (568)
2017 (555)
2024 (547)
2025 (519)
2018 (511)
2009 (398)
2008 (341)
2007 (181)
2006 (108)
2026 (95)
2005 (86)
2004 (40)
2003 (29)
2002 (21)
1999 (19)
2001 (17)
2000 (15)
1998 (15)
1997 (3)

Location

United States (1)

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1H NMR based urinary metabolites profiling dataset of canine mammary tumors

The identification of efficient and sensitive biomarkers for non-invasive tests is one of the major challenges in cancer diagnosis. To address this challenge, metabolomics is widely applied for identifying biomarkers that detects abnormal changes in cancer patients. Canine mammary tumors exhibit ...

2022-02-24 | MTBLS2550 | MetaboLights

BACKGROUND: Lactation is extremely important for dairy cows; however, the understanding of the underlying metabolic mechanisms is very limited. This study was conducted to investigate the inherent metabolic patterns during lactation using the overall biofluid metabolomics and the...

2018-03-16 | MTBLS411 | MetaboLights

Silage-derived flavonoids reprogram rumen microbiota to improve milk fat synthesis via rumen-mammary gland axis

Inoculation with homofermentative lactic acid bacteria (LAB) effectively enhances the silage quality of forages. Moreover, feeding such LAB-inoculated silage modulates rumen microbiota composition and metabolites, thereby improving ruminant production performance. Nevertheless, the specific mecha...

2026-01-11 | MTBLS13651 | MetaboLights

Silage-derived flavonoids reprogram rumen microbiota to improve milk fat synthesis via rumen-mammary gland axis

2026-01-10 | MTBLS13648 | MetaboLights

Effects of bariatric and antibiotic treatment surgery on mammary carcinogenesis

Not available

ORGANISM(S): Mus musculus

ST000728 | MetabolomicsWorkbench

Compilation of transcriptomics, non-targeted metabolomics and targeted metabolomics data in bovine mammary epithelial cells stimulated by ten different essential amino acids (Targeted metabolomics)

Divergence in the targeted amino acid profilings of bovine mammary epithelial cells (BMECs) were systematically captured with regard to 10 individual essential amino acid (EAA) availability. BMECs cultured in 6-well plates were first serum-starved overnight and subsequently assigned to 1 of 12 tr...

2024-03-04 | MTBLS3956 | MetaboLights

Compilation of transcriptomics, non-targeted metabolomics and targeted metabolomics data in bovine mammary epithelial cells stimulated by ten different essential amino acids (Untargeted metabolomics)

Divergence in the non-targeted metabolite profilings of bovine mammary epithelial cells (BMECs) were systematically captured with regard to 10 individual essential amino acid (EAA) availability. BMECs cultured in 6-well plates were first serum-starved overnight and subsequently assigned to 1 of 1...

2024-03-04 | MTBLS7789 | MetaboLights

Transcription profiling of rat mammary tumors induced by N-methyl-N-nitrosurea (NMU) and normal mammary gland

Rat mammary tumors induced by N-methyl-N-nitrosurea (NMU) and normal mammary gland

ORGANISM(S): Rattus norvegicus

2007-09-22 | E-GEOD-1872 | biostudies-arrayexpress

Establishment of goat mammary organoid cultures modeling the mammary gland development and lactation

The lactating mammary glands in ruminants play a pivotal economic role in agriculture and food nutrition. The need for an improved 3D in vitro model to study its lactating biology highlights the importance of ongoing research in this field. Overcoming these challenges represents a crucial area of ...

ORGANISM(S): Capra hircus (Goat)

2025-05-06 | PXD050745 | Pride

An epigenetic memory of pregnancy in the mouse mammary gland

Pregnancy is the major modulator of mammary gland activity. It induces a tremendous expansion of the mammary epithelium and the generation of alveolar structures for milk production. Anecdotal evidence from multiparous humans indicates that the mammary gland may react less strongly to the first preg...

ORGANISM(S): Mus musculus

2015-05-15 | E-GEOD-67386 | biostudies-arrayexpress

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