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Transcriptomics (1733)
Unknown (1195)
Proteomics (658)
Metabolomics (468)
Genomics (245)
Other (11)
Multiomics (4)
Models (2)

Organisms

Homo sapiens (1507)
Mus musculus (372)
Rattus norvegicus (30)
Macaca mulatta (19)
Danio rerio (15)
Gallus gallus (14)
Arabidopsis thaliana (13)
Drosophila melanogaster (13)
Saccharomyces cerevisiae (11)
Mycobacterium tuberculosis (10)
Plasmodium falciparum (10)
Plasmodium falciparum 3D7 (9)
Schizosaccharomyces pombe (7)
Pan troglodytes (6)
Sus scrofa (5)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (5)
Tetrahymena thermophila (4)
Streptococcus pyogenes (4)
Bos taurus (4)
Caenorhabditis elegans (4)
Callithrix jacchus (3)
synthetic construct (3)
Macaca fascicularis (3)
Campylobacter jejuni (3)
Candida albicans (3)
Pimephales promelas (2)
Marmota monax (2)
Haemophilus influenzae (2)
Papio hamadryas (2)
Burkholderia mallei (2)

Repository

biostudies-arrayexpress (1964)
MetaboLights (466)
MassIVE (213)
PAXDB (204)
pride (86)
PeptideAtlas (51)
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EGA (34)
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ENA (2)
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GNPS (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (18)
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Disease

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Colorectal adenocarcinoma (1)
Carcinoma (1)
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Technology Type

Mass spectrometry (358)
Mass Spectrometry (87)
Mass spectrometry assay (84)
Shotgun proteomics (37)
NMR spectroscopy (28)
Bottom-up proteomics (20)
Affinity purification coupled with mass spectrometry proteomics (11)
Data-dependent acquisition (10)
Data-independent acquisition (8)
SWATH MS (6)
Top-down proteomics (6)
Gel-based experiment (4)
Flow cytometry (3)
GCP (3)
L1000 (3)
Mass spectrometry (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Illumina HiSeq 2000 (2)
NMR spectroscopy assay (2)
All-ion fragmentation (2)
ILLUMINA, Illumina Genome Analyzer IIx, Illumina HiSeq 2500 (1)
ILLUMINA, Illumina HiSeq 2500 (1)
ILLUMINA, Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina 2.5M, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2000, Illumina_2.5M (1)
ESI (1)
Proteogenomics (1)

Instrument Platform

Illumina NovaSeq 6000 (47)
NextSeq 500 (32)
Illumina HiSeq 2500 (27)
Illumina HiSeq 4000 (22)
Illumina HiSeq 2000 (14)
Illumina HiSeq 1500 (5)
NextSeq 550 (5)
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10x Genomics Chromium Controller (4)
N/A (4)
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NextSeq 2000 (3)
Illumina HiSeq 3000 (3)
Illumina Genome Analyzer IIx (2)
Bioanalyser (2)
HiSeq X Ten (2)
Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 (1)
Illumina HiSeq 2000 platform (1)
Hamamatsu Nanozoomer S60 (1)
Molecular Biology laboratory (1)
Mammalian cell culture laboratory (1)
FastPrep-24 5G bead beater, Qubit Fluorometer (1)
12 well TC-treated plate, LETs buffer, dry ice (1)
HPC (1)
NEXTflex small RNA library preparation kit v4; TruSeq exome RNA library preparation kit (Illumina); High Sensitivity DNA ScreenTape D1000 (1)
QIAzol and miRNeasy micro kits; Bioanalyzer TapeStation 2100; Qubit microRNA assay (1)
BeadBug Benchtop homogenizer (1)
Illumina Genome Analyser II (1)
10X Chromium Controller (1)

Publication Date

2014 (292)
2010 (276)
2015 (253)
2013 (231)
2012 (227)
2020 (182)
2011 (180)
2016 (167)
2025 (126)
2022 (120)
2008 (117)
2009 (116)
2024 (109)
2023 (109)
2026 (105)
2019 (97)
2021 (96)
2018 (74)
2017 (73)
2007 (58)
2005 (20)
2006 (17)
2004 (7)
2003 (3)

UNIPROT ID/AC

TPIS_HUMAN (69)
CATA_HUMAN (68)
G3P_HUMAN (68)
HSPB1_HUMAN (68)
LDHB_HUMAN (68)
6PGD_HUMAN (67)
6PGL_HUMAN (67)
ARPC3_HUMAN (67)
BLMH_HUMAN (67)
BLVRB_HUMAN (67)
CALR_HUMAN (67)
CAP1_HUMAN (67)
COF1_HUMAN (67)
ENOA_HUMAN (67)
FABP5_HUMAN (67)
G6PD_HUMAN (67)
G6PI_HUMAN (67)
GGH_HUMAN (67)
HS90A_HUMAN (67)
HS90B_HUMAN (67)
IF5A1_HUMAN (67)
KPYM_HUMAN (67)
MDHC_HUMAN (67)
MYL6_HUMAN (67)
PARK7_HUMAN (67)
PEBP1_HUMAN (67)
PGK1_HUMAN (67)
PPIA_HUMAN (67)
PRDX2_HUMAN (67)
PRDX5_HUMAN (67)

ENSEMBL ID

ENSECAG00000004960 (49)
ENSECAG00000006095 (49)
ENSECAG00000009556 (49)
ENSECAG00000014414 (49)
ENSECAG00000021580 (49)
ENSECAP00000007368 (49)
ENSECAG00000001810 (48)
ENSECAG00000004973 (48)
ENSECAG00000009752 (48)
ENSECAG00000011847 (48)
ENSECAG00000019927 (48)
ENSECAG00000021499 (48)
ENSECAP00000003495 (48)
ENSECAP00000013223 (48)
ENSECAG00000014858 (47)
ENSECAG00000000207 (46)
ENSECAG00000010481 (46)
ENSECAG00000000548 (44)
ENSECAP00000007504 (44)
ENSECAG00000004201 (42)
ENSECAG00000012096 (42)
ENSECAG00000016475 (42)
ENSECAG00000024571 (42)
ENSECAG00000019900 (40)
ENSECAG00000010107 (39)
ENSECAG00000015581 (39)
ENSECAG00000021882 (39)
ENSECAG00000000841 (38)
ENSECAG00000003345 (38)
ENSECAG00000004925 (38)

CHEBI ID

CHEBI:1001 (1)
CHEBI:1002 (1)
CHEBI:10059 (1)
CHEBI:10066 (1)
CHEBI:10067 (1)
CHEBI:10080 (1)
CHEBI:10113 (1)
CHEBI:10202 (1)
CHEBI:10231 (1)
CHEBI:10232 (1)
CHEBI:10246 (1)
CHEBI:10269 (1)
CHEBI:10270 (1)
CHEBI:1029 (1)
CHEBI:10296 (1)
CHEBI:1030 (1)
CHEBI:10300 (1)
CHEBI:103211 (1)
CHEBI:10343 (1)
CHEBI:10358 (1)
CHEBI:10375 (1)
CHEBI:10380 (1)
CHEBI:10428 (1)
CHEBI:10433 (1)
CHEBI:10489 (1)
CHEBI:10490 (1)
CHEBI:10491 (1)
CHEBI:10492 (1)
CHEBI:10493 (1)
CHEBI:10494 (1)

Metabolite Name

Hypoxanthine (64)
Adenosine (61)
Adenine (60)
Uridine (60)
Creatinine (59)
Taurine (59)
Guanosine (55)
Creatine (53)
Inosine (53)
L-Phenylalanine (52)
L-Tyrosine (50)
Uracil (46)
Tryptophan (45)
Xanthine (45)
Glycine (44)
Betaine (43)
Choline (43)
Creatine (42)
Cytidine (42)
Inosine (41)
Citrulline (40)
L-Histidine (40)
Lactate (40)
Ornithine (40)
AMP (39)
Glutamine (39)
Leucine (39)
Tyrosine (39)
Creatinine (38)
Methionine (38)

IsPrivate

False (1)

Submitter Keywords

FROG (1)

First Public Date

2026 (1)
2014 (1)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (1097)
RNA-seq of coding RNA (246)
ChIP-seq (172)
Comparative genomic hybridization by array (49)
Methylation profiling by array (49)
ChIP-chip by tiling array (39)
RNA-seq of coding RNA from single cells (36)
Unknown experiment type (34)
RNA-seq of non coding RNA (34)
Other (28)
Methylation profiling by high throughput sequencing (26)
ChIP-chip by array (21)
Proteomic profiling by array (18)
MicroRNA profiling by array (14)
Transcription profiling by RT-PCR (13)
DNA-seq (11)
Genotyping by array (10)
Cell line - High-throughput sequencing (9)
Transcription profiling by tiling array (6)
ATAC-seq (6)
RNA-seq of total RNA (5)
Human - High-throughput sequencing (4)
Cell line - One-color microarray (3)
MicroRNA profiling by high throughput sequencing (3)
Single nucleus RNA sequencing (3)
Transcription profiling by SAGE (2)
Baseline (2)
Animal - High-throughput sequencing (2)
RNAi profiling by array (2)
Spatial transcriptomics by high-throughput sequencing (2)

Release Date

2010 (280)
2013 (244)
2012 (237)
2014 (235)
2022 (223)
2015 (222)
2011 (187)
2023 (179)
2025 (169)
2021 (163)
2016 (155)
2024 (146)
2008 (125)
2009 (119)
2020 (108)
2019 (72)
2018 (63)
2017 (63)
2007 (63)
2026 (46)
2005 (23)
2006 (20)
2004 (9)
2003 (4)
2002 (2)
1997 (1)

Lab affiliation

Institute of Microbiology - BioCeV, Academy of Sciences of the Czech Republic (3)
Copenhagen Center for Glycomics and Department of Cellular and Molecular Medicine, Faculty of Health Sciences, University of Copenhagen, DK-2200 Copenhagen N, Denmark (2)
Department of Human Anatomy, Histology and Embryology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology (2)
Laboratory of Peroxisome Biology and Intracellular Communication, Department of Cellular and Molecular Medicine, Katholieke Universiteit Leuven, 3000 Leuven, Belgium (2)
The University of Sydney (2)
Westlake University (2)
1Departments of Medicine & 2Pathology, Case Western Reserve University and University Hospitals Case Medical Center; 3Department of Molecular Biology & Microbiology Case Western Reserve University School of Medicine, Cleveland, Ohio 44106,USA. (1)
3 Univ. Grenoble Alpes, CNRS, INRAE, CEA, IRIG-LPCV, 38000 Grenoble, FranceLPCV - to be completed 4. Univ. Grenoble Alpes, CEA, INSERM, UA13 BGE, CNRS, CEA, FR2048, Grenoble, France (1)
Alkahest Inc. (1)
Associate Professor, Department of Microbiology and Immunology (1)
BIOCEV, First Faculty of Medicine, Charles University, Czech Republic (1)
Bio-Organic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Science, University of Utrecht, Padualaan 8, Utrecht, 3584 CH, The Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Science4Life, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Brunel University London (1)
Brunel University, UK (1)
Cambridge University (1)
Chair of Physiology, Department of Veterinary Sciences, LMU Munich, D-82152 Martinsried, Germany (1)
College of Pharmacy, Gansu University of Chinese Medicine, Lanzhou, China (1)
Comparative Perinatal Development - Department of Veterinary Sciences - Faculty of Pharmaceutical, Biomedical and Veterinary Sciences - University of Antwerp (1)
Copenhagen Center for Glycomics (CCG), Department of Cellular and Molecular Medicine, University of Copenhagen, Denmark (1)
Copenhagen Center for Glycomics, Departments of Cellular and Molecular Medicine, Faculty of Health Sciences, University of Copenhagen, Blegdamsvej 3, DK-2200 Copenhagen N, Denmark (1)
Danish Cancer Society The Danish Cancer Society Research Center Copenhagen, Denmark (1)
Department of Biochemistry, Soonchunhyang University, College of Medicine, Cheonan, 31151, Republic of Korea (1)
Department of Biological Science, National University of Singapore (1)
Department of Biological Science, National University of Singapore Singapore (1)
Department of Biological Sciences, College of Natural Sciences, Seoul National University, Seoul, 08826, Republic of Korea (1)
Department of Biological Sciences, National University of Singapore (1)
Department of Biology, University of Ottawa, Ottawa, Canada, K1N 6N5 (1)
Department of Biotechnology, Delft University of Technology, The Netherlands. (1)

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xref:PubMed:23393228 (1)

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Sex comb on midleg (Scm) is a functional link between PcG repressive complexes in Drosophila

We profiled Sex comb on midleg (Scm), Pc and E(z) in fly embryos and S2 based on BioTAP-XL ChIP-seq. ChIP-seq revealed that Scm is co-localized with PRC1, PRC2, and H3K27me3 in both S2 cells and embryos. Genomic binding/occupancy profiling of Scm, Pc and E(z) by high throughput sequencing

ORGANISM(S): Drosophila melanogaster

2015-07-09 | E-GEOD-66183 | biostudies-arrayexpress

Transcription profiling of human 293 cells

A long form (tRNase ZL) of tRNA 3' processing endoribonuclease (tRNase Z, or 3' tRNase) can cleave any target RNA at any desired site under the direction of artificial small guide RNA (sgRNA). We discovered in human kidney 293 cell extracts various new small noncoding RNAs (ncRNAs) including 5'-half...

ORGANISM(S): Homo sapiens

2009-06-23 | E-GEOD-12524 | biostudies-arrayexpress

Transcription profiling of mouse (6 wk) inducibly expresssing human alpha1-antitrypsin in the liver

In the classical form of Î±1antitrypsin deficiency a mutant protein accumulates in a polymerized form in the ER of liver cells causing liver damage and carcinogenesis by a gain-of-toxic function mechanism. Recent studies have indicated that the accumulation of mutant Î±1antitrypsin Z in the ER spec...

ORGANISM(S): Mus musculus

2008-06-16 | E-GEOD-8600 | biostudies-arrayexpress

Transcription profiling of mouse transgenics (3 mo) inducibly expresssing human alpha1-antitrypsin in the liver

ORGANISM(S): Mus musculus

2008-06-16 | E-GEOD-8599 | biostudies-arrayexpress

Nucleocytoplasmic O-Man glycoproteome

Dynamic cycling of N-Acetylglucosamine (GlcNAc) on serine (Ser) and threonine (Thr) residues (O-GlcNAcylation) is an essential process in all eukaryotic cells except yeast, e.g Saccharomyces cerevisiae. O-GlcNAcylation modulates signaling and cellular processes in an intricate interplay with protein...

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) Schizosaccharomyces pombe

2015-12-08 | PXD002924 | Pride

O-glycoproteomics Saccharomyces cerevisiae

P. falciparum (lab strain 3d7) schizonts untreated control vs P. falciparum (lab strain 3d7) reference RNA pool

Calcium is a universal second messenger molecule which plays a significant role in several biological processes. Presence of calcium sensors (calmodulins) and calcium-dependent protein kinases in Plasmodium species suggests an important role of calcium-dependent signaling pathways in the regulation ...

ORGANISM(S): Plasmodium falciparum 3D7

2012-07-14 | E-GEOD-33795 | biostudies-arrayexpress

extracellular calcium chelation experiment_P. falciparum (lab strain 3d7) schizonts treated with ionomycin vs P. falciparum (lab strain 3d7) reference RNA pool

ORGANISM(S): Plasmodium falciparum 3D7

2012-07-14 | E-GEOD-33835 | biostudies-arrayexpress

extracellular calcium chelation experiment_P. falciparum (lab strain 3d7) schizonts untreated vs P. falciparum (lab strain 3d7) reference RNA pool

ORGANISM(S): Plasmodium falciparum 3D7

2012-07-14 | E-GEOD-33834 | biostudies-arrayexpress

extracellular calcium chelation experiment_P. falciparum (lab strain 3d7) schizonts treated with EGTA and ionomycin vs P. falciparum (lab strain 3d7) reference RNA pool

ORGANISM(S): Plasmodium falciparum 3D7

2012-07-14 | E-GEOD-33836 | biostudies-arrayexpress

P. falciparum (lab strain 3d7) schizonts treated with A23187 vs P. falciparum (lab strain 3d7) reference RNA pool