Mandel J J - OmicsDI

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Unknown (313)
Transcriptomics (18)
Proteomics (18)
Genomics (11)
Metabolomics (2)
Multiomics (1)

Organisms

Homo sapiens (29)
Mus musculus (10)
Rattus norvegicus (2)
Fusarium sinicum (1)
Arabidopsis thaliana (1)
Bacteria (1)
Caenorhabditis elegans (1)
Cricetulus griseus (1)
Drosophila melanogaster (1)
Human gammaherpesvirus 8 (1)

Repository

biostudies-arrayexpress (23)
pride (15)
EGA (6)
MetaboLights (2)
MassIVE (1)
PAXDB (1)
PeptideAtlas (1)

Tissue

Cell culture (2)
Kidney (2)
Others (1)
Cotyledon (1)
Epithelial cell (1)
Hypocotyl (1)
Leaf (1)
Root (1)
Sciatic nerve (1)

Disease

Huntington Disease (2)
Disease free (1)

Technology Type

Mass Spectrometry (15)
Shotgun proteomics (10)
Mass spectrometry (2)
Affinity purification coupled with mass spectrometry proteomics (2)
SWATH MS (2)
Illumina HiSeq 2000 (1)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2500 (1)
Q Exactive (1)
5975C Series GC/MSD (Agilent) (1)
6550 Q-TOF LC-MS Agilent (1)
LTQ Orbitrap Elite (1)

Publication Date

2019 (6)
2023 (5)
2014 (5)
2015 (3)
2012 (3)
2007 (3)
2018 (3)
2022 (2)
2021 (2)
2024 (1)
2017 (1)
2016 (1)
2013 (1)
2011 (1)
2010 (1)
2009 (1)
2008 (1)
2026 (1)
2025 (1)
2020 (1)

UNIPROT ID/AC

1433B_HUMAN (1)
1433E_HUMAN (1)
1433F_HUMAN (1)
1433G_HUMAN (1)
1433S_HUMAN (1)
1433T_HUMAN (1)
1433Z_HUMAN (1)
2A5A_HUMAN (1)
2A5B_HUMAN (1)
2A5D_HUMAN (1)
2A5E_HUMAN (1)
2A5G_HUMAN (1)
2AAA_HUMAN (1)
2AAB_HUMAN (1)
2ABA_HUMAN (1)
2ABD_HUMAN (1)
3BHS1_HUMAN (1)
3BHS2_HUMAN (1)
3BHS7_HUMAN (1)
3BP1_HUMAN (1)
3BP2_HUMAN (1)
3BP5L_HUMAN (1)
3HAO_HUMAN (1)
3HIDH_HUMAN (1)
3MG_HUMAN (1)
41_HUMAN (1)
4EBP1_HUMAN (1)
4EBP2_HUMAN (1)
4EBP3_HUMAN (1)
4ET_HUMAN (1)

ENSEMBL ID

ENSG00000147251 (1)
ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:142276 (1)
CHEBI:143032 (1)
CHEBI:143033 (1)
CHEBI:143034 (1)
CHEBI:143035 (1)
CHEBI:143036 (1)
CHEBI:143037 (1)
CHEBI:143038 (1)
CHEBI:143039 (1)
CHEBI:143040 (1)
CHEBI:143041 (1)
CHEBI:143042 (1)
CHEBI:143043 (1)
CHEBI:143044 (1)
CHEBI:143045 (1)
CHEBI:143046 (1)
CHEBI:143047 (1)
CHEBI:143048 (1)
CHEBI:143049 (1)
CHEBI:143050 (1)
CHEBI:143051 (1)
CHEBI:143052 (1)
CHEBI:143053 (1)
CHEBI:143054 (1)
CHEBI:143055 (1)
CHEBI:143056 (1)
CHEBI:143057 (1)
CHEBI:143058 (1)
CHEBI:143059 (1)
CHEBI:143060 (1)

Metabolite Name

(+)-12-methyl myristic acid (1)
(2E,4E,6E,8E,10E)-11-[(4R)-4-hydroxy-2,6,6-trimethylcyclohexen-1-yl]-5,9-dimethylundeca-2,4,6,8,10-pentaenal (1)
(2S,4S)-Pinnatanine (1)
(S,E)-Lyratol propanoate (1)
1,2-Di-O-palmitoyl-3-O-(6-sulfoquinovopyranosyl)glycerol (1)
12'-Apo-b-carotene-3,12'-diol (1)
15:0 Cholesteryl ester (1)
17-(7-hydroxy-6-methylhept-5-en-2-yl)-4,4,10,13,14-pentamethyl-1,2,5,6,12,15,16,17-octahydrocyclopenta[a]phenanthren-3-one (1)
2,2,3-Trimethyltridecanoic acid (1)
2,3-dihydroxypropyl icos-11-enoate (1)
2-O-(alpha-D-glucopyranosyl)-D-glycerate (1)
2-[3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,6-dienyl]benzene-1,4-diol (1)
2-palmitoleoyl-glycerol (1)
3-Hydroxy-6,8-dimethoxy-7(11)-eremophilen-12,8-olide (1)
3-Ketoapotrichothecene (1)
3-O-alpha-L-Arabinopyranosylproanthocyanidin A5' (1)
6,7-Dihydro-4-(hydroxymethyl)-2-(p-hydroxyphenethyl)-7-methyl-5H-2-pyrindinium (1)
8-Acetoxy-4-acoren-3-one (1)
Acoric acid (1)
Annuionone B (1)
Apigenin 7-[rhamnosyl-(1->2)-galacturonide] (1)
Artemisinic acid (1)
Azadiradionolide (1)
Barringtogenol C (1)
Caffeic acid (1)
Catechin 7,4'-dimethyl ether (1)
Cyclopassifloside III (1)
D-glucose (1)
Dehydrotomatine (1)
Dehydrovomifoliol (1)

Study type

Transcription profiling by array (9)
ChIP-seq (5)
RNA-seq of coding RNA (4)
RNA-seq of coding RNA from single cells (2)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA from single cells (1)
Human - Single-cell sequencing (1)

Release Date

2022 (33)
2021 (29)
2025 (29)
2024 (27)
2023 (27)
2015 (26)
2020 (21)
2019 (19)
2018 (18)
2014 (15)
2016 (14)
2012 (14)
2013 (11)
2017 (10)
2009 (10)
2011 (9)
2010 (9)
2007 (6)
2008 (3)
2002 (2)
2026 (1)
2004 (1)
2003 (1)
1999 (1)

Lab affiliation

University of Cologne, Germany (2)
Associate Professor Glyco MS Group Copenhagen Center for Glycomics (CCG) Department of Cellular and Molecular Medicine (24.6.36) University of Copenahgen Blegdamsvej 3 2200 Copenhagen N Denmark (1)
Associate Professor Glyco MS Group Copenhagen Center for Glycomics (CCG) Department of Cellular and Molecular Medicine University of Copenahgen Blegdamsvej 3 2200 Copenhagen N Denmark (1)
CECAD Forschungszentrum, Joseph-Stelzmann-Str. 26, 50931 Köln (1)
Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (1)
Copenhagen Center for Glycomics (CCG), Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department of Biomolecular Sciences. Weizmann Institute of Science. Rehovot, Israel (1)
Department of Molecular Systems Biology, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany (1)
ETH Zürich Institute of Molecular Systems Biology Otto-Stern-Weg 3 8093 Zürich Switzerland (1)
Forschungszentrum Juelich ZEA-3 Analytics (1)
Institut für Molekularbiologie und Tumorforschung (IMT) Biomedizinisches Forschungszentrum Philipps-Universität Marburg Hans-Meerwein-Straße 2 35043 Marburg (Germany) Phone: +49-(0)6421-28-66840 (1)
University Hospital Cologne (1)
University of Cologne Germany (1)

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Attosecond-resolution Hong-Ou-Mandel interferometry.

Not available

S-EPMC5935478 | biostudies-literature

Electronic Hong Ou Mandel interferences to unveil the 2/3 fractional quantum Hall edge channel dynamics.

Not available

S-EPMC12475081 | biostudies-literature

Selective protein enrichment in calcium oxalate stone matrix: a window to pathogenesis?

Not available

S-EPMC8496971 | biostudies-literature

The MitCHAP-60 disease is due to entropic destabilization of the human mitochondrial Hsp60 oligomer.

Not available

S-EPMC2788871 | biostudies-literature

Tonsil Atlas FASTQ files

This repository contains all the FASTQ files for the five data modalities (scRNA-seq, scATAC-seq, Multiome, CITE-seq+scVDJ-seq, and spatial transcriptomics) used in the article \\"An Atlas of Cells in The Human Tonsil,\\" published in Immunity in 2024. Inspired by the TCGA barcodes, we have named ea...

ORGANISM(S): Homo sapiens

2024-05-02 | E-MTAB-13687 | biostudies-arrayexpress

On-chip scalable highly pure and indistinguishable single-photon sources in ordered arrays: Path to quantum optical circuits.

Not available

S-EPMC10848962 | biostudies-literature

Transcription profiling of mouse ADNP knockout vs wild type

The putative transcription factor, activity-dependent neuroprotective protein (ADNP) is a zinc finger and homeodomain - like profile containing protein. ADNP knockout mice die at day 9 of gestation. To reveal ADNP-associated pathways, a 22,690- Affymetrix probe array was used on ADNP knockout and co...

ORGANISM(S): Mus musculus

2008-06-12 | E-GEOD-4068 | biostudies-arrayexpress

Clonal diversity and spatial genetic structure in the long-lived herb, Prairie trillium.

Not available

S-EPMC6802849 | biostudies-literature

Comparison of Conventionally Performed and Intracardiac Echocardiography Guided Catheter Ablation of Atrioventricular Node in Patients with Permanent Atrial Fibrillation-A Retrospective Single-Center Study.

Not available

S-EPMC11312848 | biostudies-literature

Novel oligodendroglial alpha synuclein viral vector models of multiple system atrophy: studies in rodents and nonhuman primates.

Not available

S-EPMC5473003 | biostudies-literature