Marcus K K - OmicsDI

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Unknown (993)
Proteomics (201)
Genomics (60)
Transcriptomics (52)
Metabolomics (6)
Models (2)
Other (1)

Organisms

Homo sapiens (210)
Mus musculus (44)
Staphylococcus aureus (9)
Rattus norvegicus (8)
Halobacterium salinarum NRC-1 (6)
Saccharomyces cerevisiae (5)
Streptococcus pneumoniae (3)
Caenorhabditis elegans (3)
Staphylococcus aureus subsp. aureus str. Newman (2)
Mycobacterium tuberculosis (2)
Danio rerio (2)
Escherichia coli (2)
Streptococcus mutans UA159 (1)
Euglena gracilis (1)
Staphylococcus aureus subsp. aureus USA300 (1)
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Francisella tularensis (1)
Pseudomonas aeruginosa (1)
Actinoplanes sp. SE50/110 (1)
Arabidopsis thaliana (1)
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Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 (1)

Repository

pride (125)
PeptideAtlas (65)
biostudies-arrayexpress (56)
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Tissue

Others (25)
Cell culture (22)
Brain (18)
Cell line cell (12)
T cell (11)
Cerebrospinal fluid (9)
Digestive System (8)
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Female Reproductive System (7)
UWB1.289 cell (6)
Epithelial cell (5)
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K-562 cell (4)
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Blood (3)
Blood plasma (3)
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Primary cell (3)
Adrenal Gland (1)
Brain (1)
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Disease

Parkinson's disease (4)
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Not Available (1)
Acute leukemia (1)
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Bone remodeling disease (1)
Cardiomyopathy (1)
Coronavirus infectious disease (1)
Critical COVID-19 (1)
Duchenne muscular dystrophy (1)
Eye disease (1)
Glaucoma (1)
Hepatitis C (1)
Lewy body dementia (1)
Lymphoma (1)
Malignant mesothelioma (1)
Myofibrillar myopathy (1)
Myofibrillar myopathy 1 (1)
Myopathy (1)
Severe COVID-19 (1)

Technology Type

Mass Spectrometry (125)
Shotgun proteomics (101)
Bottom-up proteomics (17)
SWATH MS (15)
Gel-based experiment (14)
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Data-independent acquisition (7)
Illumina HiSeq 2000 (5)
Data-dependent acquisition (4)
Mass spectrometry (3)
Top-down proteomics (2)
GeneChip HTA 2.0 (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
Illumina CytoSNP, Illumina HumanOmni2.5, ILLUMINA, Illumina 450k, Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
All-ion fragmentation (1)
SRM/MRM (1)

Instrument Platform

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LTQ Orbitrap Velos (28)
QExactive (6)
Unknown (6)
GenePix Professional 4200A [Axon Instruments] (3)
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Illumina NovaSeq 6000 (2)
Q Exactive (2)
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Illumina MiSeq (1)
Instrument (1)
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5975C Series GC/MSD (Agilent) (1)
LTQ Orbitrap Velos (Thermo Scientific) (1)
Liquid Chromatography MS - - hilic (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse-phase (1)
MicrOTOF-Q II ESI-Qq-TOF (Bruker) (1)

Publication Date

2014 (66)
2018 (29)
2016 (21)
2025 (21)
2019 (17)
2011 (16)
2021 (12)
2015 (10)
2020 (10)
2024 (9)
2022 (9)
2010 (7)
2006 (7)
2012 (6)
2023 (6)
2013 (5)
2017 (4)
2026 (4)
2008 (3)
2007 (2)
2009 (1)

UNIPROT ID/AC

A5A3E0 (59)
B3KML9 (59)
B4E3A4 (59)
I3L4N8 (59)
M0QY37 (59)
O43707 (59)
P04264 (59)
P04350 (59)
P04792 (59)
P05787 (59)
P07900 (59)
P08238 (59)
P08729 (59)
P0DMV8 (59)
P11021 (59)
P11142 (59)
P11216 (59)
P11217 (59)
P12814 (59)
P12814-3 (59)
P13645 (59)
P17066 (59)
P30153 (59)
P34931 (59)
P35609 (59)
P35609-2 (59)
P35908 (59)
P54652 (59)
P55072 (59)
P60709 (59)

ENSEMBL ID

ENSG00000170477 (52)
ENSG00000229353 (44)
ENSG00000147251 (21)
ENSG00000247315 (10)
ENSG00000176092 (3)
ENSG00000204131 (3)

CHEBI ID

CHEBI:15971 (2)
CHEBI:16467 (2)
CHEBI:17203 (2)
CHEBI:18019 (2)
CHEBI:16113 (1)
CHEBI:39548 (1)
CHEBI:15366 (1)
CHEBI:15603 (1)
CHEBI:15682 (1)
CHEBI:16015 (1)
CHEBI:16283 (1)
CHEBI:16349 (1)
CHEBI:16643 (1)
CHEBI:16810 (1)
CHEBI:16828 (1)
CHEBI:16857 (1)
CHEBI:16977 (1)
CHEBI:17115 (1)
CHEBI:17191 (1)
CHEBI:17196 (1)
CHEBI:17295 (1)
CHEBI:17533 (1)
CHEBI:17895 (1)
CHEBI:18050 (1)
CHEBI:26806 (1)
CHEBI:28790 (1)
CHEBI:29988 (1)
CHEBI:29993 (1)
CHEBI:30768 (1)
CHEBI:30772 (1)

Metabolite Name

L-arginine (2)
L-histidine (2)
L-lysine (2)
L-proline (2)
(5-L-Glutamyl)-L-glutamine (1)
(N(omega)-L-arginino)succinic acid (1)
2-oxoglutarate (1)
Acetate (1)
Butyrate (1)
Fumarate (1)
Gamma-Glu-Leu (1)
Gamma-Glu-Met (1)
Gamma-Glu-Val (1)
L-alanine (1)
L-asparagine (1)
L-aspartate (1)
L-citrulline (1)
L-cystine (1)
L-glutamate (1)
L-glutamic acid (1)
L-glutamine (1)
L-isoleucine (1)
L-leucine (1)
L-methionine (1)
L-phenylalanine (1)
L-serine (1)
L-threonine (1)
L-tryptophan (1)
L-tyrosine (1)
N-Acetylglutamic acid (1)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (46)
ChIP-seq (3)
RNA-seq of coding RNA (2)
Transcription profiling by SAGE (1)
Animal - Single-cell sequencing (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (121)
2025 (105)
2022 (104)
2023 (94)
2024 (90)
2020 (73)
2019 (71)
2017 (54)
2018 (49)
2015 (44)
2016 (37)
2013 (36)
2011 (32)
2010 (29)
2012 (28)
2014 (27)
2009 (23)
2026 (14)
2008 (9)
2003 (3)
2007 (2)
2005 (2)
2006 (1)
2002 (1)

Lab affiliation

Cellzome (32)
Ruhr-Universität Bochum, Medizinisches Proteom-Center (11)
Cellzome, a GSK company (5)
Medizinisches Proteom-Center, Medical Faculty, Ruhr-University Bochum, 44801 Bochum, Germany (4)
Medizinisches Proteom-Center (3)
Medizinisches Proteom-Center Ruhr-Universität Bochum Zentrum für klinische Forschung (ZKF) Raum 1.055 Universitätsstraße 150 44801 Bochum Germany (3)
Medizinisches Proteom-Center, Medical Faculty, Ruhr-University Bochum, Bochum, Germany (3)
Ruhr University Bochum, Medical Faculty, Medizinisches Proteom-Center (3)
Ruhr-Universität Bochum Medizinisches Proteom-Center (3)
Medizinisches Proteom-Center, Medical Faculty, Ruhr-University Bochum, 44801 Bochum, Germany; 44801 Bochum, Germany (2)
Medizinisches Proteom-Center, Ruhr-Universität Bochum, ZKF 1.055, Universitätsstraße 150, 44801 Bochum, Germany (2)
CECAD and Institute for Genetics Joseph-Stelzmann Straße 26 University of Cologne, Cologne, Germany (1)
CECAD/Institute for Genetics, University of Cologne, Cologne, Germany (1)
Cecad Institute and University of Cologne Joseph-Stelzmann-Strasse 26 50931 Cologne Germany (1)
Clinical Proteomics Medizinisches Proteom-Center Ruhr-University Bochum and Department of Anesthesiology, Intensive Care Medicine and Pain Therapy University Hospital Knappschaftskrankenhaus Bochum (1)
Cornell University (1)
Cornell University, Ithaca, NY, USA (1)
Department Functional Proteomics Medizinisches Proteom-Center Ruhr-University Bochum Building ProDi Gesundheitscampus 4 44780 Bochum Germany (1)
Department of Basic and Clinical Neuroscience, The Maurice Wohl Clinical Neuroscience Institute, Institute of Psychiatry, Psychology, & Neuroscience, King’s College London, London, UK (1)
Department of Pediatric Respiratory Medicine, Immunology and Critical Care Medicine, Charite ‐ Universitatsmedizin, Germany; German Center for Lung Research (DZL), Associated Partner Site, Germany; Berlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Germa (1)
Department of Pharmacology and Chemical Biology, Emory University, USA (1)
Department of Veterinary Medicine, Institute of Microbiology and Epizootics, Centre for Infection Medicine, Freie Universität Berlin, Berlin, Germany (1)
Functional Proteomics Medizinisches Proteom-Center Germany (1)
Heinrich Pette Institute, Leibniz Institute for Experimental Virology, Hamburg, Germany (1)
Institut für Biologische Informationsprozesse Molekular- und Zellphysiologie (IBI-1) Forschungszentrum Jülich 52425 Jülich Germany (1)
Institute for Genetics and Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Joseph-Stelzmann-Str. 26 50931 Cologne, Germany (1)
Institute for Genetics, Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), and University of Cologne, Cologne, Germany (1)
Institute of Genetics and Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Cologne, Germany (1)
Katrin Marcus Medizinisches Proteom-Center Ruhr-Universität Bochum Zentrum für klinische Forschung (ZKF) Raum 1.055 Universitätsstraße 150 44801 Bochum Germany (1)
King's College London, Dept. of Basic and Clinical Neuroscience, Maurice Wohl Clinical Neuroscience Institute, 5 Cutcombe Road, London, SE5 9NU (1)

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A non-canonical vitamin K cycle is a potent ferroptosis suppressor

Raw files corresponding to LC-MS-based relative quantification of oxidized lipids in Pfa1 cells and mouse liver samples subjected to ferroptosis. Data were acquired in parallel reaction monitoring (PRM) MS/MS mode.

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2022-05-19 | MSV000089489 | MassIVE

The gastric H,K-ATPase in stria vascularis contributes to pH regulation of cochlear endolymph but not to K secretion.

Not available

S-EPMC4982335 | biostudies-literature

Apical membrane P2Y4 purinergic receptor controls K+ secretion by strial marginal cell epithelium.

Not available

S-EPMC1298316 | biostudies-literature

Site-specific O-Glycosylation Analysis of Human Blood Plasma Proteins

Here, we report on the site-specific O-glycosylation analysis of human blood plasma glycoproteins. To this end pooled human blood plasma of healthy donors was digested non-specifically using Protein-ase K, followed by a precipitation step, as well as a glycopeptide enrichment and fractionation step ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2015-06-05 | MSV000079141 | MassIVE

Endolymphatic Na⁺ and K⁺ concentrations during cochlear growth and enlargement in mice lacking Slc26a4/pendrin.

Not available

S-EPMC3669272 | biostudies-literature

The binding selectivity of vonoprazan (TAK-438) to the gastric H+, K+ -ATPase.

Not available

S-EPMC4626316 | biostudies-literature

Pten loss and RAS/MAPK activation cooperate to promote EMT and prostate cancer metastasis initiated from stem/progenitor cells

PTEN loss or PI3K/AKT signaling pathway activation correlates with human prostate cancer progression and metastasis. However, in preclinical murine models, deletion of Pten alone fails to mimic the significant metastatic burden that frequently accompanies the end stage of human disease. To identify...

ORGANISM(S): Mus musculus

2012-02-28 | E-GEOD-34839 | biostudies-arrayexpress

Sodium selectivity of semicircular canal duct epithelial cells.

Not available

S-EPMC3180474 | biostudies-literature

Multiple-site concerted proton-electron transfer reactions of hydrogen-bonded phenols are nonadiabatic and well described by semiclassical Marcus theory.

Not available

S-EPMC3476473 | biostudies-literature

The O-glycosylated ectodomain of FXYD5 impairs adhesion by disrupting cell-cell trans-dimerization of Na,K-ATPase β1 subunits.

Not available

S-EPMC4920254 | biostudies-literature