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TranscriptomicsA gene expression microarray for Nicotiana benthamiana based on de novo transcriptome sequence assembly
Gene expression microarray was designed, based on two recently published versions of the N. benthamiana transcriptome (v.3 and v.5). Based on homology searches and hybridization tests we identified the sense strand in 106,684 transcriptome contigs and used this information to design a Nb-105k microa...
ORGANISM(S): Nicotiana benthamiana 
2016-01-08 | E-GEOD-76631 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of tobacco (Nicotiana tabacum) plants in response to sulfur deficiency
The experiment was aimed at identification of genes whose expression is up- or down-regulated in tobacco plants in response to sulfur (S) deficiency. Comparison of response to S deficit of LA Burley 21 line and AB3 line (overexpressing UP9C in antisense orientation) was done to clarify the function ...
ORGANISM(S): Nicotiana tabacum 
2013-02-14 | E-MEXP-3699 | biostudies-arrayexpress
TranscriptomicsBarely leaf dark-induced senescence
Time-course transcriptional profiling of senescing barley leaves. In this model, the senescence process was induced by continued incubation of the seedlings in darkness. Plant samples for the expression analysis were collected before senescence induction (Day 0) and after 3,7 and 10 days of incubati...
ORGANISM(S): Hordeum vulgare 
2014-10-22 | E-GEOD-62539 | biostudies-arrayexpress
ProteomicsLongitudinal evaluation of biomarkers in wound fluids of venous leg ulcers treated with a protease-modulating wound dressing
Venous leg ulcers (VLU) represent a clinical challenge and impair the patient’s quality of life. Venous insufficiency is underlying the protracted healing. We report the protein expression pattern for biomarkers in VLU wound fluids and compare these with acute split-thickness wound fluids. Fifty-se...
ORGANISM(S): Homo Sapiens 
2023-08-22 | PXD025748 | panorama
TranscriptomicsGene expression profiling reveals potential prognostic biomarkers associated with the progression of heart failure
Heart failure (HF) is the most common cause of morbidity and mortality in the developed countries, especially considering the present demographic tendencies in those populations. We identified biologically relevant transcripts that are significantly altered in the early phase of myocardial infarctio...
ORGANISM(S): Homo sapiens 
2015-05-21 | E-GEOD-59867 | biostudies-arrayexpress
TranscriptomicsHepatic molecular alterations more than muscle's differentiate obese hyperphagic mice from those prolonged fed with the high-fat diet
Although mitochondrial dysfunctions are implicated in the pathogenesis of obesity, the molecular mechanisms underlying obesity-related metabolic abnormalities are still not well established. To acquire a comprehensive picture of mitochondrial molecular changes within metabolically active tissues, we...
ORGANISM(S): Mus musculus 
2013-05-01 | E-GEOD-43691 | biostudies-arrayexpress
TranscriptomicsMicroarray gene expression profiling of fine needle aspiration biopsy of thyroid nodules in Polish patients
With increasing detection of thyroid nodules due to the widespread availability of sonography, and the subjective nature of cytological assessment, molecular evaluation can support physicians in distinguishing benign and malignant nodules. The dataset consists of 20 benign or malignant biopsy sample...
ORGANISM(S): Homo sapiens 
2026-04-15 | E-MTAB-16876 | biostudies-arrayexpress
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