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UnknowneQTL mapping identifies insertion- and deletion-specific eQTLs in multiple tissues.
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S-EPMC4929061 | biostudies-literature
TranscriptomicsMRCA expression
We have created a global map of the effects of polymorphism on gene expression in 400 children from families recruited through a proband with asthma. We genotyped 408,273 SNPs and identified expression quantitative trait loci from measurements of 54,675 transcripts representing 20,599 genes in Epste...
ORGANISM(S): Homo sapiens 
2013-01-09 | E-MTAB-1425 | biostudies-arrayexpress
TranscriptomicsMRCE expression
We have created a global map of the effects of polymorphism on gene expression in 550 children from families recruited through a proband with atopic dermatitis. We genotyped >300,000 SNPs and identified expression quantitative trait loci from measurements of 16,487 probes representing 15,576 genes i...
ORGANISM(S): Homo sapiens 
2013-01-09 | E-MTAB-1428 | biostudies-arrayexpress
GenomicsCharacterization of Functional Methylomes by Next-Generation Methylation Capture Sequencing
Comprehensive analysis of the human adipose epigenome by transcriptome, open chromatin and methylome sequencing studies.
ORGANISM(S): Homo sapiens 
2015-05-01 | E-MTAB-3181 | biostudies-arrayexpress
GenomicsNational Cancer Institute Genome-Wide Association Study of Renal Cell Carcinoma

The National Cancer Institute (NCI) genome-wide association study (GWAS) of renal cell carcinoma (RCC) was conducted to investigate common genetic variants associated with RCC risk. The GWAS includes 1,453 RCC cases and 3,531 controls of European background from 4 studies (3 cohort, 1 case-con...

phs000351.v1.p1 | EGA
TranscriptomicsIdentification of cis-eQTLs in six immune cell types CD4, CD8, CD14,CD15, CD19, PLA and ileal, colonic and rectal biopsies in 323 healthy European individuals (CEDAR cohort).
Transcriptome in 6 immune cell types and 3 colonic biopsis from 323 individuals in order to perform cis-eQTL analysis. Identification of regulatory modules across genes and tissues on the basis of correlated SNPs in expression associated patterns (EAPs). Integration of cis-eQTLs regulatory modules w...
ORGANISM(S): Homo sapiens 
2018-04-28 | E-MTAB-6667 | biostudies-arrayexpress
TranscriptomicsGenetic variants regulating ORMDL3 expression are determinants of susceptibility to childhood asthma
Asthma is caused by a combination of poorly understood genetic and environmental factors. We found multiple markers on chromosome 17q21 to be strongly and reproducibly associated with childhood onset asthma in family and case-referent panels with a combined P < 10-12. In independent replication stu...
ORGANISM(S): Homo sapiens 
2007-11-09 | E-GEOD-8052 | biostudies-arrayexpress
TranscriptomicsTranscriptome of RCD-2 biopsies
About 5% of celiac disease (CeD) patients do not respond to a gluten-free diet and progress to refractory celiac disease (RCD), a severe progression that is characterized by infiltration of intraepithelial T-lymphocytes (IELs). RCD type II (RCDII) patients show clonal expansions of IELs that result ...
ORGANISM(S): Homo sapiens 
2016-12-05 | E-MTAB-4613 | biostudies-arrayexpress
GenomicsGenomic binding of Pol III transcription machinery and relationship with TFIIS distribution in mouse embryonic stem cells
RNA polymerase (RNA Pol) III synthesizes the tRNAs, the 5S ribosomal RNA and a small number of untranslated RNAs. In vitro, it also transcribes short interspersed nuclear elements (SINEs). We investigated the distribution of RNA Pol III and its associated transcription factors on the genome of mouse...
ORGANISM(S): Mus musculus 
2011-09-16 | E-MTAB-767 | biostudies-arrayexpress
TranscriptomicsGenotyping by array of anaplastic oligodendroglioma
A Cartes d'Identite des Tumeurs (CIT) project from the french Ligue Nationale Contre le Cancer (http://cit.ligue-cancer.net: Anaplastic oligodendrogliomas (AOs) are rare primary brain tumors which are generally incurable with few treatment targets identified. Most oligodendrogliomas have chromosome ...
ORGANISM(S): Homo sapiens 
2015-07-23 | E-MTAB-3457 | biostudies-arrayexpress
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