Marques A A - OmicsDI

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Unknown (4922)
Proteomics (120)
Transcriptomics (90)
Genomics (35)
Metabolomics (14)
Models (1)

Organisms

Homo sapiens (80)
Mus musculus (40)
Pan troglodytes (6)
Saccharomyces cerevisiae (6)
Rattus norvegicus (5)
Drosophila melanogaster (4)
Arabidopsis thaliana (4)
Gorilla gorilla (3)
Trypanosoma brucei (3)
Macaca mulatta (2)
Xylella fastidiosa (2)
Canis lupus familiaris (2)
Danio rerio (2)
Sparus aurata (2)
Caenorhabditis elegans (2)
Coffea arabica (2)
Coffea canephora (2)
Homo (2)
Solanum lycopersicum (2)
Staphylococcus aureus (2)
Sus scrofa domesticus (2)
Lathyrus sativus (1)
Pongo abelii (1)
Gorilla gorilla gorilla (1)
Hylobates lar (1)
Callithrix jacchus (1)
Monodelphis domestica (1)
Ornithorhynchus anatinus (1)
Pan paniscus (1)
Gallus gallus (1)

Organisms

Vipera latastei (3)
Gypaetus barbatus (3)
Lemur catta (3)
Arabidopsis thaliana (2)
Homo sapiens (2)
Clamator glandarius (1)
Vipera seoanei (1)
Eucalyptus tereticornis (1)
Sparus aurata (1)
Shigella sonnei (1)
human nasopharyngeal metagenome (1)
Klebsiella pneumoniae subsp. pneumoniae (1)
Eucalyptus globulus (1)
Serratia marcescens (1)

Repository

pride (114)
biostudies-arrayexpress (89)
ENA (33)
MetaboLights (13)
MassIVE (5)
geo (3)
Cell Collective (1)
GNPS (1)
PanoramaPublic (1)

Tissue

Cell culture (19)
Heart (10)
Stem cell (6)
Tooth enamel (6)
Brain (4)
Colon (4)
Liver (4)
Epithelial cell (3)
Leaf (3)
Macrophage (3)
Permanent cell line cell (3)
Plant cell (3)
Prostate gland (3)
Whole body (3)
Blood plasma (2)
Breast cancer cell line (2)
Dentin (2)
Fibroblast (2)
Prostate cancer cell line (2)
Adipocyte (1)
Adult stem cell (1)
Alveolar sac (1)
Basidiospore (1)
Blood (1)
Blood cell (1)
Blood serum (1)
Breast (1)
Cerebrospinal fluid (1)
Culture fluid (1)
Diaphragm (1)

Disease

Breast cancer (5)
Prostate cancer (5)
COVID-19 (2)
Colon cancer (2)
Malignant neoplasm of ovary (2)
Acute leukemia (1)
Alveolar rhabdomyosarcoma (1)
Alzheimer's disease (1)
Aortic valve stenosis (1)
Brain cancer (1)
Brain glioma (1)
Cardiovascular system disease (1)
Colorectal cancer (1)
Coronary artery disease (1)
Crohn's disease (1)
Diabetes (1)
Diamond-Blackfan anemia (1)
Disease free (1)
Gastric adenocarcinoma (1)
Inflammatory and toxic neuropathy (1)
Lung carcinoma (1)
Malaria (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Myocardial ischemia (1)
Paracoccidioidomycosis (1)
Parkinson's disease (1)
Parkinsonism (1)
Primary sclerosing cholangitis (1)
Retinopathy (1)
Trypanosomiasis (1)

Technology Type

Mass Spectrometry (114)
Shotgun proteomics (66)
Bottom-up proteomics (26)
Data-dependent acquisition (17)
Mass spectrometry (11)
Affinity purification coupled with mass spectrometry proteomics (8)
SWATH MS (6)
Gel-based experiment (5)
HDMSE (3)
Mass spectrometry assay (2)
Data-independent acquisition (2)
All-ion fragmentation (1)
MSE (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 550 (13)
Liquid Chromatography MS - positive - reverse phase (7)
Illumina HiSeq 2000 (2)
MaXis (2)
Liquid Chromatography MS - negative - reverse phase (2)
Illumina Genome Analyzer II (1)
Scanning hardware (1)
DNBSEQ-G400 (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
LTQ FT (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion (1)
Q-Exactive (Thermo Fisher) (1)
Capillary electrophoresis MS - negative (1)
Capillary electrophoresis MS - positive (1)
Direct infusion MS - positive (1)
Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)
Q Exactive (1)

Publication Date

2021 (24)
2026 (21)
2022 (19)
2025 (18)
2023 (18)
2014 (15)
2024 (13)
2015 (12)
2010 (12)
2011 (11)
2018 (11)
2020 (9)
2013 (9)
2019 (8)
2012 (7)
2016 (6)
2017 (3)
2007 (3)
2009 (2)
2008 (2)
2006 (2)

CHEBI ID

CHEBI:64563 (4)
CHEBI:16010 (3)
CHEBI:16027 (3)
CHEBI:16359 (3)
CHEBI:16414 (3)
CHEBI:17750 (3)
CHEBI:18012 (3)
CHEBI:27432 (3)
CHEBI:28865 (3)
CHEBI:30769 (3)
CHEBI:32816 (3)
CHEBI:35038 (3)
CHEBI:131440 (2)
CHEBI:132579 (2)
CHEBI:132580 (2)
CHEBI:134270 (2)
CHEBI:134428 (2)
CHEBI:139138 (2)
CHEBI:143243 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15354 (2)
CHEBI:15428 (2)
CHEBI:15724 (2)
CHEBI:15741 (2)
CHEBI:15846 (2)
CHEBI:15891 (2)
CHEBI:15978 (2)
CHEBI:16108 (2)
CHEBI:16119 (2)

Metabolite Name

Cholic acid (3)
Succinate (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
AMP (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Fumarate (2)
L-Valine (2)
Lyso-PC(16:0) (2)
Methionine (2)
Monoolein (2)
NAD+ (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Pyruvate (2)
Spermidine (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(1-Propenylthio)propyl propyl disulfide (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Amino-propan-2-ol (1)
1-Aminocyclohexanecarboxylic acid (1)

First Public Date

2025 (6)
2022 (5)
2014 (5)
2026 (4)
2023 (3)
2019 (3)
2013 (3)
2024 (2)
2018 (1)
2015 (1)

Classification

bacteria (3)

Modification

-17.026549 (1)
15.994915 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
42.010565 (1)
47.036105 (1)
58.005479 (1)

Study type

Transcription profiling by array (45)
RNA-seq of coding RNA (14)
Comparative genomic hybridization by array (7)
RNA-seq of coding RNA from single cells (6)
Animal - Single-cell sequencing (5)
ChIP-seq (2)
MicroRNA profiling by array (2)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Cell line - One-color microarray (1)
Transcription profiling by RT-PCR (1)
Other (1)

Release Date

2023 (589)
2022 (587)
2025 (586)
2021 (566)
2024 (471)
2020 (426)
2019 (304)
2018 (280)
2017 (252)
2016 (203)
2015 (141)
2014 (140)
2026 (101)
2013 (94)
2012 (66)
2010 (54)
2011 (41)
2009 (34)
2008 (25)
2007 (16)
2006 (9)
2003 (7)
2005 (6)
2004 (6)
2002 (2)
1998 (2)
1989 (2)
2001 (1)

Lab affiliation

Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (8)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (4)
Biochemistry and Molecular Biology, The Institute for Medical Research Israel-Canada (IMRIC). School of Medicine. The Hebrew University of Jerusalem, Israel. (2)
Center for Neuroscience and Cell Biology (2)
Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid. (2)
ITQB-NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. Da República, 2780-157 Oeiras, Portugal;iBET, Instituto de Biologia Experimental e Tecnológica, Apartado 12, 2780-901, Oeiras , Portugal (2)
1. Laboratorio de Enfermedades Parasitarias, Facultad de Ciencias Veterinarias, Universidad del Zulia, Maracaibo, Venezuela 2. Department of Biomedical Sciences, School of Medicine, University of Minnesota Duluth. 1035 University Drive, Duluth, MN, 55812 USA (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Bavarian Center for Biomolecular Mass Spectrometry at Klinikum Rechts der Isar, TUM School of Medicine and Health, Technical University of Munich, Munich, Germany (1)
Biochemistry and molecular biology department, Universidade Federal de Goias, Brazil (1)
Biomolecular Mass Spectrometry and Proteomics (1)
CEO, IBET, Apartado 12, 2781-901 Oeiras, Portugal Director Animal Cell Technology Unit, ITQB-UNL Inv Associate Professor, FCT-UNL (1)
CNIC (1)
CNPEM (1)
Canary Center at Stanford for Cancer Early Detection Department of Radiology School of Medicine Stanford University (1)
Canary Center at Stanford for Cancer Early Detection Department of Radiology Stanford University (1)
Canary Center at Stanford for Cancer Early Detection Department of Radiology Stanford University School of Medicine (1)
Canary Center at Stanford for Cancer Early Detection Department of Radiology, Stanford School of Medicine Stanford University USA (1)
Center for Neuroscience and Cell Biology – University of Coimbra (1)
Centre for Regenerative Medicine, Institute for Regeneration and Repair, University of Edinburgh, Edinburgh EH16 4UU, United Kingdom. Cancer Research UK Edinburgh Centre, University of Edinburgh, Edinburgh EH4 2XR, United Kingdom. (1)
Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford, UK. Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford, UK. (1)
Centro Nacional de Investigaciones Cardiovasculares (CNIC) and CIBER de Enfermedades Cardiovasculares (CIBERCV), Madrid, Spain (1)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC) (1)
Coordenadora do laboratório de espectrometria de massas, LNBio, CNPEM, Brasil. (1)
Dana-Farber Cancer Institute (1)
Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas, Campinas, SP, Brazil (1)
Department of Biological Sciences, Federal University of Ouro Preto, Minas Gerais, Brazil (1)
Department of Biology University of York Heslington York YO10 5DD (1)
Department of Biology, University of Copenhagen, Denmark. (1)

Tags

xref:PubMed:33911273 (5)
pathogen:bacterium (3)
pathogen (3)
xref:PubMed:25730906 (1)
xref:PubMed:22285966 (1)
xref:EuropePMC:PMC8975718 (1)

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Systematics and diversification of Anindobothrium Marques, Brooks & Lasso, 2001 (Eucestoda: Rhinebothriidea).

Not available

S-EPMC5617167 | biostudies-literature

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial A - seaweed-dose response)

Testing the effect of blue mussel ensilage as a novel cost-efficient protein feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial A, an alternative marin...

2023-06-13 | MTBLS4381 | MetaboLights

Individual variability in space use near power lines by a long-lived territorial raptor.

Not available

S-EPMC8987490 | biostudies-literature

Overexpression of four and a half LIM domains protein 2 promotes epithelial-mesenchymal transition-like phenotype in fish pre-osteoblasts

Four and a half LIM domains protein 2 (FHL2) is a co-regulator of gene transcription relevant for many signalling pathways and physiological processes. In this work, the role of FHL2 in cell differentiation has been investigated during in vitro mineralization using a Sparus aurata pre-osteoblast cel...

ORGANISM(S): Sparus aurata

2013-01-03 | E-GEOD-32501 | biostudies-arrayexpress

tatA_vs_WT

Series of 4 repetitions of hybridization of treatment (tatA) and control (WT) each. Comparison of the Arabidopsis tata antisense line that is defective in the ion gradient dependent twin-arginine translocation (TAT) pathway for uptake from the stroma into, or passage through, the thylakoid membrane ...

ORGANISM(S): Arabidopsis thaliana

2010-06-21 | E-GEOD-1253 | biostudies-arrayexpress

Eco-innovative aquafeeds biofortified with Asparagopsis taxiformis to improve the resilience of farmed white seabream (Diplodus sargus) to marine heatwave events.

Not available

S-EPMC11328060 | biostudies-literature

A network analysis of global cephalopod trade.

Not available

S-EPMC8748611 | biostudies-literature

Saliva as a non-invasive specimen for COPD assessment.

Not available

S-EPMC8800366 | biostudies-literature

Changes in grassland management and linear infrastructures associated to the decline of an endangered bird population.