Marra M M - OmicsDI

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Unknown (868)
Genomics (63)
Transcriptomics (40)
Proteomics (14)
Metabolomics (1)

Organisms

Homo sapiens (98)
Mus musculus (10)
Drosophila melanogaster (2)
Populus trichocarpa x Populus deltoides (1)
Schmidtea mediterranea (1)
Arabidopsis thaliana (1)
Beta vulgaris (1)
Brassica oleracea (1)
Fragaria x ananassa (1)
Helicobacter pylori J99 (1)
Mycobacterium tuberculosis H37Rv (1)

Organisms

Homo sapiens (1)

Repository

EGA (57)
biostudies-arrayexpress (45)
pride (14)
MetaboLights (1)
ENA (1)

Tissue

Brain (3)
Leaf (3)
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Cell culture (1)
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T cell (1)

Disease

Breast cancer (2)
Normal (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
Tuberculosis (1)

Technology Type

Mass Spectrometry (14)
Shotgun proteomics (8)
Illumina Genome Analyzer II (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Illumina HiSeq 2500, Illumina HiSeq 2000 (2)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
Affymetrix 6.0, Illumina Genome Analyzer II (1)
Illumina Genome Analyzer, Illumina HiSeq 2000, Illumina MiSeq, Affymetrix_U133plus2- (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 2500, Illumina MiSeq (1)
Mass spectrometry (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2013 (9)
2011 (7)
2015 (6)
2012 (6)
2021 (6)
2008 (5)
2020 (4)
2006 (3)
2014 (2)
2010 (2)
2009 (2)
2025 (2)
2016 (1)
2004 (1)
2022 (1)
2026 (1)
2019 (1)
2018 (1)

CHEBI ID

CHEBI:10044 (1)
CHEBI:10055 (1)
CHEBI:10070 (1)
CHEBI:10072 (1)
CHEBI:10099 (1)
CHEBI:10101 (1)
CHEBI:101096 (1)
CHEBI:10110 (1)
CHEBI:10112 (1)
CHEBI:10116 (1)
CHEBI:10136 (1)
CHEBI:10137 (1)
CHEBI:101381 (1)
CHEBI:102130 (1)
CHEBI:102216 (1)
CHEBI:102265 (1)
CHEBI:102516 (1)
CHEBI:102524 (1)
CHEBI:10302 (1)
CHEBI:10304 (1)
CHEBI:10322 (1)
CHEBI:103855 (1)
CHEBI:10435 (1)
CHEBI:10444 (1)
CHEBI:10472 (1)
CHEBI:10561 (1)
CHEBI:105700 (1)
CHEBI:107 (1)
CHEBI:107636 (1)
CHEBI:107648 (1)

Metabolite Name

(+)-(1R,2R)-1,2-Diphenylethane-1,2-Diol (1)
(+)-(S)-Carvone (1)
(+)-15,16-Dihydroxyoctadecanoic Acid (1)
(+)-Cucurbic Acid (1)
(+)-Galeon (1)
(+)-Prosopinine (1)
(+)-Trans-C75 (1)
(+)-Warfarin (1)
(+-)-Carnegine (1)
(+/-)-17-Hdohe (1)
(+/-)-3-(Methylthio)Heptanal (1)
(-)-11-Hydroxy-9,10-Dihydrojasmonic Acid (1)
(-)-12-Hydroxy-9,10-Dihydrojasmonic Acid (1)
(-)-Betonicine (1)
(-)-Cassaic Acid (1)
(-)-Ceriferol 1 (1)
(-)-Cladielline (1)
(-)-Dilophol (1)
(-)-Epinephrine (1)
(-)-Illudin M (1)
(-)-Nopol (1)
(-)-Pellotine (1)
(-)-Quebrachamine (1)
(-)-Trans-3,4-Dihydro-4,8-Dihydroxy-3-Methyl-1H-2-Benzopyran-1-One (1)
(-)-Trans-C75 (1)
(-)-Trans-Carveol (1)
(-)-Trans-Carveol Glucoside (1)
(1(10)E,4A,5E)-1(10),5-Germacradiene-12-Acetoxy-4,11-Diol (1)
(10Betah,11Xi)-11-Hydroxy-13-Nor-6-Eremophilen-8-One (1)
(10S)-Juvenile Hormone Iii Diol (1)

First Public Date

2014 (1)

Study type

Transcription profiling by array (19)
Transcription profiling by SAGE (7)
ChIP-seq (4)
RNA-seq of coding RNA (4)
Genotyping by array (3)
Comparative genomic hybridization by array (3)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Human - High-throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (87)
2021 (86)
2020 (82)
2025 (79)
2023 (75)
2024 (72)
2018 (64)
2019 (47)
2017 (43)
2015 (38)
2012 (37)
2016 (34)
2014 (27)
2013 (26)
2011 (26)
2010 (17)
2026 (15)
2008 (11)
2009 (10)
2006 (9)
2004 (8)
2007 (6)
2005 (5)
2003 (3)
2002 (3)
2001 (2)
1998 (1)

Lab affiliation

European Institute of Oncology (2)
Proteomics, Metabolomics and Mass Spectrometry Laboratory,ISPAAM, National Research Council, P.le E. Fermi 1, 80055 Portici, Italy (2)
Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada (1)
Experimental Systems Immunology Laboratory, Max-Planck Institute of Biochemistry, Martinsried, Germany. (1)
Experimental Systems Immunology, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Fondazione Pisana per la Scienza (1)
GHI EPFL Switzerland (1)
Head of the Molecular Biology and Biochemistry Laboratory EMBL Hamburg Notkestrasse 85, 22607 Hamburg, Germany (1)
Institute for the Animal Production System in the Mediterranean Environment (ISPAAM), National Research Council, Naples ITALY (1)
The Institute of Cancer Research (1)
c. University of Tübingen, Department of Immunology, Institute of Cell Biology, Auf der Morgenstelle 15, Tübingen 72076, Germany (1)
stituto per il Sistema Produzione Animale in Ambiente Mediterraneo (ISPAAM) �� Consiglio Nazionale delle Ricerche (CNR) (1)

Tags

xref:PubMed:16909388 (1)

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Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

We developed a method, ChIP-sequencing (ChIP-seq), combining chromatin immunoprecipitation (ChIP) and massively parallel sequencing to identify mammalian DNA sequences bound by transcription factors in vivo. We used ChIP-seq to map STAT1 targets in interferon stimulated and unstimulated human HeLa S...

ORGANISM(S): Homo sapiens

2009-03-23 | E-GEOD-15353 | biostudies-arrayexpress

Oncostatin M is overexpressed in NASH-related hepatocellular carcinoma and promotes cancer cell invasiveness and angiogenesis.

Not available

S-EPMC9315146 | biostudies-literature

A SNF2 protein targets variable copy number repeats and thereby influences allele-specific expression

ATRX is an X-linked gene of the SWI/SNF family whose role in vivo is currently unknown. Mutations in ATRX cause syndromal mental retardation. ATRX binds to tandem repeat (TR) sequences both in heterochromatin (e.g. telomeres) and euchromatin. Genes associated with these TRs can be dysregulated when ...

ORGANISM(S): Homo sapiens

2010-11-02 | E-GEOD-22162 | biostudies-arrayexpress

SARS-CoV-2 SPIKE PROTEIN: an optimal immunological target for vaccines.

Not available

S-EPMC7268185 | biostudies-literature

Evaluation of the prognostic value of liver stiffness in patients with hepatitis C virus treated with triple or dual antiviral therapy: A prospective pilot study.

Not available

S-EPMC4356922 | biostudies-literature

Mycobacterium tuberculosis protein production pipeline

Purpose: Tuberculosis is still a major threat to global health. New tools and strategies to produce disease-related proteins are quintessential for the development of novel vaccines and diagnostic markers. Experimental design: To obtain recombinant proteins from Mycobacterium tuberculosis (Mtb) for...

ORGANISM(S): Mycobacterium tuberculosis H37Rv

2018-06-27 | PXD004133 | Pride