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TranscriptomicsTranscription profiling of fission yeast as telomeres shorten in trt1- strains, and to compare survivors with linear and circular chromosomes
Time course experiment to watch RNA expression profiles as telomeres shorten in trt1- strains, and to compare survivors with linear and circular chromosomes.
ORGANISM(S): Schizosaccharomyces pombe 
2005-03-01 | E-MEXP-201 | biostudies-arrayexpress
TranscriptomicsLoss of Karma transposon methylation underlies oil palm somaclonal mantling
The oil palm fruit abnormality, mantled, is a somaclonal variant arising from tissue culture that drastically reduces yield, and has largely halted efforts to clone elite hybrids for breeding and oil production. Widely regarded as epigenetic, mantling had defied explanation, and has become an icon ...
ORGANISM(S): Elaeis guineensis 
2015-09-09 | E-GEOD-68410 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis wild-type, ago1-10, ago1-11, and dcl1-9 ec. Landsberg erecta seedling at 9, 21, and 35 days after germination reveals miRNA-Targeted and siRNA-Mediated mRNA Degradation Regulated by Argonaute, Dicer and RdRP
Microarray expression profiles of wild-type, ago1-10, ago1-11, and dcl1-9 Arabidopsis thaliana ec. Landsberg erecta seedling at 9, 21, and 35 days after germination. Experiment Overall Design: Reference design, wild-type vs mutants, multiple biological replicates
ORGANISM(S): Arabidopsis thaliana 
2008-06-13 | E-GEOD-4684 | biostudies-arrayexpress
TranscriptomicsArabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state
DNA replication programs have been studied extensively in yeast and animal systems, where they have been shown to correlate with gene expression and certain epigenetic modifications. Despite the conservation of core DNA replication proteins, little is known about replication programs in plants. We u...
ORGANISM(S): Arabidopsis thaliana 
2011-07-06 | E-GEOD-30433 | biostudies-arrayexpress
TranscriptomicsGlobal Functional Targets of the Histone Methyltransferase SDG8 Uncover a Role for Histone Modification in Energy Metabolism
Histone methylation modulates gene expression in response to external and internal cues. We uncovered a non-redundant role for the Arabidopsis histone methyltransferase, SDG8, which provides a unique opportunity to study the global function of a specific histone methyltransferase within in a multice...
ORGANISM(S): Arabidopsis thaliana 
2015-03-01 | E-GEOD-62435 | biostudies-arrayexpress
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