Martin K K - OmicsDI

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Unknown (10626)
Transcriptomics (668)
Proteomics (433)
Genomics (371)
Metabolomics (120)
Models (115)
Other (3)
Genomic (1)
Multiomics (1)

Organisms

Homo sapiens (788)
Mus musculus (176)
Arabidopsis thaliana (31)
Rattus norvegicus (19)
Drosophila melanogaster (15)
Schizosaccharomyces pombe (12)
Escherichia coli (10)
Saccharomyces cerevisiae (7)
Populus x canadensis (6)
Listeria monocytogenes (4)
Streptococcus pneumoniae (4)
Salmo salar (4)
Caenorhabditis elegans (4)
Brassica rapa (3)
Mycobacterium tuberculosis (3)
Bos taurus (3)
Triticum aestivum (3)
Escherichia coli str. K-12 substr. MG1655 (3)
Sus scrofa (3)
Danio rerio (3)
Listeria monocytogenes 10403S (2)
Helianthus annuus (2)
Aspergillus niger (2)
Zymomonas mobilis (2)
Streptococcus thermophilus (2)
Macaca mulatta (2)
Medicago truncatula (2)
Staphylococcus epidermidis ATCC 12228 (1)
Saccharomyces cerevisiae S288C (1)
Mammalia (1)

Organisms

Homo sapiens (10)
Mus musculus (1)

Repository

biostudies-arrayexpress (722)
EGA (305)
pride (270)
BioModels (114)
MetaboLights (86)
PeptideAtlas (71)
MassIVE (41)
GNPS (34)
PAXDB (34)
ENA (13)
PanoramaPublic (9)
iProX (4)
GPMDB (3)
jPOST (3)
Cell Collective (1)
dbGaP (1)
geo (1)

Tissue

Cell culture (51)
Others (26)
Brain (17)
Epithelial cell (17)
Liver (13)
Lung (12)
Permanent cell line cell (9)
Male Reproductive System (8)
Digestive System (8)
Female Reproductive System (7)
Kidney (7)
Colon (7)
Venom (6)
Blood plasma (6)
HeLa cell (6)
Hepatocyte (6)
Bone marrow (5)
Blood (5)
Cerebrospinal fluid (4)
Skin (4)
Cell suspension culture (4)
Stem cell (4)
Primary cell (4)
Spleen (3)
Liver (3)
Lung (1)
Pancreas (1)
Brain (1)
Adrenal Gland (1)
Kidney (1)

Disease

Colon cancer (8)
Type 2 diabetes mellitus (7)
Normal (6)
Breast cancer (5)
Acute leukemia (5)
Malignant neoplasm of ovary (4)
Disease free (4)
Melanoma (3)
Not Available (3)
Diabetes mellitus (2)
Mammary tumor (2)
Osteosarcoma (2)
Neuroblastoma (2)
Hodgkin's lymphoma (1)
Mature T-cell and NK-cell lymphoma (1)
Non tumoral reference sample (1)
Non-Hodgkin lymphoma (1)
Extranodal NK/T-Cell Lymphoma derived cell line (1)
Uninfected (1)
Uncomplicated gonorrhoea (1)
Schizophrenia (1)
Myelolipoma (1)
Marsh 3 (1)
Ductal breast cancer (1)
Bladder tumour (1)
Pancreatic tumor (1)
Follicular thyroid adenoma (1)
Papillary thyroid carcinoma (1)
Glioblastoma (1)
Nodal peripheral T-cell Lymphoma (1)

Technology Type

Mass Spectrometry (270)
Shotgun proteomics (170)
Mass spectrometry (75)
Bottom-up proteomics (39)
Data-dependent acquisition (34)
Illumina HiSeq 2000 (9)
NMR spectroscopy (9)
Illumina 15K (8)
Mass spectrometry assay (5)
ILLUMINA, Illumina HiSeq 2000 (3)
Illumina MiSeq (3)
Illumina HiSeq 2500, Illumina HiSeq 2000 (2)
Illumina Genome Analyzer II (2)
Illumina CytoSNP, Illumina HumanOmni2.5, ILLUMINA, Illumina 450k, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
NextSeq 550, ILLUMINA (1)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA (1)
Illumina Infinium HumanMethylation450 BeadChips (1)
Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0- (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
ISelect Beadchip (1)
Illumina HumanCNV370, Illumina HumanHap 300 v2 Duo, Taqman and sequencing, Illumina Human660W-Quad (1)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Illumina HumanHap 550K, Illumina HumanHap300-Duo (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, ILLUMINA (1)

Instrument Platform

6540 Q-TOF LC/MS (31)
NextSeq 500 (15)
Illumina NovaSeq 6000 (14)
Illumina HiSeq 2500 (10)
Illumina HiSeq 2000 (10)
NextSeq 550 (8)
Affymetrix GeneChip Scanner 3000 7G (7)
Illumina NovaSeq X (6)
Illumina MiSeq (5)
ScanArray Express HT [PerkinElmer] (4)
Illumina HiSeq 4000 (4)
Affymetrix GeneChip(R) HT Scanner (3)
Sony SH800 (2)
Axon- GenePix4000B (2)
Illumina Genome Analyzer II (2)
BGISEQ-500 (2)
NanoString nCounter (1)
BD Influx Cell Sorter (1)
Eppendorf EpMotion 5073m pipetting robot (1)
Thermo Fisher (1)
Agilent G2565BA Microarray Scanner System (Agilent Technologies, Santa Clara, CA) (1)
Tecan HS4800 hybridization station (Tecan, Vienna, Austria) (1)
VersArray ChipReader [Bio-Rad Laboratories] (1)
Genepix 4000A array scanner (1)
Advalytix Slide Booster (1)
Covaris E220evolution (1)
ScanArray Express HT (1)
GenePix 4000B [Axon Instruments] (1)
Affymetrix Fluidics Station 400 (1)
NextSeq 2000 (1)

Publication Date

2014 (138)
2013 (99)
2015 (96)
2010 (91)
2012 (89)
2005 (86)
2021 (81)
2011 (73)
2022 (67)
2019 (64)
2024 (56)
2016 (54)
2017 (45)
2026 (43)
2020 (43)
2025 (42)
2018 (41)
2023 (38)
2008 (38)
2009 (34)
2007 (15)
2006 (13)
2004 (3)
2003 (1)

UNIPROT ID/AC

Q9BQG2 (66)
B3KXN9 (66)
Q53HM1 (66)
Q86SK9 (66)
E9KL42 (66)
Q3I5F7 (66)
P33897 (66)
Q99884 (66)
A8MU28 (66)
P35219 (66)
Q5FC00 (66)
Q15274 (66)
Q9NX14 (66)
Q9Y345 (66)
Q86YT5 (66)
Q53H96 (66)
Q9NWU1 (66)
Q96C36 (66)
Q9NRX3 (66)
O75610 (66)
Q6UWQ5 (66)
Q96KJ9 (66)
Q9UEF7 (66)
Q8TF08 (66)
Q7Z4L0 (66)
Q9H0N5 (66)
Q6YFQ2 (66)
Q6FGA0 (66)
Q53YB7 (66)
Q53XN1 (66)

ENSEMBL ID

ENSG00000170477 (53)
ENSG00000229353 (44)
ENSG00000147251 (22)
ENSG00000247315 (10)
ENSG00000176092 (3)
ENSG00000204131 (3)
ENSMUSG00000032652 (1)
ENSMUSG00000090272 (1)
ENSMUSP00000141637 (1)
ENSMUSG00000021039 (1)
ENSMUSP00000141097 (1)

CHEBI ID

CHEBI:17568 (114)
CHEBI:16865 (113)
CHEBI:15354 (112)
CHEBI:17750 (111)
CHEBI:17203 (111)
CHEBI:17115 (111)
CHEBI:16828 (109)
CHEBI:15971 (109)
CHEBI:17196 (108)
CHEBI:15963 (104)
CHEBI:16523 (97)
CHEBI:29103 (97)
CHEBI:27931 (97)
CHEBI:17432 (97)
CHEBI:17399 (97)
CHEBI:15570 (97)
CHEBI:4047 (97)
CHEBI:15710 (97)
CHEBI:11851 (97)
CHEBI:28528 (97)
CHEBI:28325 (97)
CHEBI:17549 (97)
CHEBI:28706 (97)
CHEBI:18304 (97)
CHEBI:18191 (97)
CHEBI:16842 (97)
CHEBI:16189 (97)
CHEBI:16311 (97)
CHEBI:17625 (97)
CHEBI:17369 (97)

Metabolite Name

Taurine (11)
Glycine (10)
Glycine (9)
Adenosine (9)
Leucine (8)
Taurine (8)
Creatinine (8)
Phenylalanine (8)
Succinic acid (7)
Glutamine (7)
Lysine (7)
Phenylalanine (7)
Ornithine (7)
Methionine (7)
Putrescine (7)
L-Proline (7)
Tyrosine (7)
L-Valine (7)
Glutamine (7)
Creatine (7)
Adenine (7)
L-Phenylalanine (7)
Linoleic acid (7)
L-Serine (7)
Uridine (7)
Histidine (6)
Creatinine (6)
Glycerol (6)
Valine (6)
Glucose (6)

First Public Date

2015 (4)
2020 (2)
2024 (1)
2023 (1)
2018 (1)
2017 (1)
2016 (1)
2014 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (17)
Constraint-based model (1)

Lab affiliation

Department of Biotechnology, TU Delft, The Netherlands (7)
Assistant Professor, Evolutionary Venomics Lab, Center for Ecological Sciences, Indian Institute of Science, Bangalore, India (5)
Department of Biotechnology, Delft University of Technology, The Netherlands. (5)
Functional Proteomics, ICR (4)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchatel, Switzerland (3)
Medizinisches Proteom-Center, Ruhr-Universität Bochum, Bochum, Germany (3)
Mendel University in Brno (3)
Diabetes and Circadian Rhythms Department, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland (3)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (3)
Medizinisches Proteom-Center Ruhr-Universität Bochum Zentrum für klinische Forschung (ZKF) Raum 1.055 Universitätsstraße 150 44801 Bochum Germany (2)
Department of Plant Physiology, University of Rostock, Germany (2)
Department of Immunology, Interfaculty Institute for Cell Biology, Eberhard Karls University Tübingen (2)
Head of Lab of Cancer Signaling GIGA-institute Université de Liège CHU, B34, Tour GIGA (+2) B-4000 Liège (2)
Philip Morris R&D, Neuchatel, Switzerland (2)
Prof. Dr. Martin von Bergen Head of Department of Molecular Systems Biology Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 1211 Martin.vonbergen@ufz.de, http://www.ufz.de/index.php?de=40881 (2)
Department of Biotechnology, Applied Sciences, Delft University of Technology, The Netherlands (2)
WWU Muenster, Institute of Plant Biology and Biotechnology (2)
Dr. Jörn Dengjel Prof. for Biochemistry and Cell Biology Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 NeuchÃƒÂ¢tel, Switzerland (part of Philip Morris International group of companies) (2)
Department of Biochemistry and Molecular Biology School of Medicine, Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, OR 97239, USA (2)
Department of Biochemistry and Molecular Biology; and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, VIC 3010. Australia (2)
European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland (2)
Department of Biology, University of Konstanz, Germany (2)
Max Delbrück Center for Molecular Medicine in the Helmholtz Association (2)
Ruhr-Universität Bochum Medizinisches Proteom-Center Raum 2.250 Gesundheitscampus 4 44801 Bochum Germany (1)
IWE ZIK HALOmem, Martin Luther University Halle-Wittenberg, Halle, Germany (1)
Ruhr-Universität Bochum Medizinisches Proteom-Center ZKF 1.055 Universitätsstraße 150 44801 Bochum Germany (1)
Ruhr-Universität Bochum Medizinisches Proteom-Center Raum 1.055 Universitätsstraße 150 44801 Bochum Germany (1)
Assistant Professor and Group Leader, Indian institute of Science (IISc), Bangalore (1)

IsPrivate

False (114)

Model Flag

Non Kinetic (98)

Submitter Keywords

Not Peer Reviewed (1)

Modification

79.966331 (1)
42.010565 (1)
15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (430)
RNA-seq of coding RNA (71)
ChIP-seq (43)
Comparative genomic hybridization by array (35)
Methylation profiling by array (15)
RNA-seq of coding RNA from single cells (13)
ChIP-chip by tiling array (11)
Unknown experiment type (10)
RNA-seq of non coding RNA (10)
ChIP-chip by array (9)
Cell line - High-throughput sequencing (8)
Animal - One-color microarray (7)
Genotyping by array (7)
Other (6)
MicroRNA profiling by array (5)
Methylation profiling by high throughput sequencing (5)
Animal - High-throughput sequencing (4)
Transcription profiling by tiling array (4)
DNA-seq (4)
RNAi profiling by array (3)
Transcription profiling by SAGE (2)
Cell line - One-color microarray (2)
High-throughput sequencing (2)
Human - One-color microarray (2)
Transcription profiling by RT-PCR (2)
RNA-seq of total RNA (2)
Transcription profiling by array;comparative genomic hybridization by array (1)
MNase-seq (1)
RIP-chip by array (1)
MicroRNA profiling by high-throughput sequencing (1)

Release Date

2022 (1199)
2021 (1180)
2023 (1104)
2024 (1097)
2025 (1084)
2020 (799)
2019 (657)
2018 (636)
2017 (517)
2015 (475)
2016 (454)
2014 (378)
2013 (364)
2012 (330)
2011 (244)
2010 (219)
2026 (187)
2009 (135)
2008 (108)
2007 (51)
2006 (30)
2005 (23)
2004 (19)
2003 (18)
2002 (13)
2001 (10)
1999 (6)
1998 (4)
2000 (3)
1997 (2)

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Biglycan as a potential regulator of tumorgenicity and immunogenicity in K-RAS-transformed cells.

Not available

S-EPMC9067524 | biostudies-literature

Fink2008_VentricularActionPotential

This a model from the article: Contributions of HERG K+ current to repolarization of the human ventricular action potential. Fink M, Noble D, Virag L, Varro A, Giles WR. Prog Biophys Mol Biol 2008 Jan-Apr;96(1-3):357-76 17919688 , ...

2005-01-01 | MODEL1006230009 | BioModels

Xylem K⁺ loading modulates K⁺ and Cs⁺ absorption and distribution in Arabidopsis under K⁺-limited conditions.

Not available

S-EPMC10557132 | biostudies-literature

Binding of the heterogeneous ribonucleoprotein K (hnRNP K) to the Epstein-Barr virus nuclear antigen 2 (EBNA2) enhances viral LMP2A expression.

Not available

S-EPMC3411732 | biostudies-literature

Sirt1 protects from K-Ras-driven lung carcinogenesis.

Not available

S-EPMC6123659 | biostudies-literature

Elevated HERV-K Expression in Soft Tissue Sarcoma Is Associated with Worsened Relapse-Free Survival.

Not available

S-EPMC5816752 | biostudies-literature

Menin determines K-RAS proliferative outputs in endocrine cells.

Not available

S-EPMC4153699 | biostudies-literature

Structural Mimicry Drives HIV-1 Rev-Mediated HERV-K Expression.

Not available

S-EPMC7842262 | biostudies-literature

The transcriptomic response of E. coli to triclosan exposure

The gene expression profile of E. coli K-12 MG1655 grown in minimal medium treated with 0.12 mg/L of the biocide triclosan has been analysed using whole genome oligonucleotide microarrays. "Control" RNA was isolated from three independently grown 50ml MOPS minimal media cultures of E. coli K-12 MG16...

ORGANISM(S): Escherichia coli

2010-10-08 | E-GEOD-15059 | biostudies-arrayexpress

Attenuation of Na/K-ATPase Mediated Oxidant Amplification with pNaKtide Ameliorates Experimental Uremic Cardiomyopathy.

Not available

S-EPMC5048179 | biostudies-literature

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