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ProteomicsMetaomic study on the ecophysiological cascade underlaying seasonal N2O emissions
Nina Roothans et al.(2024) combined long-term, metagenomically resolved metaproteomics and ex situ kinetic characterizations to elucidate the ecophysiology of an N2O-emitting wastewater treatment plant community. The integration of these data enabled the identification of a cascade of environmental ...
ORGANISM(S): Microthrix Candidatus Accumulibacter phosphatis Nitrosomonas sp. Nitrospira sp. 
2025-02-21 | PXD051095 | Pride
Wastewater treatment plants Microbes Shotgun proteomics Metaproteomics 
TranscriptomicsEffect of heterotypic interaction between breast cancer cell line MDA-MB231 and CCL-171 fibroblast
These 12 arrays are the basis for Figure 1 of the "An interferon-response induced by tumor-stroma interaction in a subset of human breast cancers" manuscript. Figure 1: Effect of heterotypic interaction between breast cancer cell line MDA-MB231 and CCL-171 fibroblast. Biologically indepen...
ORGANISM(S): Homo sapiens 
2007-11-13 | E-GEOD-7263 | biostudies-arrayexpress
TranscriptomicsAn interferon-response induced by tumor-stroma interaction in a subset of human breast cancers
This SuperSeries is composed of the following subset Series: GSE7260: epithelial-mesenchymal interaction of the breast GSE7263: Effect of heterotypic interaction between breast cancer cell line MDA-MB231 and CCL-171 fibroblast Refer to individual Series
ORGANISM(S): Homo sapiens 
2007-11-13 | E-GEOD-7264 | biostudies-arrayexpress
Transcriptomicsepithelial-mesenchymal interaction of the breast
These 95 arrays are the basis for Figure 2 of our manuscript "An interferon-response induced by tumor-stroma interaction in a subset of human breast cancers". Abstract:Background Communication between different cell types is a cardinal feature of multi-cellular organisms and perturbations ...
ORGANISM(S): Homo sapiens 
2007-11-13 | E-GEOD-7260 | biostudies-arrayexpress
TranscriptomicsVitamin C induces Tet-dependent DNA demethylation in ES cells to promote a blastocyst-like methylome [Affymetrix]
DNA methylation is a heritable epigenetic modification involved in gene silencing, imprinting, and the suppression of retrotransposons. Global DNA demethylation occurs in the early embryo and the germline and may be mediated by Tet (ten-eleven-translocation) enzymes, which convert 5-methylcytosine (...
ORGANISM(S): Mus musculus 
2013-06-30 | E-GEOD-46319 | biostudies-arrayexpress
TranscriptomicsIGR_BLADDER_GE_STUDY_JA
Background: Although histology is the corner stone for decision analysis in bladder cancer, it still needs refinement and new tools to better identify tumours with the highest risk of progression or recurrence. Objective: We designed a prospective study to evaluate whether microarray analysis could ...
ORGANISM(S): Homo sapiens 
2013-08-13 | E-MTAB-993 | biostudies-arrayexpress
GenomicsVitamin C induces Tet-dependent DNA demethylation in ES cells to promote a blastocyst-like methylome
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Mus musculus 
2013-06-30 | E-GEOD-46403 | biostudies-arrayexpress
Transcriptomicsknockout-Transcriptomic analyses approach to identify genes associated with organ growth downstream TCTP in Arabidopsis
ra09-02_tctp - knockout - Identification of effector genes that act downstream of AtTCTP, using knockout ( tctp-2), RNAi expressing line (35S::RNAi-AtTCTP) and over expressing line (35S::AtTCTP) - transcriptome analysis in leaf of tctp-2 knock out versus wild type Keywords: gene knock out 2 dye-swa...
ORGANISM(S): Arabidopsis thaliana 
2011-03-17 | E-GEOD-19847 | biostudies-arrayexpress
Transcriptomicsdella-regulation in darkness versus light-DELLAs contribute to skotomorphogenesis
rs09-09_della-dark - della-regulation in darkness versus light - Identification of DELLA-dependent downstream targets in darkness - Aim was to determine downstream target of DELLA proteins involved in skotomorphogenesis. Wt, ga1-3, ga1-3_rga_gai_rgl1_rgl2_rgl3 global seeds were sterilized, sown on M...
ORGANISM(S): Arabidopsis thaliana 
2011-06-12 | E-GEOD-22681 | biostudies-arrayexpress
TranscriptomicsCharacterization of the SigB-PrfA regulatory network in Listeria monocytogenes
Listeria monocytogenes SigB and PrfA are pleiotropic regulators of stress response and virulence gene expression, which have been shown to co-regulate genes in L. monocytogenes. We performed whole genome transcriptional profiling in the presence of PrfA* and active SigB, to identify the overlaps be...
ORGANISM(S): Listeria monocytogenes 
2010-05-19 | E-GEOD-11347 | biostudies-arrayexpress
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