Martinez P P - OmicsDI

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Unknown (14071)
Transcriptomics (347)
Proteomics (174)
Genomics (39)
Metabolomics (25)
Models (7)
Genomic (5)
Other (1)

Organisms

Homo sapiens (204)
Mus musculus (75)
Arabidopsis thaliana (15)
Saccharomyces cerevisiae (13)
Rattus norvegicus (8)
Sus scrofa (6)
Heterocephalus glaber (4)
Medicago truncatula (3)
Drosophila melanogaster (3)
Citrus limonia (2)
Solanum lycopersicum (2)
Escherichia coli (2)
Danio rerio (2)
Rhinolophus ferrumequinum (1)
Methyloversatilis universalis FAM5 (1)
Citrus jambhiri (1)
Haloferax mediterranei (1)
Citrus medica (1)
Gorilla gorilla gorilla (1)
Scophthalmus maximus (1)
Mycobacterium leprae (1)
Lactococcus lactis subsp. lactis (1)
Lactococcus lactis (1)
Chlamydia trachomatis (1)
Streptococcus mutans (1)
Trichoderma reesei (1)
Capsicum annuum (1)
Aspergillus niger (1)
Platynereis dumerilii (1)
Vitis riparia x Vitis berlandieri (1)

Organisms

Citrus limonia (2)
Rhizobium sp. CCGE 510 (1)
Rhizobium sp. Pop5 (1)
Cuscuta campestris (1)
Pseudomonas putida KT2440 (1)

Repository

biostudies-arrayexpress (364)
pride (167)
MetaboLights (25)
EGA (12)
ENA (10)
BioModels (7)
dbGaP (5)
MassIVE (5)
geo (1)
GPMDB (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (28)
Epithelial cell (16)
Brain (12)
Cell line cell (7)
Liver (7)
Fibroblast (6)
Lung (6)
Plant cell (5)
Blood (4)
Blood plasma (4)
HEK-293 cell (4)
Kidney (4)
Cholangiocyte (3)
HeLa cell (3)
Heart (3)
Leaf (3)
Placenta (3)
Stem cell (3)
T cell (3)
T-47D cell (3)
UWB1.289 cell (3)
Cell suspension culture (2)
HepG2 cell (2)
Hepatocyte (2)
K-562 cell (2)
Lymph node (2)
MDA-MB-231 cell (2)
Macrophage (2)
Permanent cell line cell (2)
Pluripotent stem cell (2)

Disease

Colon cancer (10)
Parkinson's disease (6)
COVID-19 (5)
Normal (3)
Acute leukemia (3)
Polycystic liver disease (3)
Brain glioblastoma multiforme (2)
Cervix carcinoma (2)
Cholangiocarcinoma (2)
Infertility (2)
Alzheimer's disease (1)
Unspecified peripheral T-cell lymphoma (1)
Spindle cell tumor (1)
Pre-tumoral lesion in a mouse model of human adamantinomatous craniopharyngioma (ACP) (1)
Not Available (1)
Amyotrophic lateral sclerosis (1)
Breast cancer (1)
Cardiovascular system disease (1)
Chronic kidney disease (1)
Chronic myeloid leukemia (1)
Disease free (1)
Fascioliasis (1)
Fragile X syndrome (1)
Huntington Disease (1)
Influenza (1)
Lymphoma (1)
Malaria (1)
Myocardial ischemia (1)
Neuroblastoma (1)
Neurodevelopmental abnormality (1)

Technology Type

Mass Spectrometry (167)
Shotgun proteomics (99)
Bottom-up proteomics (27)
Affinity purification coupled with mass spectrometry proteomics (24)
Mass spectrometry (17)
SWATH MS (15)
Data-dependent acquisition (13)
Gel-based experiment (9)
NMR spectroscopy (6)
Top-down proteomics (6)
Mass spectrometry assay (4)
Data-independent acquisition (4)
All-ion fragmentation (3)
SRM/MRM (2)
Applied Biosystems 3100 automated sequencer-GeneMarker v.1.6 (Softgenetics) (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (16)
Liquid Chromatography MS - negative - reverse phase (8)
Illumina HiSeq 2500 (6)
Illumina HiSeq 2000 (5)
Illumina HiSeq 4000 (5)
Nuclear Magnetic Resonance (NMR) - (5)
Illumina MiSeq (3)
Q Exactive (3)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (3)
Liquid Chromatography MS - alternating - hilic (3)
Illumina NovaSeq X (2)
NextSeq 2000 (2)
NextSeq 500 (2)
Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 (1)
Thermo Fisher (1)
Python 3.10.12 environment (1)
PromethION (1)
C1 Single-Cell Auto Prep System, Fluidigm (1)
MoFlo XPD (Beckman Coulter, Fullerton, CA, USA) flow cytometer (1)
Agilent DNA Microarray Scanner G2565CA (1)
Illumina MouseWG-6 v2 Expression BeadChip (1)
G2565BA DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
None (1)
Ion Torrent Proton (1)
Instrument (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
Synapt G2 HDMS (1)

Publication Date

2012 (63)
2014 (47)
2010 (46)
2013 (42)
2025 (41)
2011 (39)
2015 (37)
2022 (33)
2019 (32)
2026 (28)
2016 (26)
2024 (23)
2023 (22)
2020 (19)
2021 (18)
2018 (16)
2009 (10)
2017 (9)
2008 (6)
2007 (4)
2005 (2)
2006 (1)
2004 (1)

UNIPROT ID/AC

Q7KYZ4 (1)
1433A_TOBAC (1)
1433B_TOBAC (1)
1433C_TOBAC (1)
1433D_TOBAC (1)
1433E_TOBAC (1)
1433F_TOBAC (1)
1433_TOBAC (1)
4CL1_TOBAC (1)
4CL2_TOBAC (1)
A0A024AXE8_TOBAC (1)
A0A059TCI1_TOBAC (1)
A0A059TCI3_TOBAC (1)
A0A067ZTA7_TOBAC (1)
A0A068JFR6_TOBAC (1)
A0A068LMB8_TOBAC (1)
A0A075EYP9_TOBAC (1)
A0A075EYQ1_TOBAC (1)
A0A075EYQ4_TOBAC (1)
A0A075EYQ6_TOBAC (1)
A0A075F1U0_TOBAC (1)
A0A075F1U5_TOBAC (1)
A0A075F1V2_TOBAC (1)
A0A075F2H1_TOBAC (1)
A0A075F2H4_TOBAC (1)
A0A075F933_TOBAC (1)
A0A075F9G5_TOBAC (1)
A0A075QPA9_TOBAC (1)
A0A076FNG8_TOBAC (1)
A0A076FNH2_TOBAC (1)

CHEBI ID

CHEBI:30769 (13)
CHEBI:32816 (11)
CHEBI:26271 (9)
CHEBI:15428 (9)
CHEBI:6650 (9)
CHEBI:27266 (9)
CHEBI:18012 (9)
CHEBI:28300 (8)
CHEBI:28044 (8)
CHEBI:27897 (8)
CHEBI:33508 (7)
CHEBI:25094 (7)
CHEBI:18186 (7)
CHEBI:17234 (7)
CHEBI:24898 (7)
CHEBI:25017 (7)
CHEBI:17754 (7)
CHEBI:15366 (7)
CHEBI:16199 (7)
CHEBI:24266 (6)
CHEBI:17992 (6)
CHEBI:26984 (6)
CHEBI:17822 (6)
CHEBI:15978 (6)
CHEBI:18237 (6)
CHEBI:22660 (6)
CHEBI:22653 (6)
CHEBI:16811 (6)
CHEBI:29864 (6)
CHEBI:35195 (1)

Metabolite Name

Pyruvic acid (7)
Citric acid (7)
Glycine (6)
Mannitol (6)
Urea (6)
L-Phenylalanine (6)
D-Glucose (5)
Valine (5)
Betaine (5)
L-Histidine (5)
Phenylalanine (5)
L-Glutamine (5)
Glucose (5)
Creatine (5)
L-Valine (5)
L-Leucine (5)
L-Tyrosine (5)
L-Lactic acid (4)
D-Galactose (4)
Leucine (4)
Glycerol (4)
L-Alanine (4)
Beta-alanine (4)
Succinic acid (4)
L-Threonine (4)
Pantothenic acid (4)
Choline (4)
Fumaric acid (4)
Glyceric acid (4)
Lysine (4)

IsPrivate

False (7)

First Public Date

2013 (3)
2014 (2)
2026 (1)
2023 (1)
2022 (1)
2020 (1)
2018 (1)

Modelling Approach

Ordinary differential equation model (7)

Study type

Transcription profiling by array (237)
RNA-seq of coding RNA (39)
Comparative genomic hybridization by array (21)
ChIP-seq (15)
Unknown experiment type (12)
RNA-seq of coding RNA from single cells (11)
Methylation profiling by array (6)
ChIP-chip by tiling array (3)
Genotyping by array (3)
High-throughput sequencing (2)
RNA-seq of non coding RNA (2)
Baseline (1)
RIP-chip by array (1)
Human - Methylation microarray (1)
Cell line - One-color microarray (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
ATAC-seq (1)
Other (1)
Single nucleus RNA sequencing (1)
DNA-seq (1)

Release Date

2022 (1809)
2021 (1712)
2025 (1680)
2023 (1676)
2024 (1461)
2020 (1196)
2019 (800)
2018 (654)
2017 (545)
2016 (494)
2015 (475)
2014 (426)
2026 (287)
2012 (286)
2013 (271)
2011 (211)
2010 (155)
2009 (95)
2008 (67)
2007 (33)
2006 (29)
2005 (20)
2004 (16)
2003 (16)
1999 (7)
1998 (7)
2000 (4)
2002 (3)

Lab affiliation

Cellzome (7)
Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany. (7)
Microbial Evolution Laboratory, Centro de Astrobiologia (CSIC-INTA), 28850 Torrejón de Ardoz, Madrid, Spain (5)
Systems Biology Ireland, University College Dublin (3)
Departament de Bioquímica i Biologia Molecular Universitat de Valencia (2)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse (2)
Professor, Department of Cellular and Molecular Pharmacology (2)
1 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands 2 Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
1INSERM, U1068, Cancer Research Center of Marseille, Institut Paoli-Calmettes, CNRS, UMR7258, and University Aix-Marseille, Marseille, France (1)
1Max Planck Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg1 D-14476, Potsdam-Golm, Germany. (1)
Associate Professor Magnetic Resonance Mass Spectrometry Perth, Western Australia, Australia (1)
Australian Proteome Analysis Facility, Macquarie University, NSW 2109, Australia (1)
Bavarian Center for Biomolecular Mass Spectrometry at Klinikum Rechts der Isar, TUM School of Medicine and Health, Technical University of Munich, Munich, Germany (1)
Bioanalytics department, Proteomics group, Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V., Dortmund, Germany (1)
Biochemistry and Molecular Biophysics Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA Children's Hospital of Philadelphia Research Institute, Philadelphia, PA 19104, USA. (1)
Biochemistry and Molecular Biophysics Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Children's Hospital of Philadelphia Research Institute, Philadelphia, PA 19104, USA. (1)
Biochemistry and Molecular Biophysics Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Department of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore. Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore. (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands; Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands; and Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore. (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands. (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands (1)
CIC bioGUNE Proteomics Service Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (1)
CRG/UPF, Barcelona, Spain (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Cell Signaling and Immunology (1)
Cell Signaling and Immunology School of Life Sciences University of Dundee (1)
Cell Signaling and Immunology, School of Life Science, University of Dundee, Dundee. United Kingdom (1)
Center for Genomic Regulation (CRG), University Pompeu Fabra (UPF) (1)
Center for Medical Biochemistry, Max Perutz Labs, Medical University of Vienna, Vienna BioCenter(VBC), Austria (1)

Tags

xref:PubMed:35861439 (1)
xref:PubMed:23105056 (1)
xref:PubMed:33292867 (1)
xref:PubMed:20378774 (1)

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Martinez-Guimera2017 - Generic negative feedback circuit (Model 4)

Martinez-Guimera2017 - Generic negative feedback circuit (Model 4) This model is described in the article: 'Molecular habituation' as a potential mechanism of gradual homeostatic loss with age. Martinez Guimera A, Welsh CM, Proctor CJ, McArdle A, Shanley DP. Mech. Ageing Dev. ...

MODEL1710260003 | BioModels

Martinez-Guimera2017 - Generic negative feedforward circuit (Model 5)

Martinez-Guimera2017 - Generic negative feedforward circuit (Model 5) This model is described in the article: 'Molecular habituation' as a potential mechanism of gradual homeostatic loss with age. Martinez Guimera A, Welsh CM, Proctor CJ, McArdle A, Shanley DP. Mech. Ageing De...

MODEL1710260004 | BioModels

Martinez-Guimera2017 - Generic redox signalling model without negative regulation (Model 1)

Martinez-Guimera2017 - Generic redox signalling model without negative regulation (Model 1) This model is described in the article: 'Molecular habituation' as a potential mechanism of gradual homeostatic loss with age. Martinez Guimera A, Welsh CM, Proctor CJ, McArdle A, Shanley...

MODEL1710260000 | BioModels

Martinez-Guimera2017 - Generic redox signalling model with negative feedback regulation (Model 2)

Martinez-Guimera2017 - Generic redox signalling model with negative feedback regulation (Model 2) This model is described in the article: 'Molecular habituation' as a potential mechanism of gradual homeostatic loss with age. Martinez Guimera A, Welsh CM, Proctor CJ, McArdle A, S...

MODEL1710260001 | BioModels

Martinez-Guimera2017 - Generic redox signalling model with negative feedforward regulation (Model 3)

Martinez-Guimera2017 - Generic redox signalling model with negative feedforward regulation (Model 3) This model is described in the article: 'Molecular habituation' as a potential mechanism of gradual homeostatic loss with age. Martinez Guimera A, Welsh CM, Proctor CJ, McArdle A...

MODEL1710260002 | BioModels

Data for modeling the height and diameter of Pinus merkusii and P. michoacana in Zambia.

Not available

S-EPMC8511804 | biostudies-literature

Sliding of HIV-1 reverse transcriptase over DNA creates a transient P pocket - targeting P-pocket by fragment screening.

Not available

S-EPMC8654897 | biostudies-literature

Martinez-Guimera2017 - Generic redox signalling model with negative feedback regulation (Model 2)

2020-03-20 | MODEL2001080001 | BioModels

Tissue remodelling and increased DNA damage in patients with incompetent valves in chronic venous insufficiency.

Not available

S-EPMC8358866 | biostudies-literature