Sort   by:  
 Page size 
TranscriptomicsRNA from 3 d and 2 d old embryos of mibta52b, mibm132 and mibtfi91, and RNA from 3 d, 2d and 1 d old embryos of mibta52b
The Notch signaling is an evolutionarily conserved signal transduction cascade that plays essential roles in a variety of developmental processes. In this study, we examined the mib mutants for defects in pancreas development using in situ hybridization and GFP expression analysis of pancreas-specif...
ORGANISM(S): Danio rerio 
2010-06-25 | E-GEOD-8522 | biostudies-arrayexpress
TranscriptomicsHigh-throughput sequencing of mRNA from oocyte, 1 cell, 16/32 cells, 128/256 cells, 3.5hpf and 5.3hpf zebrafish embryos (Wild type; AB line)
mRNA seq based approach to determine the transcriptome dynamics during early development To study the mechanisms regulating this developmental event in zebrafish, we applied RNA deep sequencing technology and generated comprehensive transcriptome profiles of 6 developmental stages from oocyte to ear...
ORGANISM(S): Danio rerio 
2011-03-31 | E-GEOD-22830 | biostudies-arrayexpress
TranscriptomicsZebrafish (Danio rerio) 72hpf, WT control vs. MO-Prpf31 injected
Transcriptional profiling performed from total eye RNA extracts of wildtype control fishes versus Prpf31 morpholino injected larvae (at ~72hpf) two-condition experiment: wildtype zebrafish versus MO-Prpf31 injected zebrafish eye RNA; 6 replicates each (extraction from 6 pools (~200 eyes each) of con...
ORGANISM(S): Danio rerio 
2010-05-06 | E-GEOD-20424 | biostudies-arrayexpress
TranscriptomicsGenome-wide mapping of Hif-1α binding sites in zebrafish [microarray]
Analysis of gene expression changes in the von Hippel Lindau when mutant compared to wild-type at 4dpf using a whole genome microarray expression profiling. The von Hippel Lindau mutant displays a systemic hypoxic response under normoxic conditions. We performed single-colour microarrays to identify...
ORGANISM(S): Danio rerio 
2016-03-22 | E-GEOD-70885 | biostudies-arrayexpress
OtherFunctional Mapping of the Zebrafish Early Embryo Proteome and Transcriptome
Data from PeptideAtlas, [[http://www.peptideatlas.org/PASS/PASS00444 PASS00444]]. Replicate: 2, experiment: G_120105_01_zebrafish_band3, file: folder summary. Published as part of J Proteome Res. 2014 Sep 17 . From the Abstract: {{i}} Zebrafish is a popular system for studying vertebrate developmen...
ORGANISM(S): Fish_e 
GPM32310004416 | GPMDB
TranscriptomicsGenome wide expression profiling during spinal cord regeneration identifies comprehensive cellular responses in zebrafish
Among the vertebrates, teleost and urodele amphibians are capable of regenerating their central nervous system. We have used crush injury method on zebrafish spinal cord, which is a common mammalian mode of injury in spinal cord. To identify the molecular mechanisms of the underlying cellular events...
ORGANISM(S): Danio rerio 
2012-12-01 | E-GEOD-39295 | biostudies-arrayexpress
TranscriptomicsDeep sequencing of small RNA facilitates tissue and sex associated microRNA discovery in zebrafish
The role of microRNAs in gene regulation has been well established. The extent of miRNA regulation also increases with increasing genome complexity. Though the number of genes appear to be equal between human and zebrafish, substantially less microRNAs have been discovered in zebrafish compared to h...
ORGANISM(S): Danio rerio 
2015-10-16 | E-GEOD-57169 | biostudies-arrayexpress
GenomicsGenome-wide mapping of Hif-1α binding sites in zebrafish [ChIP-seq]
Analysis of the binding sites of Hif-1α in both wild-type and von Hippel Lindau mutant zebrafish lines at 4dpf by ChIP linked next generation sequencing. The von Hippel Lindau mutant displays a systemic hypoxic response under normoxic conditions. Results show the extent of Hif-1α binding to the ge...
ORGANISM(S): Danio rerio 
2016-03-22 | E-GEOD-70727 | biostudies-arrayexpress
TranscriptomicsZebrafish: Estrogen induced gene expression
We performed microarray experiment on zebrafish exposed to estrogen (17β-estradiol; a classified carcinogen) and an anti-estrogen (ICI 182,780). Our transcriptome analysis captured multiple estrogen-responsive genes and signaling pathways that increased cell proliferation, promoted DNA damage and ge...
ORGANISM(S): Danio rerio 
2011-03-08 | E-GEOD-27707 | biostudies-arrayexpress
Sort   by:  
 Page size