Matrix vesicles

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Unknown (904)
Proteomics (346)
Genomics (107)
Transcriptomics (74)
Metabolomics (12)
Methylation profiling (1)

Organisms

Allexis (316)
Arabidopsis thaliana (316)
Bos taurus (316)
Callinectes sapidus (316)
Drosophila melanogaster (316)
Entamoeba histolytica HM-1:IMSS-A (316)
Escherichia coli (316)
Homo sapiens (316)
Leishmania major strain Friedlin (316)
Listeria monocytogenes (316)
Medicago truncatula (316)
Meleagris gallopavo (316)
Homo sapiens (52)
Mus musculus (40)
Rattus norvegicus (5)
Sus scrofa (2)
Drosophila melanogaster (2)
Danio rerio (2)
Capra hircus (2)
Listeria monocytogenes (1)
Oncorhynchus mykiss (1)
Trichoplusia ni (1)
Streptococcus pneumoniae TIGR4 (1)
Cervus nippon (1)
synthetic construct (1)
Oryctolagus cuniculus (1)
Rattus rattus (1)
Streptococcus mutans TCI-11 (1)
Amphistegina lobifera (1)
Human betaherpesvirus 5 (1)

Organisms

Homo sapiens (40)
Mus musculus (23)
Rattus norvegicus (4)
Capra hircus (2)
Trichoplusia ni (1)
Cervus nippon (1)
Sus scrofa (1)
Drosophila melanogaster (1)
Danio rerio (1)

Repository

pride (316)
ENA (88)
geo (69)
biostudies-arrayexpress (25)
MassIVE (12)
iProX (11)
MetaboLights (11)
jPOST (4)
PanoramaPublic (2)
GNPS (1)
PAXDB (1)

Tissue

Cell culture (65)
Brain (22)
Blood plasma (21)
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Extracellular vesicle (16)
Blood (11)
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Cerebrospinal fluid (9)
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Plant cell (7)
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Breast (4)
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Spleen (3)

Disease

Breast cancer (16)
Disease free (12)
Colon cancer (5)
Intracerebral hemorrhage (3)
Multiple sclerosis (3)
Parkinson's disease (3)
Alzheimer's disease (2)
Brain cancer (2)
COVID-19 (2)
Cardiovascular system disease (2)
Malaria (2)
Malignant neoplasm of ovary (2)
Pneumonia (2)
Prostate adenocarcinoma (2)
Psoriasis (2)
Pulmonary tuberculosis (2)
Rheumatoid arthritis (2)
Short stature-onychodysplasia-facial dysmorphism-hypotrichosis syndrome (1)
Acute leukemia (1)
Acute monocytic leukemia (1)
Amyotrophic lateral sclerosis (1)
Azoospermia (1)
Chagas disease (1)
Encephalopathy (1)
Hepatic fibrosis (1)
Huntington Disease (1)
Obesity (1)
Peripheral neuropathy (1)
Plasmodium falciparum malaria (1)
Plasmodium vivax malaria (1)

Technology Type

Mass Spectrometry (316)
Shotgun proteomics (171)
Bottom-up proteomics (57)
Gel-based experiment (36)
Data-dependent acquisition (32)
Affinity purification coupled with mass spectrometry proteomics (25)
Data-independent acquisition (12)
SWATH MS (12)
Top-down proteomics (11)
Mass spectrometry (6)
Mass spectrometry assay (5)
DiaPASEF (3)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
SRM/MRM (1)

Instrument Platform

Q Exactive (6)
Liquid Chromatography MS - positive - reverse phase (5)
NextSeq 500 (4)
Liquid Chromatography MS - negative - reverse phase (3)
Orbitrap Fusion Lumos (2)
TimsTOF Pro 2 (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
NextSeq 2000 (1)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)
Q Exactive HF (1)
LCQ Deca XP Plus (1)
LTQ Orbitrap (1)
OrbiTrap Exactive Q HF (1)
Orbitrap Eclipse (1)
Q Exactive HF-X (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - alternating - reverse-phase (1)

Publication Date

2026 (75)
2025 (62)
2022 (53)
2024 (50)
2023 (40)
2021 (39)
2020 (25)
2019 (25)
2018 (20)
2015 (15)
2016 (14)
2013 (7)
2017 (6)
2014 (4)
2012 (3)
2011 (2)
2010 (1)
2005 (1)

UNIPROT ID/AC

208964.PA4212 (1)
208964.PA4213 (1)
208964.PA4214 (1)
208964.PA4215 (1)
208964.PA4216 (1)
208964.PA4277 (1)
3MGH_PSEAE (1)
6PGL_PSEAE (1)
A2MGH_PSEAE (1)
AAT_PSEAE (1)
ACCA_PSEAE (1)
ACCC_PSEAE (1)
ACCD_PSEAE (1)
ACEA_PSEAE (1)
ACEK_PSEAE (1)
ACKA_PSEAE (1)
ACNA_PSEAE (1)
ACNB_PSEAE (1)
ACSA1_PSEAE (1)
ACSA2_PSEAE (1)
AGUA_PSEAE (1)
AHPF_PSEAE (1)
AK_PSEAE (1)
ALF_PSEAE (1)
ALG44_PSEAE (1)
ALGA_PSEAE (1)
ALGB_PSEAE (1)
ALGC_PSEAE (1)
ALGP_PSEAE (1)
ALGR_PSEAE (1)

CHEBI ID

CHEBI:142440 (2)
CHEBI:84814 (2)
CHEBI:78261 (2)
CHEBI:133515 (2)
CHEBI:73028 (2)
CHEBI:75062 (2)
CHEBI:35766 (2)
CHEBI:21054 (2)
CHEBI:1606 (2)
CHEBI:84842 (2)
CHEBI:45658 (2)
CHEBI:33527 (2)
CHEBI:44673 (2)
CHEBI:27487 (2)
CHEBI:24462 (2)
CHEBI:82968 (2)
CHEBI:82966 (2)
CHEBI:24149 (2)
CHEBI:133144 (2)
CHEBI:28116 (2)
CHEBI:75038 (2)
CHEBI:78268 (2)
CHEBI:74000 (2)
CHEBI:73009 (2)
CHEBI:74977 (2)
CHEBI:133141 (2)
CHEBI:133139 (2)
CHEBI:67119 (2)
CHEBI:70958 (2)
CHEBI:28939 (2)

Metabolite Name

Spectinomycin (4)
4-Oxododecanedioic acid (3)
3-Amino-2,3-dihydrobenzoic acid (3)
Leucyl-leucine (3)
3-Methyldioxyindole (3)
Paliperidone (3)
PC(16:0/16:0) (3)
FAD (3)
Cer(d18:1/16:0) (3)
Stearidonic acid (3)
Sinapine (3)
Linoleamide (3)
Cytosine (3)
Adrenic acid (3)
Tetradecanedioic acid (3)
Adenine (3)
Oleic acid (3)
Genistein (3)
Daidzein (3)
Homocholic acid (2)
N-linoleoyl taurine (2)
4,4'-Thiodianiline (2)
Chitin (2)
Lisofylline (2)
Deoxyloganic acid (2)
4-[2-[2-[3-Acetamido-2,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]oxypropanoylamino]propanoylamino]-5-amino-5-oxopentanoic acid (2)
Nikkomycin (2)
Reserpic acid (2)
N-Oleoyl Leucine (2)
Docosapentaenoic acid (22n-3) (2)

First Public Date

2025 (31)
2026 (22)
2024 (8)
2023 (5)
2021 (5)
2022 (4)
2018 (4)
2019 (3)
2017 (2)
2020 (1)
2016 (1)
2015 (1)
2014 (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (2)
Not available (1)

Study type

Transcription profiling by array (13)
RNA-seq of coding RNA (6)
Unknown experiment type (1)
Animal - High-throughput sequencing (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (119)
2022 (112)
2023 (111)
2024 (106)
2020 (94)
2021 (88)
2019 (45)
2018 (32)
2017 (30)
2014 (29)
2016 (28)
2026 (22)
2015 (21)
2013 (21)
2012 (12)
2011 (10)
2010 (9)
2007 (7)
2005 (5)
2004 (5)
2000 (5)
2009 (4)
2008 (4)
2003 (4)
2006 (3)
2001 (2)
2002 (1)

Lab affiliation

School of Life Sciences, University of Warwick (9)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (5)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (4)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (4)
Department of Comparative Biochemistry and Bioanalytics Faculty of Biochemistry, Biophysics and Biotechnology Jagiellonian University in Krakow (3)
Assistant Professor, Departments of Oncology & Pathology, McGill University Principal Investigator, Cancer Research Program, MUHC-RI 1001 Decarie Blvd, EM2.2218 514.934.1934 ext 76307 Montréal, Canada (2)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain. (2)
Department of Molecular Genetics and Microbiology, IMRIC, Faculty of Medicine, Hebrew University, Jerusalem, Israel (2)
Division of Gastroenterology and Hepatology; Shanghai Institute of Digestive Disease; NHC Key Laboratory of Digestive Diseases; State Key Laboratory for Oncogenes and Related Genes; Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200001, China (2)
EDyP (2)
Institute of Immunology and Department of Orthopaedics of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310058, China (2)
Institute of Sports Medicine Copenhagen, Bispebjerg Hospital, and Center for Healthy Aging, University of Copenhagen, Copenhagen, Denmark. (2)
Medical Microbiology and Immunology, Division of Infectious Disease (2)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (2)
Professor, Microbiology, Immunology, and Pathology Mycobacteria Research Laboratories Scientific Director, Rocky Mountain Regional Biocontainment Laboratory Editor-in-chief, BMC Mycobacteria (2)
VIB Department of Medical Protein Research, UGent Proteome Analysis and Bioinformatics Unit A. Baertsoenkaai 3 B9000 Gent Belgium (2)
-Translational Cardiomyology Laboratory, Stem Cell and Developmental Biology, Department of Development and Regeneration, KU Leuven, Leuven, Belgium -Histology and Medical Embryology Unit, Department of Anatomy, Histology, Forensic Medicine and Orthopaedics, Sapienza University of Rome, Rome, Italy (1)
1 Dept Neuroscience, Imaging and Clinical Sciences, “G. d’Annunzio” University Chieti-Pescara, Italy 2 Interuniversity Institute of Myology, Italy; lorenzo.marramiero@unich.it; es.difilippo@unich.it; tiziana@pietrangelo@unich.it; stefania.fulle@unich.it; rosa.mancinelli@unich.it 3 Functional Evaluation Laboratory, “G. d’Annunzio” University Chieti-Pescara, Italy (1)
1)Department of Pediatrics III, University Hospital Essen, Hufelandstrasse 55, 45147 Essen, Germany. 2)Department of General, Visceral, Vascular and Transplant Surgery, Medical Faculty, University Hospital Essen, Hufelandstrasse 55, 45147 Essen, Germany. (1)
1. Shengli Clinical Medical College of Fujian Medical University, Fujian Provincial Hospital, Fuzhou University Affiliated Provincial Hospital, Department of Neurology, Fuzhou 350108, China 2.School of Medicine, The Chinese University of Hong Kong, Shenzhen 518172, China (1)
Angiogenesis and Tumor Microenvironment Lab The Swiss Institute for Experimental Cancer Research (ISREC) School of Life Sciences Ecole Polytechnique Fédérale de Lausanne (EPFL) Swiss Federal Institute of Technology, Lausanne, Switzerland (1)
Appel Alzheimer's Disease Research Institute & Brain and Mind Research Institute Weill Cornell Medicine New York, NY USA (1)
Assisstant professor. Graduate College. Rush University Medical Center. (1)
Assistant Professor, Oncology and Pathology McGill University Health Centre Research Institute Cancer Research Program MUHC Glen Site 1001 Decarie Boulevard Montreal, Quebec H4A 3J1 (1)
Assistant Professor, University of Nebraska Medical Center (1)
Associate Professor Director of Proteomics and Mass Spectrometry Facility School of Biological Sciences Nanyang Technological University 60 Nanyang Drive, Singapore 637551 Tel: (65) 6514-1006; Fax: (65) 6791-3856 Email: sksze@ntu.edu.sg Web: http://proteomics.sbs.ntu.edu.sg/ (1)
B CUBE Technische Universität Dresden Tatzberg 41 03107 Dresden (1)
Baker Heart & Diabetes Inst. (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Germany Bioanalytics, Institute for Clinical Chemistry, University Medical Center Goettingen, Germany (1)

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miR-9394b from Lactobacillus paracasei extracellular vesicles targets iNOS to reprogram host NO-ornithine metabolism and ameliorate ulcerative colitis

Background Probiotics have attracted considerable interest for ulcerative colitis (UC); however, their efficacy is highly strain-specific and the underlying molecular mechanisms remain incompletely understood.

Results Accumulating evidence indicates that bacterial extracellular vesicles (BE...

2026-01-23 | MTBLS13753 | MetaboLights

Metabolomic profiling of zebrafish DSS-induced colitis intervened by Akkermansia muciniphila-derived extracellular vesicles (AmEVs)

This study performs untargeted metabolomics analysis on intestinal tissues of DSS-induced colitis zebrafish models to uncover the metabolic regulatory mechanisms of AmEVs. We compared intestinal metabolite profiles between two experimental groups: DSS-induced colitis model group and AmEV interventio...

2026-07-22 | MTBLS14855 | MetaboLights

Chromosomal instability promotes cell migration and invasion via EFEMP1 secretion in extracellular vesicles

To better understand the mechanism underlying the invasion and migration phenotype instigated by EFEMP1 EVs (extracellular vesicles), we performed RNA sequencing analysis on BT549 cells treated with control and EFEMP1KD EVs.

ORGANISM(S): Homo sapiens

2025-09-13 | E-MTAB-14473 | biostudies-arrayexpress

Comprehensive analysis of miRNAs in matrix vesicles

PRJNA589030 | ENA

Extracellular Vesicles from probiotics mediated Walnut green husk polysaccharide alleviates ochratoxin-A-induced cognitive impairment via SCFA and 5-HT mediated microbiota-gut-brain axis

BACKGROUND: Ochratoxin A (OTA) have made it a serious hazard to food safety worldwide that poses a serious health risk to humans. Our previous research showed that Walnut green husk polysaccharides (WGP) can effectively alleviate intestinal inflammation and intestinal microbiota ...

2024-10-10 | MTBLS10673 | MetaboLights

Role of miRNAs in acute kidney injury recovery induced by mesenchymal stromal cells and derived extracellular vesicles.

Phenotypic changes induced by extracellular vesicles (EVs) have been implicated in the recovery of acute kidney injury (AKI) induced by mesenchymal stromal cells (MSCs). miRNAs are potential candidates for cell reprogramming towards a pro-regenerative phenotype. The aim of the present study was to e...

ORGANISM(S): Mus musculus

2015-05-07 | E-GEOD-59958 | biostudies-arrayexpress

GPM6B regulates osteoblast differentiation and induction of mineralization by controlling cytoskeleton and matrix vesicle release.

Analysis of GPM6B silenced osteogenic hMSC at gene expression level. Analysis is showing significant changes in genes involved in cytoskeleton organization and biogenesis. Immunocytochemistry confirms changed distribution of actin filaments and change in shape and in size of focal adhesions upon GP...

ORGANISM(S): Homo sapiens

2011-06-01 | E-GEOD-26004 | biostudies-arrayexpress

WDFY2 restrains matrix metalloproteinase secretion and cell invasion by controlling VAMP3-dependent recycling

The endosomal FYVE- and WD40-domain-containing protein WDFY2 has been assigned a function as tumor suppressor, but its functional mechanism has remained elusive. Here we have used confocal, widefield and super-resolution fluorescence microscopy to show that WDFY2 localizes to the base of retromer-co...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2019-07-23 | MSV000084122 | MassIVE

1α,25-Dihydroxyvitamin D3 Regulates Packaging of microRNAs within Extracellular Matrix Vesicles and Their Release in the Matrix

PRJNA785592 | ENA

Comprehensive analysis of miRNAs in matrix vesicles

miRNAs in matrix vesicles isolated from the extracellular matrix of MC3T3-E1 cell cultures

ORGANISM(S): Mus musculus

2019-11-13 | GSE140242 | GEO

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1444 Results

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