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UnknownMultiple Transporters and Glycoside Hydrolases Are Involved in Arabinoxylan-Derived Oligosaccharide Utilization in Bifidobacterium pseudocatenulatum.
Arabinoxylan hydrolysates (AXH) are the hydrolyzed products of the major components of the dietary fiber arabinoxylan. AXH include diverse oligosaccharides varying in xylose polymerization and side residue modifications with arabinose at the O-2 and/or O-3 position of the xylose unit. Previous studi...
S-EPMC7688211 | biostudies-literature
UnknownDevelopment of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human feces.
For the detection and identification of predominant bacteria in human feces, 16S rRNA-gene-targeted group-specific primers for the Bacteroides fragilis group, Bifidobacterium, the Clostridium coccoides group, and Prevotella were designed and evaluated. The specificity of these primers was confirmed ...
S-EPMC129894 | biostudies-literature
UnknownKey bacterial taxa and metabolic pathways affecting gut short-chain fatty acid profiles in early life.
Infant gut microbiota development affects the host physiology throughout life, and short-chain fatty acids (SCFAs) are promising key metabolites mediating microbiota-host relationships. Here, we investigated dense longitudinally collected faecal samples from 12 subjects during the first 2 years (n =...
S-EPMC8397723 | biostudies-literature
ProteomicsHLA class II ligandome of colon cancer tissues for neoantigen identification
MS data of HLA class II ligandome of human colon cancer tissues
ORGANISM(S): Homo Sapiens (human) 
PXD054060 | JPOST Repository
TranscriptomicsMicroRNA profiling of wild type and p72 knock-out mice embryos
To examine the effect of DEAD-box RNA helicase subunits on the primary miRNAs processing by Drosha complex, we made knockout mice of p72, DEAD-box RNA helicase, a component of Drosha complex. And we compare the miRNA expression profiles derived from whole mice embryo between wild-type and p72 KO mic...
ORGANISM(S): Mus musculus 
2007-04-12 | E-MEXP-1052 | biostudies-arrayexpress
TranscriptomicsCommensal microbiota contributes to chronic endocarditis and arrhythmia in TAX1BP1 deficient mice.
Tax1-binding protein 1 (Tax1bp1) negatively regulates NF-κB by editing the ubiquitylation of target molecules with its catalytic partner A20. Genetically engineered TAX1BP1-deficient (KO) mouse develops age-dependent inflammatory constitution in multiple organs including heart, liver, skin and succu...
ORGANISM(S): Mus musculus 
2014-02-01 | E-GEOD-43932 | biostudies-arrayexpress
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