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TranscriptomicsGlobal gene expression analysis of Arabidopsis ppi2-1 mutant
This study aims at investigating the gene expression profile of Arabidopsis ppi2-1 mutant. Using Super-SAGE, we compared the gene expression profile of ppi2-1 mutant with that of wild-type Arabidopsis. To obtain the SuperSAGE libraries, we followed the original SuperSAGE protocol described by Mat...
ORGANISM(S): Arabidopsis thaliana 
2008-08-08 | E-GEOD-12325 | biostudies-arrayexpress
TranscriptomicsSuperSAGE data from skunk cabbage spadices
This study aims at investigating the gene expression profile of thermogenic skunk cabbage (Symplocarpus renifolius). Using Super-SAGE, we compared the gene expression profile of different developmental stages of skunk cabbage spadices. To obtain the SuperSAGE libraries, we followed the original Sup...
ORGANISM(S): Symplocarpus renifolius 
2011-12-22 | E-GEOD-29852 | biostudies-arrayexpress
TranscriptomicsHT-SuperSAGE of the gut tissue of a Vip3A-resistant Heliothis virescens F. (Lepidoptera: Noctuidae) strain provides insights into its evolution and toxin adaptation
Summary: Multi-toxins Bt-crops carrying insecticidal toxins with similar host spectrum and different mode of action e.g. Cry and Vip, are expected to improve resistance management in target pests. Control failure has been informed for Cry toxins but not for Vip3A, of which no mechanism of resistance...
ORGANISM(S): Heliothis virescens 
2015-08-21 | E-GEOD-72228 | biostudies-arrayexpress
TranscriptomicsHigh-throughput SuperSAGE for transcript profiling in berry tissues of Vitis vinifera L. under different light regimes
SuperSAGE is a method of digital gene expression profiling that allows isolation of 26bp tag fragments from expressed transcripts. Because its tag size is larger than that of conventional SAGE, SuperSAGE allowed a secure tag-to-gene annotation using BLAST search against grape genome databases.Transc...
ORGANISM(S): Vitis vinifera 
2014-06-03 | E-GEOD-55473 | biostudies-arrayexpress
Transcriptomicsleaf_greenhouse
SuperSAGE was applied in the non-model organism banana (Musa acuminata) one leaf sample was analysed, no replicates were included
ORGANISM(S): Musa acuminata 
2005-06-15 | E-GEOD-2811 | biostudies-arrayexpress
TranscriptomicsHigh-throughput SuperSAGE for digital gene expression analysis of multiple samples using Next Generation Sequencing
We established a protocol of the SuperSAGE technology combined with next-generation sequencing, coined “High-Throughput (HT-) SuperSAGE”. SuperSAGE is a method of digital gene expression profiling that allows isolation of 26-bp tag fragments from expressed transcripts. In the present protocol, index...
ORGANISM(S): Danio rerio 
2010-09-30 | E-GEOD-20682 | biostudies-arrayexpress
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