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ProteomicsEnrichment of proteins in purified Saccharomyces cerevisiae vacuoles relative to a whole cell extract.
The project sought to test the localization of several proteins that were suspected to be in vacuoles. To this end, the proteomes of whole cells and of a purified vacuolar fraction were quantified to estimate the enrichment factors of established vacuolar markers and compare them to the enrichment o...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2025-09-19 | PXD060102 | Pride
Yeast Organelle proteome Pho91 Vacuole 
TranscriptomicsTranscription profiling of yeast with a C-terminal deletion of the RNA polymerase II elongation factor Spt6 or overexpression of Spt6
Influence of a C-terminal deletion of the RNA polymerase II elongation factor Spt6 on the transcription of the yeast genome. In parallel the influence of a Spt6 overexpression on gene expression is analyzed.
ORGANISM(S): Saccharomyces cerevisiae 
2009-04-08 | E-MEXP-2123 | biostudies-arrayexpress
TranscriptomicsmRNA exporter ChIP-chip
ChIP-chip was performed to identify binding locations for TREX subunits and Nab2 and Npl3 in yeast
ORGANISM(S): Saccharomyces cerevisiae 
2013-12-06 | E-MTAB-1400 | biostudies-arrayexpress
ProteomicsDynamics and consequences of widespread transcript isoform changes during neuronal differentiation
Static gene expression programs have been extensively characterized in stem cells and mature human cells. However, the dynamics of RNA isoform change upon cell-state transitions during cell differentiation, and the determinants and functional consequences have largely remained unclear. Here, we used...
ORGANISM(S): Homo sapiens (Human) 
2024-04-11 | PXD046084 | Pride
Cell differentiation Neurogenesis Multi-omics Rna isoform Nanopore sequencing 
MetabolomicsLipid Data Analyzer: Analysis of a complex biological system from murine liver samples (Murine liver lipidome experiment)
Lipid Data Analyzer (LDA; http://genome.tugraz.at/lda2) provides automated and reliable annotation of lipid species and their molecular structures in high-throughput data from chromatography-coupled tandem mass spectrometry using embedded rule sets. Using various low- and high-resolution mass spectr...
2017-11-07 | MTBLS396 | MetaboLights
TranscriptomicsTranscription profiling by array of yeast wild type and delta Sro9 cells
The influence of Sro9 on steady-state levels of a specific set of mRNAs in yeast was investigated. This was assessed using whole genome expression profiling of delta Sro9 in comparison to wild-type cells.
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-01 | E-MEXP-2678 | biostudies-arrayexpress
ProteomicsCROP: A Retromer- PROPPIN complex mediating membrane fission in the endo-lysosomal system
Endo-lysosomal compartments exchange proteins by fusing, fissioning, and through endosomal transport carriers. Thereby, they sort many plasma membrane receptors and transporters and control cellular signaling and metabolism. How the membrane fission events are catalyzed is poorly understood. Here, w...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2022-05-05 | PXD031244 | Pride
Endo-lysosomal system Yeast 
TranscriptomicsTranscription profiling of a Bur1 ts mutant, a Rfa1 ts mutant and of a Bur1-Rfa1 double mutant yeast strain
Transcription profiling of a Bur1 ts mutant (bur1-7), a Rfa1 ts mutant (rfa1-249) and of a Bur1-Rfa1 double mutant (bur1-7 rfa1-249) yeast strain.
ORGANISM(S): Saccharomyces cerevisiae 
2010-03-01 | E-MEXP-2536 | biostudies-arrayexpress
UnknownFinal 5-Year Study Results of DASISION: The Dasatinib Versus Imatinib Study in Treatment-Naive Chronic Myeloid Leukemia Patients Trial.
Not available
S-EPMC5118045 | biostudies-literature
TranscriptomicsTranscription profiling of yeast with SCP160 gene expression shut down using doxycycline
The influence of the shut-down of SCP160 gene expression on the yeast transcriptome was investigated in the present study.
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-01 | E-MEXP-2581 | biostudies-arrayexpress
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