McCarthy K K - OmicsDI

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Unknown (1671)
Genomics (52)
Transcriptomics (36)
Proteomics (33)
Genomic (1)
Multiomics (1)
Metabolomics (1)

Organisms

Homo sapiens (86)
Mus musculus (10)
Glycine max (7)
Rattus norvegicus (3)
Aplysia californica (2)
Arabidopsis thaliana (2)
Salmonella enterica subsp. enterica serovar Enteritidis (1)
Zea mays (1)
Pseudomonas aeruginosa PAO1 (1)
Drosophila melanogaster (1)
Mesomycoplasma hyopneumoniae 232 (1)
Plasmodium falciparum 3D7 (1)

Organisms

Acinetobacter baumannii AB5075 (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Repository

EGA (46)
biostudies-arrayexpress (42)
pride (26)
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Tissue

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Disease

Melanoma (4)
Cardiovascular system disease (1)
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Multiple myeloma (1)
Pancreatic ductal adenocarcinoma (1)
Plasmodium falciparum malaria (1)
Sarcoma (1)

Technology Type

Mass Spectrometry (26)
Shotgun proteomics (11)
Bottom-up proteomics (9)
Illumina 15K (8)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-independent acquisition (5)
Infinium_370k - GenomeStudio (1)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Affymetrix 6.0 (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
Illumina Genome Analyzer II (1)
Mass spectrometry (1)
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Instrument Platform

Illumina HiSeq 2000 (7)
NextSeq 500 (3)
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Q Exactive (3)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
LTQ Velos (1)
Orbitrap Fusion (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2016 (9)
2014 (9)
2022 (8)
2017 (6)
2024 (6)
2021 (4)
2015 (4)
2012 (4)
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2010 (3)
2009 (3)
2025 (3)
2020 (2)
2008 (2)
2019 (1)
2006 (1)
2026 (1)
2023 (1)

CHEBI ID

CHEBI:24809 (1)

Metabolite Name

Indole 3-carboxylic acid (1)

First Public Date

2025 (1)
2022 (1)

Classification

bacteria (2)

Study type

Transcription profiling by array (16)
RNA-seq of coding RNA (13)
ChIP-seq (2)
RNA-seq of coding RNA from single cells (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
Animal - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)

Release Date

2022 (194)
2021 (183)
2023 (166)
2024 (137)
2025 (130)
2020 (111)
2019 (101)
2015 (87)
2018 (84)
2017 (83)
2016 (81)
2014 (77)
2013 (52)
2012 (52)
2011 (45)
2010 (40)
2009 (28)
2026 (19)
2008 (16)
2007 (11)
2006 (4)
2005 (3)
2004 (3)
2002 (3)
2001 (1)
2000 (1)
1999 (1)

Lab affiliation

Crick-GSK LinkLabs, UK (3)
Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
College of Life Sciences, University of Dundee (2)
1School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore, 637551, Singapore (1)
Bristol Myers Squibb (1)
Centre for Cancer Biology, University of South Australia and SA Pathology, Adelaide, Australia (1)
Department of Genetics, Department of Radiation Oncology, Cancer Genomics Netherlands, Erasmus Medical Center Cancer Institute, Rotterdam, The Netherlands (1)
Department of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA (1)
Hematology, Department of Translational and Precision Medicine, Sapienza University, Rome, Italy. (1)
Knight Cancer Institute Oregon Health & Science University Portland, OR 97239 USA (1)
Leader of the Molecular and Systems Oncology Team in the Division of Molecular Pathology at The Institute of Cancer Research, London, UK (1)
Molecular Structure of Cell Signalling Laboratory, The Francis Crick Institute, United Kingdom (1)
Molecular and Systems Oncology Laboratory Division of Molecular Pathology The Isntitute of Cancer Research London, United Kingdom (1)
Nanyang Technological University (1)
Research Group Leader Bulut-Karslioglu lab Dept. of Genome Regulation Max Planck Institute for Molecular Genetics Ihnestrasse 63-73 14195 Berlin GERMANY (1)
Richard Dimbleby Laboratory of Cancer Research, School of Cancer & Pharmaceutical Sciences, King's College London, London, UK. UCL Cancer Institute, University College London, London, United Kingdom. Cancer Research UK City of London Centre. GSK (1)
School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, LS2 9JT, UK. (1)
The Walter and Eliza Hall institute of Medical Research, Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, The University of Melbourne (1)
Tumor Biology Moffitt Cancer Center Tampa, FL, USA (1)
University of Arizona (1)
University of Arizona Plant Sciences (1)

Tags

pathogen (2)
pathogen:bacterium (2)
xref:PubMed:40169895 (1)
xref:PubMed:36412260 (1)

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Alteration of global transcription by the artificial sweetener acesulfame K in Acinetobacter baumannii AB5075

PRJNA821209 | ENA

Genome Sequences of Cluster K Mycobacteriophages Deby, LaterM, LilPharaoh, Paola, SgtBeansprout, and Sulley.

Not available

S-EPMC6328665 | biostudies-literature

Lithium-response pathway in hiPSCs implicates the phosphoregulatory set-point for a cytoskeletal

Tobe BTD, Crain AM, Winquist AM, Calabrese B, Makihara H, Zhao W, Lalonde J, Nakamura H, Konopaske G, Sidor M, Pernia C, Yamashita N, Wada M, Inoue Y, Nakamura F, Sheridan SD, Logan R, Brandel M, Wu D, Hunsberger J, Dorsett L, Duerr C, Basa RCB, McCarthy MJ, Udeshi N, Mertins P, Carr SA, Rouleau G, ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-04-21 | MSV000080975 | MassIVE

Exploring deprescribing opportunities for community pharmacists: Protocol for a qualitative study.

Not available

S-EPMC6141936 | biostudies-literature

Coumarinolignans with Reactive Oxygen Species (ROS) and NF-κB Inhibitory Activities from the Roots of Waltheria indica.

Not available

S-EPMC9147481 | biostudies-literature

Concept, design and implementation of a cardiovascular gene-centric 50 k SNP array for large-scale genomic association studies.

Not available

S-EPMC2571995 | biostudies-literature

Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study.