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TranscriptomicsTranscription profiling of S. cerevisiae single transcription factor deletions
Study expression effects of single transcription factor deletions.
ORGANISM(S): Saccharomyces cerevisiae 
2005-06-05 | E-MEXP-351 | biostudies-arrayexpress
GenomicsLigand-dependent dynamics of retinoic acid receptor binding during early neurogenesis
Among its many roles in development, retinoic acid determines the anterior-posterior identity of differentiating motor neurons by activating Retinoic Acid Receptor (RAR)-mediated transcription. RAR is thought to bind the genome constitutively, and only induce transcription in the presence of the ret...
ORGANISM(S): Mus musculus 
2010-12-10 | E-GEOD-19409 | biostudies-arrayexpress
TranscriptomicsPromoter proximal pausing and its regulation by c-Myc in embryonic stem cells: ChIP-chip
Recruitment of the RNA Polymerase II (Pol II) transcription initiation apparatus to promoters by specific DNA binding transcription factors is well recognized as a key regulatory step in gene expression. We describe here evidence that promoter-proximal pausing is a general feature of transcription ...
ORGANISM(S): Mus musculus 
2010-04-02 | E-GEOD-20529 | biostudies-arrayexpress
GenomicsPromoter proximal pausing and its regulation by c-Myc in embryonic stem cells: ChIP-Seq
Recruitment of the RNA Polymerase II (Pol II) transcription initiation apparatus to promoters by specific DNA binding transcription factors is well recognized as a key regulatory step in gene expression. We describe here evidence that promoter-proximal pausing is a general feature of transcription ...
ORGANISM(S): Mus musculus 
2010-04-02 | E-GEOD-20530 | biostudies-arrayexpress
GenomicsChIP-seq of chromatin modifications and factors associated with transcriptionally active regions of the genome in mES cells
Post-translational modification of histones are coupled to transcription where certain modifications are indicative of an active or inactive region of the genome. Additionally, protein complexes can regulate the placement of nucleosomes across the genome and this influences the ability of DNA-bindi...
ORGANISM(S): Mus musculus 
2012-03-17 | E-GEOD-36561 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of transcription factor binding in yeast cells perturbed with methyl-methanesulfonate
Genome-wide promoter-binding analysis of transcription factors in S.cerevisiae cells perturbed with 0.03% methyl-methanesulfonate for 60 minutes
ORGANISM(S): Saccharomyces cerevisiae 
2006-05-19 | E-TABM-92 | biostudies-arrayexpress
TranscriptomicsPromoter proximal pausing and its regulation by c-Myc in embryonic stem cells
This SuperSeries is composed of the following subset Series: GSE20529: Promoter proximal pausing and its regulation by c-Myc in embryonic stem cells: ChIP-chip GSE20530: Promoter proximal pausing and its regulation by c-Myc in embryonic stem cells: ChIP-Seq Refer to individual Series
ORGANISM(S): Mus musculus 
2010-04-14 | E-GEOD-20485 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast transcription factor deletion strains perturbed with methyl-methanesulfonate
Gene expression profiles of transcription factor deletion strains (S.cerevisiae) perturbed with 0.03% methyl-methanesulfonate for 60 minutes
ORGANISM(S): Saccharomyces cerevisiae 
2006-05-19 | E-TABM-93 | biostudies-arrayexpress
TranscriptomicsExpression time series during the differentiation of ventral motor neurons from embryonic stem cells
The aim of this study is to profile gene expression dynamics during the in vitro differentiation of embryonic stem cells into ventral motor neurons. Expression levels were profiled using Affymetrix microarrays at six timepoints during in vitro differentiation: ES cells (Day 0), embryoid bodies (Day ...
ORGANISM(S): Mus musculus 
2010-12-10 | E-GEOD-19372 | biostudies-arrayexpress
TranscriptomicsRapid clearance of PcG histone modifications from Hox genes anticipates motor neuron differentiation: ChIP-chip
[original Title] Rapid and synchronous clearance of PcG histone modifications from Hox genes anticipates motor neuron differentiation. Hox genes are expressed in patterns that are spatially and temporally collinear with their chromosomal organization. This feature is an evolutionarily conserved hall...
ORGANISM(S): Mus musculus 
2013-07-04 | E-GEOD-19447 | biostudies-arrayexpress
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