McDermott M M - OmicsDI

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Unknown (1407)
Transcriptomics (33)
Genomics (24)
Proteomics (21)
Models (2)
Metabolomics (2)
Genomic (1)

Organisms

Homo sapiens (48)
Mus musculus (6)
Macaca mulatta (4)
Rattus norvegicus (4)
Mammalia (2)
Caenorhabditis elegans (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (2)
Cyanidioschyzon merolae (1)
Brugia malayi (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Cornu aspersum (1)
Escherichia coli (1)
Pyrococcus furiosus (1)

Repository

biostudies-arrayexpress (37)
EGA (20)
pride (14)
MassIVE (6)
BioModels (2)
MetaboLights (2)
dbGaP (1)
PanoramaPublic (1)

Tissue

Cell culture (2)
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Skin epithelium (1)
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Tissues (1)
Vascular associated smooth muscle cell (1)

Disease

Neuroblastoma-undifferentiated (1)
Breast cancer (1)
Colon cancer (1)
Coronary restenosis (1)
Disease free (1)
Lung adenocarcinoma (1)
Malignant neoplasm of ovary (1)

Technology Type

Mass Spectrometry (14)
Shotgun proteomics (7)
Bottom-up proteomics (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Illumina HiSeq 2000 (2)
Mass spectrometry (2)
Data-dependent acquisition (2)

Instrument Platform

Illumina NovaSeq X (3)
Orbitrap Fusion (2)
Q Exactive (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
6140 Quadrupole LC/MS (1)
LTQ Orbitrap Velos (1)
Q Exactive HF (1)
Q Exactive Plus (1)
5975C Series GC/MSD (Agilent) (1)

Publication Date

2016 (8)
2026 (7)
2013 (6)
2012 (6)
2014 (5)
2023 (4)
2024 (3)
2022 (3)
2015 (2)
2011 (2)
2008 (2)
2021 (2)
2017 (2)
2025 (2)
2019 (1)
2009 (1)
2004 (1)
2020 (1)
2018 (1)

UNIPROT ID/AC

O94916 (2)
P16298 (1)
Q99653 (1)

CHEBI ID

CHEBI:29108 (2)
CHEBI:15428 (2)
CHEBI:15728 (2)
CHEBI:15978 (2)
CHEBI:16199 (2)
CHEBI:16335 (2)
CHEBI:16610 (2)
CHEBI:16708 (2)
CHEBI:16958 (2)
CHEBI:17148 (2)
CHEBI:17368 (2)
CHEBI:17385 (2)
CHEBI:17533 (2)
CHEBI:17568 (2)
CHEBI:17754 (2)
CHEBI:18211 (2)
CHEBI:26078 (2)
CHEBI:28757 (2)
CHEBI:32816 (2)
CHEBI:7916 (2)
CHEBI:132477 (1)
CHEBI:132479 (1)
CHEBI:132506 (1)
CHEBI:132948 (1)
CHEBI:132966 (1)
CHEBI:133136 (1)
CHEBI:133139 (1)
CHEBI:133141 (1)
CHEBI:133469 (1)
CHEBI:133534 (1)

Metabolite Name

Adenine (2)
Adenosine (2)
Citrulline (2)
Fructose (2)
Glycerol (2)
Glycine (2)
Hypoxanthine (2)
Putrescine (2)
Spermidine (2)
Uracil (2)
Urea (2)
Xanthine (2)
1,3-diaminopropane (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-arachidonoyl-GPI (20:4)* (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6)* (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2)* (1)
1-methylguanidine (1)
1-methylhistamine (1)
1-methylhistidine (1)
1-oleoyl-2-linoleoyl-GPE (18:1/18:2)* (1)
1-oleoyl-GPI (18:1)* (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)* (1)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1)* (1)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (22)
RNA-seq of coding RNA (5)
ChIP-seq (4)
RNA-seq of coding RNA from single cells (2)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Genotyping by high throughput sequencing (1)

Release Date

2022 (156)
2023 (139)
2021 (133)
2024 (125)
2020 (112)
2019 (110)
2025 (108)
2016 (90)
2017 (83)
2018 (75)
2015 (65)
2014 (55)
2013 (35)
2012 (32)
2011 (30)
2010 (26)
2009 (19)
2026 (14)
2008 (13)
2007 (7)
2006 (4)
2005 (3)
2004 (2)
2002 (2)
2001 (2)
2003 (1)
1998 (1)
1997 (1)
1996 (1)

Lab affiliation

Centre for Genomics and Computational Biology Barts Cancer Institute Queen Mary University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ (1)
City University of New York Advanced Science Research Center - Nanoscience Department, USA City University of New York Hunter College -Chemistry & Biochemistry Department, USA (1)
College of Life Science, Northwest University, Xi’an, 710069, P. R. China (1)
Department of Biology, York University, Toronto, Ontario, Canada (1)
Department of Chemisry & Biochemistry at Montanan State University, Bozeman, MT (1)
Departments of Pediatrics and Immuno-Oncology, Beckman Research Institute, City of Hope National Medical Center, Duarte CA 91010 (1)
Harvard Medical School Beth Israel Deaconess Medical Center Director, HMS Center for Glycoscience Director, National Center for Functional Glycomics CLS 11087 - 3 Blackfan Circle Boston, MA 02115, USA (1)
Mass Spectrometry Facility Barts Cancer Institute, Queen Mary University of London Charterhouse Square London E1M 6BQ (1)
NICB - Dublin City University (1)
Pacific Northwest National Laboratory (1)
Physiology, University of Galway, Ireland (1)
Tanz Centre for Research in Neurodegenerative Diseases, University of Toronto (1)
UCSF (1)
Wellcome Trust Sanger Institute (1)

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Whole-Genome Sequence Analysis of CTX-M Containing Escherichia coli Isolates from Retail Meats and Cattle in the United States.

Not available

S-EPMC6154757 | biostudies-literature

Comparative Analysis of Extended-Spectrum-β-Lactamase CTX-M-65-Producing Salmonella enterica Serovar Infantis Isolates from Humans, Food Animals, and Retail Chickens in the United States.

Not available

S-EPMC5487606 | biostudies-literature

SAM homeostasis is regulated by CFI_m-mediated splicing of MAT2A.

Not available

S-EPMC8139829 | biostudies-literature

B cell engagement with HIV-1 founder virus envelope predicts development of broadly neutralizing antibodies.

Not available

S-EPMC8245051 | biostudies-literature

Moisture Modulates Soil Reservoirs of Active DNA and RNA viruses

Global proteomics analyses to identify viral proteins in the soil microbiome. Samples were digested with trypsin, then analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS processing pipeline.

ORGANISM(S): Environmental Samples <bacteria> (ncbitaxon:48479)

MSV000086144 | MassIVE

Identification of StpA-binding sites on the Salmonella genome

We used ChIP-chip analysis to identify where the nucleoid associated protein StpA binds on the Salmonella Typhimurium genome. We identified 285 chromosomal regions bound by StpA, ranging in size from 400 to 3500 base pairs and containing 572 genes. Comparison of the ChIP data revealed that StpA disp...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

2009-10-28 | E-GEOD-18450 | biostudies-arrayexpress

Complete Genome Sequence of Citrobacter freundii Myophage Maroon.

Not available

S-EPMC6813397 | biostudies-literature

Mammalian phospholipase D: Function, and therapeutics.

Not available

S-EPMC7233427 | biostudies-literature

SARS-CoV-2 recombinant spike ferritin nanoparticle vaccine adjuvanted with Army Liposome Formulation containing monophosphoryl lipid A and QS-21: a phase 1, randomised, double-blind, placebo-controlled, first-in-human clinical trial.

Not available

S-EPMC11192176 | biostudies-literature

Lipid transfer proteins and instructive regulation of lipid kinase activities: Implications for inositol lipid signaling and disease.