McDonald James J

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Unknown (187)
Genomics (13)
Metabolomics (3)
Proteomics (2)

Organisms

Homo sapiens (13)
Schizophyllum commune H4-8 (2)
Mycobacterium tuberculosis SP7 (2)
Mycobacterium tuberculosis SP10 (2)
Mycobacterium tuberculosis SP13 (2)
Mycobacterium tuberculosis SP22 (2)
Chlamydomonas reinhardtii (2)
Enterococcus mundtii CRL35 (2)
Oncorhynchus tshawytscha (2)
Pseudomonas canadensis (2)
Influenza A virus (A/California/04/2009(H1N1)) (2)
Pseudomonas aeruginosa PAO1H2O (2)
Human alphaherpesvirus 1 strain 17 (2)
Mycobacterium tuberculosis SP1 (2)
Marchantia polymorpha subsp. ruderalis (2)
Methylocystis sp. (2)
Exiguobacterium sp. SH31 (2)
Palaemonetes sp. common grass shrimp associated circular virus (2)
Amaranthus tricolor (2)
Spirochaeta sp. ELBA (2)
Acipenser sturio (2)
Clavibacter nebraskensis NCPPB 2581 (2)
Porites pukoensis (2)
Porphyromonas gingivalis (2)
Leishmania tarentolae (2)
Porphyromonas gingivalis W83 (2)
Human betaherpesvirus 5 (2)
Bothrops insularis (2)
Bothrops jararaca (2)
Bothrops jararacussu (2)

Repository

EGA (13)
MetaboLights (3)
pride (2)

Tissue

Bark (1)
Adipose tissue (1)
Muscle (1)
Root (1)
Plant cell (1)

Technology Type

Illumina HiSeq 2000 (2)
Mass spectrometry (2)
Mass Spectrometry (2)
NMR spectroscopy (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Direct infusion MS - positive (2)
Direct infusion MS - (1)
Direct infusion MS - negative (1)
Bruker (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2022 (1)
2021 (1)
2017 (1)
2025 (1)
2018 (1)

CHEBI ID

CHEBI:85700 (2)
CHEBI:28315 (2)
CHEBI:16750 (2)
CHEBI:15760 (2)
CHEBI:28842 (2)
CHEBI:28044 (2)
CHEBI:25094 (2)
CHEBI:25017 (2)
CHEBI:28300 (2)
CHEBI:18237 (2)
CHEBI:22660 (2)
CHEBI:179064 (1)
CHEBI:167027 (1)
CHEBI:167026 (1)
CHEBI:84495 (1)
CHEBI:185608 (1)
CHEBI:169453 (1)
CHEBI:176217 (1)
CHEBI:187271 (1)
CHEBI:183008 (1)
CHEBI:88759 (1)
CHEBI:178972 (1)
CHEBI:176288 (1)
CHEBI:132489 (1)
CHEBI:142380 (1)
CHEBI:176132 (1)
CHEBI:169429 (1)
CHEBI:34706 (1)
CHEBI:169295 (1)
CHEBI:180069 (1)

Metabolite Name

Kyunurenine (1)
T-methylhisitidine (1)
Nicotinate (vit B3) (1)
T-methylhistidine (1)
Homovallinate (1)
Mannose? (1)
Sucrose? (1)
Riboflavin? (vit b2) (1)
Succinylacetone? (1)
N-acetylglucosamine (1)
Hydroxybutyrate (1)
Methylhistidine (1)
TG(53:0) (1)
TG(62:4) (1)
TG(57:6) (1)
TG(60:4) (1)
TG(O-58:6) (1)
TG(O-56:6) (1)
TG(57:5) (1)
TG(51:5) (1)
TG(44:3) (1)
DG(40:6) (1)
DG(35:3) (1)
DG(36:3) (1)
[2-(5,7-dihydroxy-4-oxo-2-phenyl-4H-chromen-8-yl)-4,5-dihydroxyoxan-3-yl]oxidanesulfonic acid (1)
6-[(3-carboxy-3-hydroxy-2-{[3-(4-hydroxy-3-methoxyphenyl)prop-2-enoyl]oxy}propanoyl)oxy]-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
Hydrojuglone glucoside (1)
DG(16:0) (1)
Ethyl 2-(methyldithio)propionate (1)
N,N'-Bis(g-glutamyl)-3,3'-(1,2-propylenedithio)dialanine (1)

Release Date

2021 (30)
2022 (27)
2023 (21)
2024 (19)
2025 (16)
2019 (12)
2018 (12)
2020 (10)
2015 (7)
2011 (7)
2016 (6)
2017 (4)
2010 (4)
2014 (3)
2026 (2)
2012 (2)
2009 (2)
2013 (1)
2008 (1)
2005 (1)

Lab affiliation

Section for Geobiology, Globe Institute, University of Copenhagen, Copenhagen, Denmark. McDonald Institute for Archaeological Research, University of Cambridge, UK. (1)
University of Bangor (1)

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Metabolomic and Metataxonomic Fingerprinting of Human Milk Suggests Compositional Stability over a Natural Term of Breastfeeding to 24 Months

Sparse data exist regarding the normal range of composition of maternal milk beyond the first postnatal weeks. This single timepoint, observational study in collaboration with the 'Parenting Science Gang' citizen science group evaluated the metabolite and bacterial composition of human milk from 62 ...

2022-02-11 | MTBLS1370 | MetaboLights

Analysis of oak stem lesions in Acute Oak Decline using shotgun proteomics

Acute Oak Decline (AOD) is a decline-disease currently spreading in Britain, threatening oak trees. Here, we analyze and compare the proteomes of inner bark tissue sampled from oak stems of trees symptomatic with AOD and non-symptomatic trees.

ORGANISM(S): Quercus petraea Quercus robur

2018-02-07 | PXD004991 | Pride

Not available

S-EPMC7237199 | biostudies-literature

Management of cardiac arrest following cardiac surgery.

Not available

S-EPMC7807979 | biostudies-literature

Testing a Model of Self-Management of Fluid Intake in Community-Residing Long-term Indwelling Urinary Catheter Users.

Not available

S-EPMC4780355 | biostudies-literature

Divergent relationships between faecal microbiota and metabolome following distinct antibiotic-induced disruptions

The intestinal microbiome plays an essential role in regulating many aspects of host physiology, and its disruption through antibiotic exposure has been implicated in the development of a range of serious pathologies. The complex metabolic relationships that exist between members of the intestinal m...

2017-03-03 | MTBLS422 | MetaboLights

Self-management intervention for long-term indwelling urinary catheter users: randomized clinical trial.

Not available

S-EPMC4268883 | biostudies-literature

Implementing the Baby One Program: a qualitative evaluation of family-centred child health promotion in remote Australian Aboriginal communities.

Not available

S-EPMC5866524 | biostudies-literature

Safety and tolerability of experimental hookworm infection in humans with metabolic disease: study protocol for a phase 1b randomised controlled clinical trial.

Not available

S-EPMC6907345 | biostudies-literature

Effect of experimental hookworm infection on insulin resistance in people at risk of type 2 diabetes.

Not available