McKay A A - OmicsDI

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Unknown (2464)
Genomics (53)
Transcriptomics (51)
Proteomics (21)
Metabolomics (4)
Genomic (2)

Organisms

Homo sapiens (45)
Caenorhabditis elegans (23)
Mus musculus (13)
Arabidopsis thaliana (6)
Rattus norvegicus (4)
Drosophila melanogaster (3)
Anopheles gambiae (2)
Bos taurus (2)
Bacillus cereus ATCC 14579 (1)
mixed sample (1)
Gossypium hirsutum (1)
Oryza sativa (1)
Ovis aries (1)
Sarcophilus harrisii (1)

Organisms

Drosophila melanogaster (12)
Homo sapiens (2)
Bos taurus (1)

Repository

biostudies-arrayexpress (78)
pride (16)
ENA (16)
EGA (8)
MetaboLights (4)
PAXDB (3)
dbGaP (2)
geo (2)
MassIVE (2)

Tissue

Cell culture (4)
Epithelial cell (3)
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Blood (2)
Leaf (2)
Liver (2)
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Cell suspension culture (1)
Intestine (1)
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Disease

Chronic kidney disease (2)
Acquired immunodeficiency syndrome (1)
Colon cancer (1)
Global developmental delay (1)
Neuronal ceroid lipofuscinosis 7 (1)
Rectum cancer (1)

Technology Type

Mass Spectrometry (16)
Shotgun proteomics (7)
Data-independent acquisition (5)
SWATH MS (3)
Mass spectrometry (2)
NMR spectroscopy (2)
Bottom-up proteomics (2)
Illumina OncoArray (1)
Data-dependent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Illumina HiSeq 2500 (2)
Microcentrifuge (1)
ScanArray scanning hardware (1)
NextSeq 550 (1)
Illumina NovaSeq 6000 (1)
Q Exactive (1)
TripleTOF 6600 (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Nuclear Magnetic Resonance (NMR) (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2011 (25)
2014 (16)
2012 (13)
2021 (6)
2013 (5)
2024 (5)
2010 (4)
2025 (3)
2016 (3)
2015 (3)
2022 (3)
2020 (3)
2023 (3)
2026 (3)
2017 (2)
2009 (2)
2008 (1)
2007 (1)
2006 (1)
2004 (1)
2019 (1)
2018 (1)

UNIPROT ID/AC

A0A075C4Z3_GOSHI (3)
A0A088B738_GOSHI (3)
A0A0A0QBB1_GOSHI (3)
A0A0A7R535_GOSHI (3)
A0A0A7R547_GOSHI (3)
A0A0C5LA06_GOSHI (3)
A0A0G2QMX4_GOSHI (3)
A0A0U1WT33_GOSHI (3)
A0A0U1WT38_GOSHI (3)
A0A0U2KVS8_GOSHI (3)
A0A0U2L631_GOSHI (3)
A0A1B1HY16_GOSHI (3)
A0A1U8HGG8_GOSHI (3)
A0A1U8HGL0_GOSHI (3)
A0A1U8HGM8_GOSHI (3)
A0A1U8HGN1_GOSHI (3)
A0A1U8HGQ8_GOSHI (3)
A0A1U8HGW8_GOSHI (3)
A0A1U8HGZ9_GOSHI (3)
A0A1U8HH74_GOSHI (3)
A0A1U8HHD8_GOSHI (3)
A0A1U8HHJ5_GOSHI (3)
A0A1U8HHK8_GOSHI (3)
A0A1U8HHN8_GOSHI (3)
A0A1U8HHP1_GOSHI (3)
A0A1U8HHQ1_GOSHI (3)
A0A1U8HHZ8_GOSHI (3)
A0A1U8HID4_GOSHI (3)
A0A1U8HIE0_GOSHI (3)
A0A1U8HIG6_GOSHI (3)

CHEBI ID

CHEBI:16737 (4)
CHEBI:15354 (3)
CHEBI:17368 (3)
CHEBI:17750 (3)
CHEBI:20067 (3)
CHEBI:30769 (3)
CHEBI:1148 (2)
CHEBI:15344 (2)
CHEBI:15347 (2)
CHEBI:15366 (2)
CHEBI:15428 (2)
CHEBI:15724 (2)
CHEBI:16828 (2)
CHEBI:16919 (2)
CHEBI:17154 (2)
CHEBI:17712 (2)
CHEBI:17790 (2)
CHEBI:18050 (2)
CHEBI:25094 (2)
CHEBI:28619 (2)
CHEBI:30751 (2)
CHEBI:32816 (2)
CHEBI:10070 (1)
CHEBI:10120 (1)
CHEBI:10136 (1)
CHEBI:10782 (1)
CHEBI:111517 (1)
CHEBI:1157 (1)
CHEBI:116314 (1)
CHEBI:11805 (1)

Metabolite Name

Creatinine (3)
3-Hydroxybutyric acid (2)
Citric acid (2)
(R)-3-Hydroxybutyric acid (1)
(ÃÂ±)-2-(1-Methylpropyl)-4,6-dinitrophenol (1)
1,3,5-Trihydroxybenzene (1)
10E,12Z-Octadecadienoic acid (1)
12-Hydroxydodecanoic acid (1)
12-Oxo-2,3-dinor-10,15-phytodienoic acid (1)
15-Keto-13,14-dihydroprostaglandin A2 (1)
15-Keto-prostaglandin E2 (1)
16-Hydroxy hexadecanoic acid (1)
16-Methylheptadecanoic acid (1)
1H-Indole-3-carboxaldehyde (1)
2,2-Dimethylsuccinic acid (1)
2,3-Dihydroxybutanedioic acid (1)
2-Hydroxybutyric acid (1)
2-Hydroxyethanesulfonate (1)
2-Hydroxyisovalerate (1)
2-Hydroxyvaleric acid (1)
2-Methylglutaric acid (1)
2-Oxovaleric acid (1)
2-hydroxybutyric acid (1)
3,3-Dimethylglutaric acid (1)
3-(3,4-Dihydroxy-5-methoxy)-2-propenoic acid (1)
3-Hydroxyanthranilic acid (1)
3-Hydroxycapric acid (1)
3-Hydroxyisobutyrate (1)
3-Hydroxymethylglutaric acid (1)
3-hydroxybutyric acid (1)

First Public Date

2022 (3)
2021 (3)
2019 (2)
2017 (2)
2024 (1)
2023 (1)
2020 (1)
2016 (1)
2014 (1)
2013 (1)

Study type

Transcription profiling by array (28)
ChIP-seq (26)
RNA-seq of coding RNA (9)
Comparative genomic hybridization by array (3)
Other (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Genotyping by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (286)
2021 (273)
2025 (253)
2023 (236)
2024 (218)
2020 (188)
2019 (147)
2018 (145)
2016 (120)
2017 (119)
2015 (112)
2014 (85)
2011 (70)
2012 (63)
2013 (55)
2010 (39)
2026 (38)
2009 (25)
2008 (13)
2007 (11)
2006 (10)
2004 (9)
2001 (7)
2005 (5)
2002 (4)
2000 (3)
1998 (3)
2003 (2)
1999 (1)
1996 (1)

Lab affiliation

1Centre for Bioscience, Manchester Metropolitan University, Manchester, UK (1)
Assistant Professor of Medicine (Hematology) Senior Fellow, Duke Aging Center Duke Molecular Physiology Institute Duke University School of Medicine (1)
Bowel Cancer and Biomarker Lab Kolling Institute The University of Sydney (1)
Bowel Cancer and Biomarker Laboratory School of Medical Sciences The University of Sydney (1)
Conway Institute Research Fellow Special Lecturer in Clinical Pharmacology School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland. (1)
Department of Biological Sciences at Macquarie University (1)
Department of Molecular Sciences, Macquarie University, North Ryde, NSW 2109, Australia (1)
Laboratory of Ageing and Pharmacology, Kolling Institute, The University of Sydney (1)
Max Planck Institute of Immunobiology and Epigenetics Freiburg, Germany (1)
Meharry Medical College (1)
Menzies Institute for Medical Research, University of Tasmania, Hobart, Tasmania 7000, Australia. (1)
NSW Department of Primary Industries, Extensive Livestock Industry Centre, Trevenna Rd, University of New England, Armidale, NSW, 2351, Australia. (1)
Peter MacCallum Cancer Centre and The Sir Peter MacCallum Department of Oncology, The University of Melbourne (1)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (1)
School of Biological Sciences, Queen’s University of Belfast, Belfast, UK (1)
Universidad de Zaragoza-IIS Aragon, 50009 Zaragoza, Spain. (1)

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A common set of DNA regulatory elements shapes Drosophila appendages

We mapped open chromatin by FAIRE-seq and measured gene expression by RNA-seq in 3 types of Drosophila samples: staged whole embryos, imaginal discs, pharate appendages. We first demonstrate that regions of open chromatin precisely define regions of enhancer activity in developing embryos. In contra...

ORGANISM(S): Drosophila melanogaster

2013-11-07 | E-GEOD-38727 | biostudies-arrayexpress

McKay reversible p53 response

Reversible p53 activation using a temperature variant of p53

ORGANISM(S): Homo sapiens

2012-04-30 | E-MEXP-3224 | biostudies-arrayexpress

Notch/HES1-mediated PARP1 activation: A cell-type specific mechanism for tumor suppression

Notch signaling plays both oncogenic and tumor suppressor roles, depending on cell type. In contrast to T cell acute lymphoblastic leukemia (T-ALL), where Notch activation promotes leukemogenesis, induction of Notch signaling in B-ALL leads to growth arrest and apoptosis. The Notch target Hairy/Enha...

ORGANISM(S): Homo sapiens

2011-12-12 | E-GEOD-26366 | biostudies-arrayexpress

Evaluation of the complex transcriptional topography of mesenchymal stem cell chondrogenesis for cartilage tissue engineering.

Not available

S-EPMC2928043 | biostudies-literature

An Evaluation of Cognitive Behavioral Therapy for Insomnia: A Systematic Review and Application of Tolin's Criteria for Empirically Supported Treatments.

Not available

S-EPMC7939024 | biostudies-literature

Validity and reliability evidence of a point of care assessment of salivary cortisol and α-amylase: a pre-registered study.

Not available

S-EPMC6954686 | biostudies-literature

Central nervous system immune interactome is a function of cancer lineage, tumor microenvironment, and STAT3 expression.

Not available

S-EPMC9090258 | biostudies-literature

SMN deficiency perturbs monoamine neurotransmitter metabolism in spinal muscular atrophy

Beyond motor neuron degeneration, homozygous mutations in the survival motor neuron 1 (SMN1) gene cause multiorgan and metabolic defects in patients with spinal muscular atrophy (SMA). However, the precise biochemical features of these alterations and the age of onset in the brain and peripheral ...

2023-11-27 | MTBLS8784 | MetaboLights

Use of Patient-Reported Symptom Data in Clinical Decision Rules for Predicting Influenza in a Telemedicine Setting.

Not available

S-EPMC10688580 | biostudies-literature

Pegylated insulin-like growth factor-1 biotherapeutic delivery promotes rotator cuff regeneration in a rat model.

Not available

S-EPMC10324960 | biostudies-literature