McKay S S - OmicsDI

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Unknown (1307)
Transcriptomics (37)
Genomics (33)
Proteomics (13)
Metabolomics (4)

Organisms

Homo sapiens (32)
Caenorhabditis elegans (23)
Mus musculus (8)
Arabidopsis thaliana (6)
Rattus norvegicus (4)
Anopheles gambiae (2)
mixed sample (1)
Drosophila melanogaster (1)
Oryza sativa (1)
Ovis aries (1)
Sarcophilus harrisii (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (61)
pride (11)
EGA (8)
MetaboLights (4)
MassIVE (2)
ENA (1)

Tissue

Fibroblast (3)
Cell culture (2)
Epithelial cell (2)
Liver (2)
Blood (1)
Blood plasma (1)
Blood serum (1)
Cell suspension culture (1)
Intestine (1)
Leaf (1)
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Skin (1)

Disease

Chronic kidney disease (2)
Acquired immunodeficiency syndrome (1)
Colon cancer (1)
Global developmental delay (1)

Technology Type

Mass Spectrometry (11)
Shotgun proteomics (5)
Data-independent acquisition (3)
Mass spectrometry (2)
NMR spectroscopy (2)
SWATH MS (2)
Illumina OncoArray (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Illumina HiSeq 2500 (2)
Microcentrifuge (1)
ScanArray scanning hardware (1)
NextSeq 550 (1)
Illumina NovaSeq 6000 (1)
Q Exactive (1)
TripleTOF 6600 (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Nuclear Magnetic Resonance (NMR) (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2011 (24)
2012 (12)
2014 (6)
2013 (5)
2024 (5)
2020 (3)
2023 (3)
2025 (2)
2021 (2)
2017 (2)
2010 (2)
2009 (2)
2016 (1)
2015 (1)
2008 (1)
2007 (1)
2006 (1)
2004 (1)
2026 (1)
2022 (1)
2019 (1)
2018 (1)

CHEBI ID

CHEBI:16737 (4)
CHEBI:15354 (3)
CHEBI:17368 (3)
CHEBI:17750 (3)
CHEBI:20067 (3)
CHEBI:30769 (3)
CHEBI:1148 (2)
CHEBI:15344 (2)
CHEBI:15347 (2)
CHEBI:15366 (2)
CHEBI:15428 (2)
CHEBI:15724 (2)
CHEBI:16828 (2)
CHEBI:16919 (2)
CHEBI:17154 (2)
CHEBI:17712 (2)
CHEBI:17790 (2)
CHEBI:18050 (2)
CHEBI:25094 (2)
CHEBI:28619 (2)
CHEBI:30751 (2)
CHEBI:32816 (2)
CHEBI:10070 (1)
CHEBI:10120 (1)
CHEBI:10136 (1)
CHEBI:10782 (1)
CHEBI:111517 (1)
CHEBI:1157 (1)
CHEBI:116314 (1)
CHEBI:11805 (1)

Metabolite Name

Creatinine (3)
3-Hydroxybutyric acid (2)
Citric acid (2)
(R)-3-Hydroxybutyric acid (1)
(ÃÂ±)-2-(1-Methylpropyl)-4,6-dinitrophenol (1)
1,3,5-Trihydroxybenzene (1)
10E,12Z-Octadecadienoic acid (1)
12-Hydroxydodecanoic acid (1)
12-Oxo-2,3-dinor-10,15-phytodienoic acid (1)
15-Keto-13,14-dihydroprostaglandin A2 (1)
15-Keto-prostaglandin E2 (1)
16-Hydroxy hexadecanoic acid (1)
16-Methylheptadecanoic acid (1)
1H-Indole-3-carboxaldehyde (1)
2,2-Dimethylsuccinic acid (1)
2,3-Dihydroxybutanedioic acid (1)
2-Hydroxybutyric acid (1)
2-Hydroxyethanesulfonate (1)
2-Hydroxyisovalerate (1)
2-Hydroxyvaleric acid (1)
2-Methylglutaric acid (1)
2-Oxovaleric acid (1)
2-hydroxybutyric acid (1)
3,3-Dimethylglutaric acid (1)
3-(3,4-Dihydroxy-5-methoxy)-2-propenoic acid (1)
3-Hydroxyanthranilic acid (1)
3-Hydroxycapric acid (1)
3-Hydroxyisobutyrate (1)
3-Hydroxymethylglutaric acid (1)
3-hydroxybutyric acid (1)

First Public Date

2023 (1)

Study type

ChIP-seq (23)
Transcription profiling by array (21)
RNA-seq of coding RNA (5)
Comparative genomic hybridization by array (2)
Other (2)
Methylation profiling by array (2)
Transcription profiling by SAGE (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Genotyping by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (148)
2022 (148)
2023 (142)
2025 (137)
2024 (135)
2020 (86)
2019 (84)
2018 (74)
2017 (65)
2016 (62)
2015 (57)
2011 (49)
2014 (37)
2012 (35)
2013 (28)
2010 (20)
2026 (17)
2009 (16)
2008 (6)
2007 (6)
2004 (5)
2006 (4)
2003 (3)
2001 (2)
2005 (1)
1999 (1)

Lab affiliation

Assistant Professor of Medicine (Hematology) Senior Fellow, Duke Aging Center Duke Molecular Physiology Institute Duke University School of Medicine (1)
Conway Institute Research Fellow Special Lecturer in Clinical Pharmacology School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland. (1)
Department of Molecular Sciences, Macquarie University, North Ryde, NSW 2109, Australia (1)
Laboratory of Ageing and Pharmacology, Kolling Institute, The University of Sydney (1)
Max Planck Institute of Immunobiology and Epigenetics Freiburg, Germany (1)
Meharry Medical College (1)
Menzies Institute for Medical Research, University of Tasmania, Hobart, Tasmania 7000, Australia. (1)
NSW Department of Primary Industries, Extensive Livestock Industry Centre, Trevenna Rd, University of New England, Armidale, NSW, 2351, Australia. (1)
Peter MacCallum Cancer Centre and The Sir Peter MacCallum Department of Oncology, The University of Melbourne (1)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (1)
Universidad de Zaragoza-IIS Aragon, 50009 Zaragoza, Spain. (1)

Tags

xref:PubMed:37018654 (1)

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Comparative metabolomic analysis of exudates of microcystin-producing and microcystin-free Microcystis aeruginosa strains

Cyanobacterial harmful algal blooms (cHABs) dominated by Microcystis aeruginosa threaten the ecological integrity and beneficial uses of lakes globally. In addition to producing hepatotoxic microcystins (MC), M. aeruginosa exudates (MaE) contain various compounds with demonstrat...

2023-01-16 | MTBLS6603 | MetaboLights

Dataset of urinary metabolites measured by ¹H NMR analysis of normal human urine.

Not available

S-EPMC5155042 | biostudies-literature

Data on serologic inflammatory biomarkers assessed using multiplex assays and host characteristics in the Multicenter AIDS Cohort Study (MACS).

Not available

S-EPMC5024314 | biostudies-literature

SMN deficiency perturbs monoamine neurotransmitter metabolism in spinal muscular atrophy

Beyond motor neuron degeneration, homozygous mutations in the survival motor neuron 1 (SMN1) gene cause multiorgan and metabolic defects in patients with spinal muscular atrophy (SMA). However, the precise biochemical features of these alterations and the age of onset in the brain and peripheral ...

2023-11-27 | MTBLS8784 | MetaboLights

Development of real-time PCR assays for detection of the Streptococcus milleri group from cystic fibrosis clinical specimens by targeting the cpn60 and 16S rRNA genes.

Not available

S-EPMC2849594 | biostudies-literature

Effect of acetabular morphological parameters applied in proximal femoral varus osteotomy on the treatment of developmental dysplasia of the hip in children.

Not available

S-EPMC8193007 | biostudies-literature

Quorum-sensing inhibition abrogates the deleterious impact of Pseudomonas aeruginosa on airway epithelial repair.

Not available

S-EPMC6191002 | biostudies-literature

TLR9 re-expression in cancer cells extends the S-phase and stabilizes p16(INK4a) protein expression.

Not available