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Genomicsena-DATASET-CRUK-CI-22-07-2020-08:24:26:904-1617 - samples
RNA-SEQ for the Caldas Lab breast cancer PDTX collection. This includes both single and paired end runs
EGAD00001006307 | EGA
Genomicsena-DATASET-CRUK-CI-15-09-2016-11:30:35:546-51 - samples
Breast cancer PDTX sequencing data from Bruna et al, Cell 2016 - Exome Sequencing - Shallow Whole Genome Sequencing - RRBS Methylation Sequencing
EGAD00001002685 | EGA
GenomicsExpressionPDTX
RNA Expression using Illumina HT12 v3
EGAD00010001032 | EGA
GenomicsBreast Cancer PDTX Encyclopaedia
Molecular data from the collection of PDTX breast cancer models described in Bruna et al, 2016. Cell. It includes whole exome sequencing, shallow whole genome sequencing, expression arrays and reduced bisulfite representation sequencing (RRBS).
EGAS00001001913 | EGA
GenomicsData access policy for PDTX Breast Cancer data from Bruna et al (2016), Cell.
Data Access Committee EGAC00001000540
EGAC00001000540 | EGA
GenomicsEGAS00001000262-sc-20121031 - samples
A small subsample of EGAD00001000689. Please do not use.
EGAD00001000263 | EGA
GenomicsEGAS00001000262-sc-20131030 - samples
Whole genome DNA sequencing was used to decrypt the phylogeny of multiple samples from distinct areas of cancer and morphologically normal tissue taken from the prostates of 3 men. For each of three different prostates, multiple tumour samples (4, 5, and 3 depending on the case) and one normal tissu...
EGAD00001000689 | EGA
GenomicsEGAS00001000262-sc-20180521 - samples
Data collected as part of the Normal prostatectomy project analysis. Whole genome sequencing (WGS, targeted at 30X for normal tissue and 50X for tumour tissue) was performed on morphologically normal tissue samples from 30 patients with prostate cancer. In addition, seven prostate tissue samples wer...
EGAD00001004125 | EGA
GenomicsEGAS00001000262-sc-2023-03-27T08:52:54Z - samples
This dataset includes Illumina EPIC Capture Sequencing Data of 376 samples from 188 men with prostate cancer. Samples were taken from primary tissue obtained at prostatectomy, with matched pathologically assessed non-cancer control material. This DNA methylation data includes donors and samples incl...
EGAD00001010184 | EGA
GenomicsEGAS00001000262-sc-20170314 - samples
Whole Genome Sequencing Illumina HiSeq data from 111 men with prostate cancer. Samples were taken from primary tissue obtained at prostatectomy (target sequencing depth 50X) with matched blood control (target sequencing depth 30X). This data is from batches 4 to 6.
EGAD00001003225 | EGA
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